pyproject.toml

[project]
name = "lipidlibrarian"
version = "0.2.1"
description = "A Lipidomics Database Explorer Package"
readme = "README.md"
authors = [
    {name = "Felix Niedermaier", email = "felix.niedermaier@tum.de"},
    {name = "Konstantinos Mechteridis"},
    {name = "Konstantin Pelz"}
]
requires-python = ">=3.10"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
    "Intended Audience :: Science/Research",
    "Natural Language :: English",
    "Operating System :: OS Independent",
    "Operating System :: POSIX :: Linux",
    "Topic :: Database :: Front-Ends",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Programming Language :: Python :: 3",
]
keywords = ["lipids", "bioinformatics", "development"]
dependencies = [
    "requests",
    "importlib-metadata",
    "numpy",
    "pandas",
    "tables",
    "jsons",
    "json2html",
    "SQLAlchemy",
    "PyMySQL",
    "networkx",
    "obonet",
    "ratelimit",
    "rdkit",
    "func-timeout",
    "liputils",
    "sparql-dataframe", # returns SPARQL queries as pandas dataframes
    "pygoslin",
    "linex2",
]

[project.urls]
"Bug Reports" = "https://github.com/lipitum/lipidlibrarian/issues"
"Source" = "https://github.com/lipitum/lipidlibrarian/"

[project.optional-dependencies]
dev = ["pytest", "flake8", "rpy2"]
test = [
    "pytest"
]
lint = [
    "flake8"
]

[tool.flake8]
max-line-length = 80

[tool.pytest.ini_options]
testpaths = [
    "test"
]
addopts = [
    "--import-mode=importlib",
]

[build-system]
requires = [
    "setuptools"
]
build-backend = "setuptools.build_meta"

[project.scripts]
lipidlibrarian = "lipidlibrarian.cli:main"