From 97900ced4430bffb9c90071be3913c4ade710098 Mon Sep 17 00:00:00 2001
From: Patrick Li <pli@pascal.cl.emory.edu>
Date: Wed, 19 Jun 2024 14:24:32 -0400
Subject: [PATCH] debug

---
 .github/workflows/continous-integration.yml | 66 +++++++++++----------
 .github/workflows/download-artifact.yml     | 48 +++++++++++----
 2 files changed, 69 insertions(+), 45 deletions(-)

diff --git a/.github/workflows/continous-integration.yml b/.github/workflows/continous-integration.yml
index f57ca91..9fe43cc 100644
--- a/.github/workflows/continous-integration.yml
+++ b/.github/workflows/continous-integration.yml
@@ -17,37 +17,39 @@ permissions:
 
 jobs:
   build:
-
     runs-on: macos-latest
-
     steps:
-    - uses: actions/checkout@v3
-
-    - name: Set up Miniconda
-      uses: conda-incubator/setup-miniconda@v2
-      with:
-        auto-update-conda: true
-        miniconda-version: "latest"
-        channels: anaconda
-        channel-priority: true
-
-    - name: Create conda environment
-      run: conda env create -f devtools/conda-envs/environment.yml
-
-    - name: Activate conda environment
-      shell: bash -l {0}
-      run: conda activate autosolvate
-
-    - name: Install additional dependencies if needed
-      run: conda install --yes flake8 pytest
-
-    - name: Test with pytest
-      run: 
-        mkdir -p test-reports     
-        conda run -n autosolvate pytest --junitxml=test-reports/results.xml
-
-    - name: Upload Test Reports
-      uses: actions/upload-artifact@v3
-      with:
-        name: test-reports
-        path: test-reports/results.xml
+      - uses: actions/checkout@v3
+
+      - name: Set up Miniconda
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          miniconda-version: "latest"
+          channels: anaconda
+          channel-priority: true
+
+      - name: Create conda environment
+        run: conda env create -f devtools/conda-envs/environment.yml
+
+      - name: Activate conda environment
+        shell: bash -l {0}
+        run: conda activate autosolvate
+
+      - name: Install additional dependencies if needed
+        run: conda install --yes flake8 pytest
+
+      - name: Create test reports directory
+        run: mkdir -p test-reports
+
+      - name: Test with pytest
+        run: conda run -n autosolvate pytest --junitxml=test-reports/results.xml
+
+      - name: Check if pytest results file exists
+        run: ls -la test-reports/
+
+      - name: Upload Test Reports
+        uses: actions/upload-artifact@v3
+        with:
+          name: test-reports
+          path: test-reports/results.xml
\ No newline at end of file
diff --git a/.github/workflows/download-artifact.yml b/.github/workflows/download-artifact.yml
index 46c25cc..d6558e6 100644
--- a/.github/workflows/download-artifact.yml
+++ b/.github/workflows/download-artifact.yml
@@ -1,21 +1,43 @@
-name: Download Artifacts
+name: Download Test Reports
 
-on: workflow_dispatch
+on: [push, pull_request]
+
+permissions:
+  contents: read
 
 jobs:
-  fetch-reports:
-    runs-on: ubuntu-latest
+  build:
+
+    runs-on: macos-latest
 
     steps:
-    - name: Checkout code
-      uses: actions/checkout@v2
+    - uses: actions/checkout@v3
 
-    - name: Download Test Reports
-      uses: actions/download-artifact@v3
+    - name: Set up Miniconda
+      uses: conda-incubator/setup-miniconda@v2
       with:
-        name: test-reports
-        path: downloaded-reports
+        auto-update-conda: true
+        miniconda-version: "latest"
+        channels: anaconda
+        channel-priority: true
+
+    - name: Create conda environment
+      run: conda env create -f devtools/conda-envs/environment.yml
+
+    - name: Activate conda environment
+      shell: bash -l {0}
+      run: conda activate autosolvate
 
-    - name: Display Report
-      run: |
-        cat downloaded-reports/results.xml
\ No newline at end of file
+    - name: Install additional dependencies if needed
+      run: conda install --yes flake8 pytest
+
+    - name: Test with pytest
+      run: 
+        mkdir -p test-reports     
+        conda run -n autosolvate pytest --junitxml=test-reports/results.xml
+
+    - name: Upload Test Reports
+      uses: actions/upload-artifact@v3
+      with:
+        name: test-reports
+        path: test-reports/results.xml
\ No newline at end of file