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--score 'all' leads to improper bedgraph generation with --bgscore 'True' #65

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EvanTarbell opened this issue Jul 2, 2020 · 1 comment
Open

--score 'all' leads to improper bedgraph generation with --bgscore 'True' #65

EvanTarbell opened this issue Jul 2, 2020 · 1 comment

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@EvanTarbell
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Just commenting to report a possible bug. As you mentioned the peak file is not generated properly when the --score parameter is set to 'all' but the bedgraph should work fine. I ran the command with --score set to 'all' and the bedgraphs generated for all samples had less than 10 lines so this option probably also interferes with the bedgraph generation. Setting the --score parameter to zscore solved the issue and produced complete bedgraphs.

Originally posted by @nyuhic in #64 (comment)
@EvanTarbell
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Related issue to #52

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@EvanTarbell