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pyproject.toml
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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
name = "robin"
dynamic = ["version"]
description = ''
readme = "README.md"
requires-python = ">=3.8"
license = "MIT"
keywords = []
authors = [
{ name = "Matt Loose", email = "[email protected]" },
]
classifiers = [
"Development Status :: 4 - Beta",
"Programming Language :: Python",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Programming Language :: Python :: Implementation :: CPython",
"Programming Language :: Python :: Implementation :: PyPy",
]
dependencies = [
"niceGUI<=2.0.0",
"click",
"flet",
"cnv_from_bam",
"watchdog",
"pysam",
"pandas",
"readfish",
"sturgeon@git+https://github.com/looselab/sturgeon",
"methylartist@git+https://github.com/mattloose/methylartist",
"tqdm",
"gff3_parser",
"dna_features_viewer",
"natsort",
"reportlab",
"icecream",
"psutil",
"ruptures",
"pywebview",
"torch==1.12.1",
"scikit-learn",
"yappi",
"tabulate",
"networkx",
"docker",
"opencv-python",
"zxing-cpp"
]
[project.scripts]
robin = "robin.main:package_run"
[project.urls]
Documentation = "https://github.com/unknown/robin#readme"
Issues = "https://github.com/unknown/robin/issues"
Source = "https://github.com/unknown/robin"
[tool.hatch.version]
path = "src/robin/__about__.py"
[tool.hatch.metadata]
allow-direct-references=true
[tool.hatch.envs.default]
dependencies = [
"coverage[toml]>=6.5",
"pytest",
"pytest-asyncio",
"pytest-selenium",
"selenium",
"icecream",
]
[tool.hatch.envs.default.scripts]
test = "pytest {args:tests}"
test-cov = "coverage run -m pytest {args:tests}"
cov-report = [
"-coverage combine",
"coverage report",
]
cov = [
"test-cov",
"cov-report",
]
[[tool.hatch.envs.all.matrix]]
python = ["3.9", "3.10", "3.11", "3.12"]
[tool.hatch.envs.types]
dependencies = [
"mypy>=1.0.0",
]
[tool.hatch.envs.types.scripts]
check = "mypy --install-types --non-interactive {args:src/robin tests}"
[tool.coverage.run]
source_pkgs = ["robin", "tests"]
branch = true
parallel = true
omit = [
"src/robin/__about__.py",
]
[tool.coverage.paths]
robin = ["src/robin", "*/robin/src/robin"]
tests = ["tests", "*/robin/tests"]
[tool.coverage.report]
exclude_lines = [
"no cov",
"if __name__ == .__main__.:",
"if TYPE_CHECKING:",
]