-
Notifications
You must be signed in to change notification settings - Fork 1
/
Copy pathcradAscii2netCDF_v22.m
1212 lines (1063 loc) · 61.5 KB
/
cradAscii2netCDF_v22.m
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
%% cradAscii2netCDF_v22.m
% This function converts hourly radial files from native WERA ASCII format
% .crad_ascii in netCDF-4 format according to the European common data and metadata
% model integrating CMEMS-INSTAC and SDC CF extension requirements.
% v2.2 complies with Copernicus-InSituTAC-FormatManual-1.4,
% Copernicus-InSituTAC-SRD-1.41 and Copernicus-InSituTAC-ParametersList-3.2.0
% INPUT:
% radFilename: filename of the radial file to be converted (including full path)
% networkData: cell array containing information about the network
% (metadata)
% networkFields: field names of the cell array containing
% information about the network.
% stationData: cell array containing information about the station
% (metadata)
% stationFields: field names of the cell array containing
% information about the station.
% timestamp: timestamp of the radial file to be converted
% OUTPUT:
% cA2C_err: error flag (0 = correct, 1 = error)
% networkData: cell array containing information about the network.
% It is returned in case an update of the database is
% needed.
% ncFileNoPath: filename of the converted nc file, without the full path
% ncFilesize: size of the converted nc file.
% Author: Lorenzo Corgnati
% Date: September 28, 2020
% E-mail: [email protected]
%%
function [cA2C_err,networkData,ncFileNoPath,ncFilesize] = cradAscii2netCDF_v22(radFilename,networkData,networkFields,stationData,stationFields,timestamp)
disp(['[' datestr(now) '] - - ' 'cradAscii2netCDF_v22.m started.']);
cA2C_err = 0;
warning('off', 'all');
%% Set scale_factor and add_offset values
scaleFactor = 0.001;
addOffset = 0;
%%
%% Retrieve the file header, the data table and the column names of the data table
try
% Retrieve top-left point of the first gridcell, cell size and number of lon and lat gridcells
[grb,grb,grb,topLeftLat,grb,topLeftLon,grb,cellSize]=textread(radFilename,'%s %f %s %f %s %f %s %f',1,'headerlines', 7);
assert(topLeftLat>=-90.0 & topLeftLat<=90.0,'Grid top-left latitude out of range');
assert(topLeftLon>=-180.0 & topLeftLon<=180.0,'Grid top-left latitude out of range');
[grb,grb,grb,lonCells,latCells]=textread(radFilename,'%f %f %f %u %u',1,'headerlines', 8);
% Read the data table
[latC,lonC,kur,snV,snV2,sn,pwr] = textread(radFilename,'%f %f %u %f %f %f %f','headerlines', 9);
ascTable=[lonC,latC,kur,snV,snV2,sn,pwr];
tableFields={'LonC' 'LatC' 'KUR' 'SNV' 'SNS' 'SNR' 'PWR'}; % TO BE CANCELLED AFTER JAN'S CONFIRMATION
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Retrieve site code and coordinates
try
station_idIndex = find(not(cellfun('isempty', strfind(stationFields, 'station_id'))));
siteCode = stationData{station_idIndex};
site_lonIndex = find(not(cellfun('isempty', strfind(stationFields, 'site_lon'))));
siteLon = stationData{site_lonIndex};
site_latIndex = find(not(cellfun('isempty', strfind(stationFields, 'site_lat'))));
siteLat = stationData{site_latIndex};
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Create the regular grid
try
% Retrieve lat lon points present in the file
unqLon = (sort(unique(lonC(lonC~=-999)))).*(180/pi);
unqLat = (sort(unique(latC(latC~=-999)))).*(180/pi);
unqLat = flipud(unqLat);
% Retrieve the steps in longitude and latitude
stepLon = mean(diff(unqLon));
stepLat = mean(diff(unqLat));
% Extend the sequence to create the grid
% Start of the sequence
seqLon = topLeftLon:stepLon:unqLon(1);
if(~isempty(seqLon))
if((abs(seqLon(end)-unqLon(1)))<(abs(stepLon)/2))
seqLon = seqLon(1:end-1);
end
end
seqLon = [seqLon unqLon'];
seqLat = topLeftLat:stepLat:unqLat(1);
if(~isempty(seqLat))
if((abs(seqLat(end)-unqLat(1)))<(abs(stepLat)/2))
seqLat = seqLat(1:end-1);
end
end
seqLat = [seqLat unqLat'];
% End of the sequence
for lon_idx=length(seqLon)+1:lonCells
seqLon = [seqLon seqLon(end)+stepLon];
end
for lat_idx=length(seqLat)+1:latCells
seqLat = [seqLat seqLat(end)+stepLat];
end
% % Shift coordinates from top-left corner to center of the grid cells
% for lat_idx=1:latCells
% for lon_idx=1:lonCells
% [gridLon(lon_idx) gridLat(lat_idx)] = km2lonlat(seqLon(lon_idx),seqLat(lat_idx),cellSize/2,-(cellSize/2));
% end
% end
% Change seqLon and seqLat variable names to gridLon and gridLat
% because they are the center of the grid cells and not the corners
gridLon = seqLon;
gridLat = seqLat;
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Create the TUV structure and fill it with the total data
try
% Fill the TUV structure with the total data
[cA2C_err,mat_rad] = cradAsciiTable2RAD(ascTable,tableFields,timestamp,gridLon,gridLat,siteLon,siteLat);
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Retrieve DoA, calibration types, calibration links and calibrations dates
try
% Find the last_calibration_date field from station data
ST_last_calibration_dateIndex = find(not(cellfun('isempty', strfind(stationFields, 'last_calibration_date'))));
ST_last_calibration_date = datenum(stationData(ST_last_calibration_dateIndex));
ST_last_calibration_date = ST_last_calibration_date(ST_last_calibration_date~=0);
lastPatternStr = [datestr(ST_last_calibration_date, 'yyyy-mm-dd') 'T' datestr(ST_last_calibration_date, 'HH:MM:SS') 'Z'];
% Find the DoA from station data
ST_DoAIndex = find(not(cellfun('isempty', strfind(stationFields, 'DoA_estimation_method'))));
DoAStr = stationData{ST_DoAIndex};
% Find the calibration_type from station data
ST_calibration_typeIndex = find(not(cellfun('isempty', strfind(stationFields, 'calibration_type'))));
calibration_typeStr = stationData{ST_calibration_typeIndex};
% Find the calibration_link from station data
ST_calibration_linkIndex = find(not(cellfun('isempty', strfind(stationFields, 'calibration_link'))));
calibration_linkStr = stationData{ST_calibration_linkIndex};
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Evaluate measurement vertical max and resolution
try
transmit_central_frequencyIndex = find(not(cellfun('isempty', strfind(stationFields, 'transmit_central_frequency'))));
txFreq = stationData{transmit_central_frequencyIndex}*1e6; % transmit frequency in Hertz
vertMax = (3e8)/(8*pi*txFreq);
catch err
display(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
R2C_err = 1;
end
%%
%% Prepare data
% Set netcdf format
ncfmt = 'netcdf4_classic';
try
timeref = datenum(1950,1,1);
time_units = ['days since ' datestr(timeref, 'yyyy-mm-dd') 'T' datestr(timeref, 'HH:MM:SS') 'Z'];
% [year,mon,day,hr,minutes,sec] = datevec(timeref);
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Set data creation time and date and start and stop time and date of the
% data time window.
try
creation = datestr(mat_rad.TimeStamp);
creationTime = [creation(length(creation)-7:length(creation)) ' UTC'];
stopTime = creationTime;
creation = datevec(mat_rad.TimeStamp);
creationDate = [num2str(creation(1)) '-' num2str(creation(2)) '-' num2str(creation(3))];
stopDate = creationDate;
creation = datestr(mat_rad.TimeStamp-1/24);
if (length(creation) == 11)
startTime = '00:00:00 UTC';
else
startTime = [creation(length(creation)-7:length(creation)) ' UTC'];
end
creation = datevec(mat_rad.TimeStamp-1/24);
startDate = [num2str(creation(1)) '-' num2str(creation(2)) '-' num2str(creation(3))];
catch err
display(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Set ADCC compliant data creation, coverage times and spatial resolution.
try
% File creation datetime
dateCreated = [datestr(now, 'yyyy-mm-dd') 'T' datestr(now, 'HH:MM:SS') 'Z'];
% Data coverage period
temporal_resolutionIndex = find(not(cellfun('isempty', strfind(stationFields, 'temporal_resolution'))));
temporal_resolution = stationData{temporal_resolutionIndex};
coverageStart = addtodate(mat_rad.TimeStamp, -temporal_resolution/2, 'minute');
timeCoverageStart = [datestr(coverageStart, 'yyyy-mm-dd') 'T' datestr(coverageStart, 'HH:MM:SS') 'Z'];
coverageEnd = addtodate(mat_rad.TimeStamp, temporal_resolution/2, 'minute');
timeCoverageEnd = [datestr(coverageEnd, 'yyyy-mm-dd') 'T' datestr(coverageEnd, 'HH:MM:SS') 'Z'];
% Temporal resolution and duration
resolutionMinutes = minutes(temporal_resolution);
[resH,resM,resS] = hms(resolutionMinutes);
timeCoverageResolution = 'PT';
if(resH~=0)
timeCoverageResolution = [timeCoverageResolution num2str(resH) 'H'];
end
if(resM~=0)
timeCoverageResolution = [timeCoverageResolution num2str(resM) 'M'];
end
if(resS~=0)
timeCoverageResolution = [timeCoverageResolution num2str(resS) 'S'];
end
timeCoverageDuration = timeCoverageResolution;
% Geospatial resolution
latRes = abs(stepLat);
lonRes = abs(stepLon);
catch err
display(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Set nc output file name
try
ts = datevec(mat_rad.TimeStamp);
fileTime = sprintf('%.4d_%.2d_%.2d_%.2d%.2d',ts(1,1),ts(1,2),ts(1,3),ts(1,4),ts(1,5));
outputPathIndex = find(not(cellfun('isempty', strfind(stationFields, 'radial_HFRnetCDF_folder_path'))));
network_idIndex = find(not(cellfun('isempty', strfind(networkFields, 'network_id'))));
stationData{outputPathIndex} = strtrim(stationData{outputPathIndex});
%v2.2
[rFB_err, ncFilePath] = radialFolderBuilder_v22(stationData{outputPathIndex},siteCode,timestamp);
if(rFB_err == 0)
ncfile = [ncFilePath filesep networkData{network_idIndex} '-' siteCode '_' fileTime '.nc'];
ncFileNoPath = [networkData{network_idIndex} '-' siteCode '_' fileTime '.nc'];
else
disp(['[' datestr(now) '] - - ERROR in building the folder structure.']);
return
end
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Set citation string and distribution string
try
citation_statementIndex = find(not(cellfun('isempty', strfind(networkFields, 'citation_statement'))));
citation_str = ['These data were collected and made freely available by the Copernicus project and the programs that contribute to it. ' networkData{citation_statementIndex}];
distribution_str = 'These data follow Copernicus standards; they are public and free of charge. User assumes all risk for use of data. User must display citation in any publication or product using data. User must contact PI prior to any commercial use of data.';
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Set naming authority
try
institution_websiteIndex = find(not(cellfun('isempty', strfind(stationFields, 'institution_website'))));
institution_websiteStr = stationData{institution_websiteIndex};
% if(~isempty(strfind(institution_websiteStr,'http://')))
% tmpStr = strrep(institution_websiteStr,'http://','');
% elseif(~isempty(strfind(institution_websiteStr,'https://')))
% tmpStr = strrep(institution_websiteStr,'https://','');
% else
% tmpStr = institution_websiteStr;
% end
% tmpStr = strrep(tmpStr,'www.','');
% tmpStr = strrep(tmpStr,'/','');
% splitStr = strsplit(tmpStr,'.');
% naming_authorityStr = [];
% for split_idx=length(splitStr):-1:1
% naming_authorityStr = [naming_authorityStr splitStr{split_idx}];
% if(split_idx~=1)
% naming_authorityStr = [naming_authorityStr '.'];
% end
% end
% naming_authorityStr= naming_authorityStr(~isspace(naming_authorityStr));
% naming_authorityStr = 'eu.eurogoos';
naming_authorityStr = 'Copernicus Marine In Situ';
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Set collection time
try
ts = datevec(mat_rad.TimeStamp);
time_coll = [datestr(ts, 'yyyy-mm-dd') 'T' datestr(ts, 'HH:MM:SS') 'Z'];
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
try
% Define EDIOS codes, site code, platform code, id and metadata resources
EDIOS_Series_ID = networkData{network_idIndex};
EDIOS_Platform_ID = siteCode;
EDMO_codeIndex = find(not(cellfun('isempty', strfind(stationFields, 'EDMO_code'))));
EDMO_code = stationData{EDMO_codeIndex};
site_code = EDIOS_Series_ID;
platform_code = [EDIOS_Series_ID '-' EDIOS_Platform_ID];
dataID = [EDIOS_Series_ID '-' EDIOS_Platform_ID '_' datestr(mat_rad.TimeStamp, 'yyyy-mm-dd') 'T' datestr(mat_rad.TimeStamp, 'HH:MM:SS') 'Z'];
metadata_pageIndex = find(not(cellfun('isempty', strfind(networkFields, 'metadata_page'))));
TDS_catalog = networkData{metadata_pageIndex};
xlink = ['<sdn_reference xlink:href="' TDS_catalog '" xlink:role="" xlink:type="URL"/>'];
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Gets dimensions
try
time_dim = size(mat_rad.TimeStamp,1);
% time_dim = netcdf.getConstant('unlimited');
lat_dim = length(gridLat);
lon_dim = length(gridLon);
depth_dim = 1;
maxSite_dim = size(siteCode,1);
maxInst_dim = length(EDMO_code);
refMax_dim = 1;
string15_dim = 15;
string50_dim = 50;
string250_dim = 250;
catch err
display(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
% Deletes the eventually present netCDF file with the same name
try
delete(ncfile);
catch err
display(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Build structures containing QC tests parameters
try
maxspd_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_velocity_threshold'))));
Radial_QC_params.VelThr = stationData{maxspd_Index};
var_thr_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_variance_threshold'))));
Radial_QC_params.VarThr = stationData{var_thr_Index};
temp_der_thr_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_temporal_derivative_threshold'))));
Radial_QC_params.TempDerThr.threshold = stationData{temp_der_thr_Index};
med_filt_RCLim_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_median_filter_RCLim'))));
med_filt_AngLim_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_median_filter_AngLim'))));
med_filt_CurLim_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_median_filter_CurLim'))));
Radial_QC_params.MedFilt = [stationData{med_filt_RCLim_Index},stationData{med_filt_AngLim_Index},stationData{med_filt_CurLim_Index}];
avg_rad_bear_min_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_average_radial_bearing_min'))));
avg_rad_bear_max_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_average_radial_bearing_max'))));
Radial_QC_params.AvgRadBear = [stationData{avg_rad_bear_min_Index},stationData{avg_rad_bear_max_Index}];
rad_cnt_Index = find(not(cellfun('isempty', strfind(stationFields, 'radial_QC_radial_count_threshold'))));
Radial_QC_params.RadCnt = stationData{rad_cnt_Index};
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
R2C_err = 1;
end
%%
%% Perform QC tests
try
% Build the names of the files of the previous two hours
[twoHoursBefore, oneHourBefore] = twoPastHours(mat_rad.TimeStamp,temporal_resolution);
Radial_QC_params.TempDerThr.hour2 = [ncFilePath(1:length(ncFilePath)-length(twoHoursBefore.fP)) twoHoursBefore.fP filesep networkData{network_idIndex} '-' stationData{station_idIndex} '_' twoHoursBefore.TS '.nc'];
Radial_QC_params.TempDerThr.hour1 = [ncFilePath(1:length(ncFilePath)-length(oneHourBefore.fP)) oneHourBefore.fP filesep networkData{network_idIndex} '-' stationData{station_idIndex} '_' oneHourBefore.TS '.nc'];
[overall_QCflag, overWater_QCflag, varianceThreshold_QCflag, temporalDerivativeThreshold_QCflag, velocityThreshold_QCflag, medianFilter_QCflag, averageRadialBearing_QC_flag, radialVelocityMedianFiltered, radialCount_QC_flag] = cradAsciiRadialQCtests_v11(mat_rad, Radial_QC_params);
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Set the time, position and depth quality flags
try
% Time quality flag
sdnTime_QCflag = 1;
% Position quality flag
sdnPosition_QCflag = netcdf.getConstant('NC_FILL_BYTE').*int8(ones(length(gridLat),length(gridLon),1));
sdnPosition_QCflag(~isnan(mat_rad.rdva)) = 1;
% Depth quality flag
sdnDepth_QCflag = 1;
catch err
disp(['[' datestr(now) '] - - ERROR in ' mfilename ' -> ' err.message]);
cA2C_err = 1;
end
%%
%% Creates vars with their dimensions
try
nccreate(ncfile,'TIME',...
'Dimensions',{'TIME',time_dim},...
'Datatype','double',...
'Format',ncfmt);
nccreate(ncfile,'LATITUDE',...
'Dimensions',{'LATITUDE',lat_dim},...
'Datatype','single',...
'Format',ncfmt);
nccreate(ncfile,'LONGITUDE',...
'Dimensions',{'LONGITUDE',lon_dim},...
'Datatype','single',...
'Format',ncfmt);
nccreate(ncfile,'crs',...
'Datatype','int16',...
'Format',ncfmt);
nccreate(ncfile,'SDN_CRUISE',...
'Dimensions',{'STRING50',string50_dim, 'TIME',time_dim},...
'Datatype','char',...
'Format',ncfmt);
nccreate(ncfile,'SDN_STATION',...
'Dimensions',{'STRING50',string50_dim, 'TIME',time_dim},...
'Datatype','char',...
'Format',ncfmt);
nccreate(ncfile,'SDN_LOCAL_CDI_ID',...
'Dimensions',{'STRING50',string50_dim, 'TIME',time_dim},...
'Datatype','char',...
'Format',ncfmt);
nccreate(ncfile,'SDN_EDMO_CODE',...
'Dimensions',{'MAXINST',maxInst_dim,'TIME',time_dim},...
'Datatype','int16',...
'Format',ncfmt);
nccreate(ncfile,'SDN_REFERENCES',...
'Dimensions',{'STRING250', string250_dim, 'TIME',time_dim},...
'Datatype','char',...
'Format',ncfmt);
nccreate(ncfile,'SDN_XLINK',...
'Dimensions',{'STRING250',string250_dim, 'REFMAX',refMax_dim, 'TIME',time_dim},...
'Datatype','char',...
'Format',ncfmt);
nccreate(ncfile,'DEPH',...
'Dimensions',{'DEPTH',depth_dim},...
'Datatype','single',...
'FillValue',netcdf.getConstant('NC_FILL_FLOAT'),...
'Format',ncfmt);
nccreate(ncfile,'RDVA',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int16',...
'FillValue', netcdf.getConstant('NC_FILL_SHORT'),...
'Format',ncfmt);
nccreate(ncfile,'DRVA',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int32',...
'FillValue',netcdf.getConstant('NC_FILL_INT'),...
'Format',ncfmt);
nccreate(ncfile,'EWCT',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int16',...
'FillValue', netcdf.getConstant('NC_FILL_SHORT'),...
'Format',ncfmt);
nccreate(ncfile,'NSCT',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int16',...
'FillValue',netcdf.getConstant('NC_FILL_SHORT'),...
'Format',ncfmt);
nccreate(ncfile,'HCSS',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int32',...
'FillValue',netcdf.getConstant('NC_FILL_INT'),...
'Format',ncfmt);
nccreate(ncfile,'EACC',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int16',...
'FillValue',netcdf.getConstant('NC_FILL_SHORT'),...
'Format',ncfmt);
nccreate(ncfile,'TIME_QC',...
'Dimensions',{'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'POSITION_QC',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'DEPH_QC',...
'Dimensions',{'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'QCflag',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'OWTR_QC',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'MDFL_QC',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'VART_QC',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'CSPD_QC',...
'Dimensions',{'LONGITUDE',lon_dim,'LATITUDE',lat_dim, 'DEPTH', depth_dim, 'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'AVRB_QC',...
'Dimensions',{'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'RDCT_QC',...
'Dimensions',{'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'NARX',...
'Dimensions',{'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'NATX',...
'Dimensions',{'TIME',time_dim},...
'Datatype','int8',...
'FillValue',netcdf.getConstant('NC_FILL_BYTE'),...
'Format',ncfmt);
nccreate(ncfile,'SLTR',...
'Dimensions',{'MAXSITE',maxSite_dim,'TIME',time_dim},...
'Datatype','int32',...
'FillValue',netcdf.getConstant('NC_FILL_INT'),...
'Format',ncfmt);
nccreate(ncfile,'SLNR',...
'Dimensions',{'MAXSITE',maxSite_dim,'TIME',time_dim},...
'Datatype','int32',...
'FillValue',netcdf.getConstant('NC_FILL_INT'),...
'Format',ncfmt);
nccreate(ncfile,'SLTT',...
'Dimensions',{'MAXSITE',maxSite_dim,'TIME',time_dim},...
'Datatype','int32',...
'FillValue',netcdf.getConstant('NC_FILL_INT'),...
'Format',ncfmt);
nccreate(ncfile,'SLNT',...
'Dimensions',{'MAXSITE',maxSite_dim,'TIME',time_dim},...
'Datatype','int32',...
'FillValue',netcdf.getConstant('NC_FILL_INT'),...
'Format',ncfmt);
nccreate(ncfile,'SCDR',...
'Dimensions',{'STRING15',string15_dim,'MAXSITE',maxSite_dim,'TIME',time_dim},...
'Datatype','char',...
'FillValue',char(' '),...
'Format',ncfmt);
nccreate(ncfile,'SCDT',...
'Dimensions',{'STRING15',string15_dim,'MAXSITE',maxSite_dim,'TIME',time_dim},...
'Datatype','char',...
'FillValue',char(' '),...
'Format',ncfmt);
%% Creates attributes for the variables
ncwriteatt(ncfile,'TIME','long_name',char('Time'));
ncwriteatt(ncfile,'TIME','standard_name',char('time'));
ncwriteatt(ncfile,'TIME','units',char(time_units));
ncwriteatt(ncfile,'TIME','calendar',char('standard'));
ncwriteatt(ncfile,'TIME','axis',char('T'));
ncwriteatt(ncfile,'TIME','valid_min',double(-90000));
ncwriteatt(ncfile,'TIME','valid_max',double(90000));
ncwriteatt(ncfile,'TIME','uncertainty',char(' '));
ncwriteatt(ncfile,'TIME','sdn_parameter_name',char('Elapsed time (since 1950-01-01T00:00:00Z)'));
ncwriteatt(ncfile,'TIME','sdn_parameter_urn',char('SDN:P01::ELTJLD01'));
ncwriteatt(ncfile,'TIME','sdn_uom_name',char('Days'));
ncwriteatt(ncfile,'TIME','sdn_uom_urn',char('SDN:P06::UTAA'));
ncwriteatt(ncfile,'TIME','ancillary_variables',char('TIME_QC'));
ncwriteatt(ncfile,'LATITUDE','long_name',char('Latitude of each location'));
ncwriteatt(ncfile,'LATITUDE','standard_name',char('latitude'));
ncwriteatt(ncfile,'LATITUDE','units',char('degree_north'));
ncwriteatt(ncfile,'LATITUDE','axis',char('Y'));
ncwriteatt(ncfile,'LATITUDE','valid_min',single(-90));
ncwriteatt(ncfile,'LATITUDE','valid_max',single(90));
ncwriteatt(ncfile,'LATITUDE','uncertainty',char(' '));
ncwriteatt(ncfile,'LATITUDE','sdn_parameter_name',char('Latitude north'));
ncwriteatt(ncfile,'LATITUDE','sdn_parameter_urn',char('SDN:P01::ALATZZ01'));
ncwriteatt(ncfile,'LATITUDE','sdn_uom_name',char('Degrees north'));
ncwriteatt(ncfile,'LATITUDE','sdn_uom_urn',char('SDN:P06::DEGN'));
ncwriteatt(ncfile,'LATITUDE','grid_mapping',char('crs'));
ncwriteatt(ncfile,'LATITUDE','ancillary_variables',char('POSITION_QC'));
ncwriteatt(ncfile,'LONGITUDE','long_name',char('Longitude of each location'));
ncwriteatt(ncfile,'LONGITUDE','standard_name',char('longitude'));
ncwriteatt(ncfile,'LONGITUDE','units',char('degree_east'));
ncwriteatt(ncfile,'LONGITUDE','axis',char('X'));
ncwriteatt(ncfile,'LONGITUDE','valid_min',single(-180));
ncwriteatt(ncfile,'LONGITUDE','valid_max',single(180));
ncwriteatt(ncfile,'LONGITUDE','uncertainty',char(' '));
ncwriteatt(ncfile,'LONGITUDE','sdn_parameter_name',char('Longitude east'));
ncwriteatt(ncfile,'LONGITUDE','sdn_parameter_urn',char('SDN:P01::ALONZZ01'));
ncwriteatt(ncfile,'LONGITUDE','sdn_uom_name',char('Degrees east'));
ncwriteatt(ncfile,'LONGITUDE','sdn_uom_urn',char('SDN:P06::DEGE'));
ncwriteatt(ncfile,'LONGITUDE','grid_mapping',char('crs'));
ncwriteatt(ncfile,'LONGITUDE','ancillary_variables',char('POSITION_QC'));
ncwriteatt(ncfile,'crs','grid_mapping_name',char('latitude_longitude'));
ncwriteatt(ncfile,'crs','epsg_code',char('EPSG:4326'));
ncwriteatt(ncfile,'crs','semi_major_axis',6378137.0);
ncwriteatt(ncfile,'crs','inverse_flattening',298.257223563);
ncwriteatt(ncfile,'SDN_CRUISE','long_name',char('Grid grouping label'));
ncwriteatt(ncfile,'SDN_STATION','long_name',char('Grid label'));
ncwriteatt(ncfile,'SDN_LOCAL_CDI_ID','long_name',char('SeaDataCloud CDI identifier'));
ncwriteatt(ncfile,'SDN_LOCAL_CDI_ID','cf_role',char('grid_id'));
ncwriteatt(ncfile,'SDN_EDMO_CODE','long_name',char('European Directory of Marine Organisations code for the CDI partner'));
ncwriteatt(ncfile,'SDN_EDMO_CODE','units',char('1'));
ncwriteatt(ncfile,'SDN_REFERENCES','long_name',char('Usage metadata reference'));
ncwriteatt(ncfile,'SDN_XLINK','long_name',char('External resource linkages'));
ncwriteatt(ncfile,'DEPH','long_name',char('Depth'));
ncwriteatt(ncfile,'DEPH','standard_name',char('depth'));
ncwriteatt(ncfile,'DEPH','units',char('m'));
ncwriteatt(ncfile,'DEPH','axis',char('Z'));
ncwriteatt(ncfile,'DEPH','valid_min',single(-12000));
ncwriteatt(ncfile,'DEPH','valid_max',single(12000));
ncwriteatt(ncfile,'DEPH','uncertainty',char(' '));
ncwriteatt(ncfile,'DEPH','positive',char('down'));
ncwriteatt(ncfile,'DEPH','reference',char('sea_level'));
ncwriteatt(ncfile,'DEPH','sdn_parameter_name',char('Depth below surface of the water body'));
ncwriteatt(ncfile,'DEPH','sdn_parameter_urn',char('SDN:P01::ADEPZZ01'));
ncwriteatt(ncfile,'DEPH','sdn_uom_name',char('Metres'));
ncwriteatt(ncfile,'DEPH','sdn_uom_urn',char('SDN:P06::ULAA'));
ncwriteatt(ncfile,'DEPH','ancillary_variables',char('DEPH_QC'));
ncwriteatt(ncfile,'DEPH','data_mode',char('R'));
ncwriteatt(ncfile,'RDVA','long_name',char('Radial sea water velocity away from instrument'));
ncwriteatt(ncfile,'RDVA','standard_name',char('radial_sea_water_velocity_away_from_instrument'));
ncwriteatt(ncfile,'RDVA','units',char('m s-1'));
ncwriteatt(ncfile,'RDVA','scale_factor',double(scaleFactor));
ncwriteatt(ncfile,'RDVA','add_offset',double(addOffset));
ncwriteatt(ncfile,'RDVA','sdn_parameter_name',char('Speed of water current (Eulerian measurement) in the water body by directional range-gated radar'));
ncwriteatt(ncfile,'RDVA','sdn_parameter_urn',char('SDN:P01::LCSAWVRD'));
ncwriteatt(ncfile,'RDVA','sdn_uom_name',char('Metres per second'));
ncwriteatt(ncfile,'RDVA','sdn_uom_urn',char('SDN:P06::UVAA'));
ncwriteatt(ncfile,'RDVA','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'RDVA','valid_min',int16((-10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'RDVA','valid_max',int16((10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'RDVA','ancillary_variables',char('QCflag, OWTR_QC, MDFL_QC, CSPD_QC, VART_QC, RDCT_QC'));
ncwriteatt(ncfile,'RDVA','data_mode',char('R'));
ncwriteatt(ncfile,'DRVA','long_name',char('Direction of radial vector away from instrument'));
ncwriteatt(ncfile,'DRVA','standard_name',char('direction_of_radial_vector_away_from_instrument'));
ncwriteatt(ncfile,'DRVA','units',char('degree_true'));
ncwriteatt(ncfile,'DRVA','scale_factor',double(scaleFactor));
ncwriteatt(ncfile,'DRVA','add_offset',double(addOffset));
ncwriteatt(ncfile,'DRVA','sdn_parameter_name',char('Direction (towards) of water current (Eulerian measurement) in the water body by directional range-gated radar'));
ncwriteatt(ncfile,'DRVA','sdn_parameter_urn',char('SDN:P01::LCDAWVRD'));
ncwriteatt(ncfile,'DRVA','sdn_uom_name',char('Degrees True'));
ncwriteatt(ncfile,'DRVA','sdn_uom_urn',char('SDN:P06::UABB'));
ncwriteatt(ncfile,'DRVA','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'DRVA','valid_min',int32(0));
ncwriteatt(ncfile,'DRVA','valid_max',int32((360-addOffset)./scaleFactor));
ncwriteatt(ncfile,'DRVA','ancillary_variables',char('QCflag, OWTR_QC, MDFL_QC, AVRB_QC, RDCT_QC'));
ncwriteatt(ncfile,'DRVA','data_mode',char('R'));
ncwriteatt(ncfile,'EWCT','long_name',char('West-east current component'));
ncwriteatt(ncfile,'EWCT','standard_name',char('eastward_sea_water_velocity'));
ncwriteatt(ncfile,'EWCT','units',char('m s-1'));
ncwriteatt(ncfile,'EWCT','scale_factor',double(scaleFactor));
ncwriteatt(ncfile,'EWCT','add_offset',double(addOffset));
ncwriteatt(ncfile,'EWCT','ioos_category',char('Currents'));
ncwriteatt(ncfile,'EWCT','coordsys',char('geographic'));
ncwriteatt(ncfile,'EWCT','sdn_parameter_name',char('Eastward current velocity in the water body'));
ncwriteatt(ncfile,'EWCT','sdn_parameter_urn',char('SDN:P01::LCEWZZ01'));
ncwriteatt(ncfile,'EWCT','sdn_uom_name',char('Metres per second'));
ncwriteatt(ncfile,'EWCT','sdn_uom_urn',char('SDN:P06::UVAA'));
ncwriteatt(ncfile,'EWCT','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'EWCT','valid_min',int16((-10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'EWCT','valid_max',int16((10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'EWCT','ancillary_variables',char('QCflag, OWTR_QC, MDFL_QC, CSPD_QC, VART_QC, AVRB_QC, RDCT_QC'));
ncwriteatt(ncfile,'EWCT','data_mode',char('R'));
ncwriteatt(ncfile,'NSCT','long_name',char('South-north current component'));
ncwriteatt(ncfile,'NSCT','standard_name',char('northward_sea_water_velocity'));
ncwriteatt(ncfile,'NSCT','units',char('m s-1'));
ncwriteatt(ncfile,'NSCT','scale_factor',double(scaleFactor));
ncwriteatt(ncfile,'NSCT','add_offset',double(addOffset));
ncwriteatt(ncfile,'NSCT','ioos_category',char('Currents'));
ncwriteatt(ncfile,'NSCT','coordsys',char('geographic'));
ncwriteatt(ncfile,'NSCT','sdn_parameter_name',char('Northward current velocity in the water body'));
ncwriteatt(ncfile,'NSCT','sdn_parameter_urn',char('SDN:P01::LCNSZZ01'));
ncwriteatt(ncfile,'NSCT','sdn_uom_name',char('Metres per second'));
ncwriteatt(ncfile,'NSCT','sdn_uom_urn',char('SDN:P06::UVAA'));
ncwriteatt(ncfile,'NSCT','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'NSCT','valid_min',int16((-10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'NSCT','valid_max',int16((10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'NSCT','ancillary_variables',char('QCflag, OWTR_QC, MDFL_QC, CSPD_QC, VART_QC, AVRB_QC, RDCT_QC'));
ncwriteatt(ncfile,'NSCT','data_mode',char('R'));
ncwriteatt(ncfile,'HCSS','long_name',char('Radial variance of current velocity over coverage period'));
ncwriteatt(ncfile,'HCSS','standard_name',char(' '));
ncwriteatt(ncfile,'HCSS','units',char('m2 s-2'));
ncwriteatt(ncfile,'HCSS','valid_min',int32((-10-addOffset)./(scaleFactor^2)));
ncwriteatt(ncfile,'HCSS','valid_max',int32((10-addOffset)./(scaleFactor^2)));
ncwriteatt(ncfile,'HCSS','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'HCSS','scale_factor',double(scaleFactor^2));
ncwriteatt(ncfile,'HCSS','add_offset',double(addOffset));
ncwriteatt(ncfile,'HCSS','sdn_parameter_name',char(' '));
ncwriteatt(ncfile,'HCSS','sdn_parameter_urn',char(' '));
ncwriteatt(ncfile,'HCSS','sdn_uom_name',char('Square metres per second squared'));
ncwriteatt(ncfile,'HCSS','sdn_uom_urn',char('SDN:P06::SQM2'));
ncwriteatt(ncfile,'HCSS','ancillary_variables',char('QCflag, VART_QC'));
ncwriteatt(ncfile,'HCSS','data_mode',char('R'));
ncwriteatt(ncfile,'EACC','long_name',char('Radial accuracy of current velocity over coverage period'));
ncwriteatt(ncfile,'EACC','standard_name',char(' '));
ncwriteatt(ncfile,'EACC','units',char('m s-1'));
ncwriteatt(ncfile,'EACC','valid_min',int16((-10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'EACC','valid_max',int16((10-addOffset)./scaleFactor));
ncwriteatt(ncfile,'EACC','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'EACC','scale_factor',double(scaleFactor));
ncwriteatt(ncfile,'EACC','add_offset',double(addOffset));
ncwriteatt(ncfile,'EACC','sdn_parameter_name',char(' '));
ncwriteatt(ncfile,'EACC','sdn_parameter_urn',char(' '));
ncwriteatt(ncfile,'EACC','sdn_uom_name',char('Metres per second'));
ncwriteatt(ncfile,'EACC','sdn_uom_urn',char('SDN:P06::UVAA'));
ncwriteatt(ncfile,'EACC','ancillary_variables',char('QCflag, VART_QC'));
ncwriteatt(ncfile,'EACC','data_mode',char('R'));
ncwriteatt(ncfile,'TIME_QC','long_name',char('Time quality flag'));
ncwriteatt(ncfile,'TIME_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'TIME_QC','units',char('1'));
ncwriteatt(ncfile,'TIME_QC','valid_min',int8(0));
ncwriteatt(ncfile,'TIME_QC','valid_max',int8(9));
ncwriteatt(ncfile,'TIME_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'TIME_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'TIME_QC','comment',char('OceanSITES quality flagging for temporal coordinate.'));
ncwriteatt(ncfile,'TIME_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'TIME_QC','add_offset',int8(0));
ncwriteatt(ncfile,'POSITION_QC','long_name',char('Position quality flag'));
ncwriteatt(ncfile,'POSITION_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'POSITION_QC','units',char('1'));
ncwriteatt(ncfile,'POSITION_QC','valid_min',int8(0));
ncwriteatt(ncfile,'POSITION_QC','valid_max',int8(9));
ncwriteatt(ncfile,'POSITION_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'POSITION_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'POSITION_QC','comment',char('OceanSITES quality flagging for position coordinates.'));
ncwriteatt(ncfile,'POSITION_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'POSITION_QC','add_offset',int8(0));
ncwriteatt(ncfile,'DEPH_QC','long_name',char('Depth quality flag'));
ncwriteatt(ncfile,'DEPH_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'DEPH_QC','units',char('1'));
ncwriteatt(ncfile,'DEPH_QC','valid_min',int8(0));
ncwriteatt(ncfile,'DEPH_QC','valid_max',int8(9));
ncwriteatt(ncfile,'DEPH_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'DEPH_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'DEPH_QC','comment',char('OceanSITES quality flagging for depth coordinate.'));
ncwriteatt(ncfile,'DEPH_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'DEPH_QC','add_offset',int8(0));
ncwriteatt(ncfile,'QCflag','long_name',char('Overall quality flag'));
ncwriteatt(ncfile,'QCflag','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'QCflag','units',char('1'));
ncwriteatt(ncfile,'QCflag','valid_min',int8(0));
ncwriteatt(ncfile,'QCflag','valid_max',int8(9));
ncwriteatt(ncfile,'QCflag','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'QCflag','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'QCflag','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'QCflag','comment',char('OceanSITES quality flagging for all QC tests.'));
ncwriteatt(ncfile,'QCflag','scale_factor',int8(1));
ncwriteatt(ncfile,'QCflag','add_offset',int8(0));
ncwriteatt(ncfile,'OWTR_QC','long_name',char('Over-water quality flag'));
ncwriteatt(ncfile,'OWTR_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'OWTR_QC','units',char('1'));
ncwriteatt(ncfile,'OWTR_QC','valid_min',int8(0));
ncwriteatt(ncfile,'OWTR_QC','valid_max',int8(9));
ncwriteatt(ncfile,'OWTR_QC','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'OWTR_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'OWTR_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'OWTR_QC','comment',char('OceanSITES quality flagging for Over-water QC test.'));
ncwriteatt(ncfile,'OWTR_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'OWTR_QC','add_offset',int8(0));
ncwriteatt(ncfile,'MDFL_QC','long_name',char('Median filter quality flag'));
ncwriteatt(ncfile,'MDFL_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'MDFL_QC','units',char('1'));
ncwriteatt(ncfile,'MDFL_QC','valid_min',int8(0));
ncwriteatt(ncfile,'MDFL_QC','valid_max',int8(9));
ncwriteatt(ncfile,'MDFL_QC','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'MDFL_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'MDFL_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'MDFL_QC','comment',char(['OceanSITES quality flagging for Median Filter QC test. ' ...
'Threshold set to ' num2str(Radial_QC_params.MedFilt(1)) ' km, ' num2str(Radial_QC_params.MedFilt(2)) ' deg, ' ...
num2str(Radial_QC_params.MedFilt(3)) ' m/s, ']));
ncwriteatt(ncfile,'MDFL_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'MDFL_QC','add_offset',int8(0));
ncwriteatt(ncfile,'VART_QC','long_name',char('Variance threshold quality flag'));
ncwriteatt(ncfile,'VART_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'VART_QC','units',char('1'));
ncwriteatt(ncfile,'VART_QC','valid_min',int8(0));
ncwriteatt(ncfile,'VART_QC','valid_max',int8(9));
ncwriteatt(ncfile,'VART_QC','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'VART_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'VART_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'VART_QC','comment',char(['OceanSITES quality flagging for variance threshold QC test. ' ...
'Threshold set to ' num2str(Radial_QC_params.VarThr) ' m2/s2. ']));
ncwriteatt(ncfile,'VART_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'VART_QC','add_offset',int8(0));
ncwriteatt(ncfile,'CSPD_QC','long_name',char('Velocity threshold quality flag'));
ncwriteatt(ncfile,'CSPD_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'CSPD_QC','units',char('1'));
ncwriteatt(ncfile,'CSPD_QC','valid_min',int8(0));
ncwriteatt(ncfile,'CSPD_QC','valid_max',int8(9));
ncwriteatt(ncfile,'CSPD_QC','coordinates',char('TIME DEPH LATITUDE LONGITUDE'));
ncwriteatt(ncfile,'CSPD_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'CSPD_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'CSPD_QC','comment',char(['OceanSITES quality flagging for Velocity threshold QC test. ' ...
'Threshold set to ' num2str(Radial_QC_params.VelThr) ' m/s.']));
ncwriteatt(ncfile,'CSPD_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'CSPD_QC','add_offset',int8(0));
ncwriteatt(ncfile,'AVRB_QC','long_name',char('Average radial bearing quality flag'));
ncwriteatt(ncfile,'AVRB_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'AVRB_QC','units',char('1'));
ncwriteatt(ncfile,'AVRB_QC','valid_min',int8(0));
ncwriteatt(ncfile,'AVRB_QC','valid_max',int8(9));
ncwriteatt(ncfile,'AVRB_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'AVRB_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'AVRB_QC','comment',char(['OceanSITES quality flagging for Average Radial Bearing QC test. Thresholds set to [' num2str(Radial_QC_params.AvgRadBear(1)) '-' num2str(Radial_QC_params.AvgRadBear(2)) '] deg.']));
ncwriteatt(ncfile,'AVRB_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'AVRB_QC','add_offset',int8(0));
ncwriteatt(ncfile,'RDCT_QC','long_name',char('Radial count quality flag'));
ncwriteatt(ncfile,'RDCT_QC','conventions',char('Copernicus Marine In Situ reference table 2'));
ncwriteatt(ncfile,'RDCT_QC','units',char('1'));
ncwriteatt(ncfile,'RDCT_QC','valid_min',int8(0));
ncwriteatt(ncfile,'RDCT_QC','valid_max',int8(9));
ncwriteatt(ncfile,'RDCT_QC','flag_values',int8([0 1 2 3 4 5 6 7 8 9]));
ncwriteatt(ncfile,'RDCT_QC','flag_meanings',char('no_qc_performed good_data probably_good_data bad_data_that_are_potentially_correctable bad_data value_changed value_below_detection nominal_value interpolated_value missing_value'));
ncwriteatt(ncfile,'RDCT_QC','comment',char(['OceanSITES quality flagging for Radial Count QC test. Thresholds set to ' num2str(Radial_QC_params.RadCnt) ' vectors.']));
ncwriteatt(ncfile,'RDCT_QC','scale_factor',int8(1));
ncwriteatt(ncfile,'RDCT_QC','add_offset',int8(0));
ncwriteatt(ncfile,'NARX','long_name',char('Number of receive antennas'));
ncwriteatt(ncfile,'NARX','standard_name',char(' '));
ncwriteatt(ncfile,'NARX','units',char('1'));
ncwriteatt(ncfile,'NARX','valid_min',int8(0));
ncwriteatt(ncfile,'NARX','valid_max',int8(127));
ncwriteatt(ncfile,'NARX','scale_factor',int8(1));
ncwriteatt(ncfile,'NARX','add_offset',int8(0));
ncwriteatt(ncfile,'NARX','sdn_parameter_name',char(' '));
ncwriteatt(ncfile,'NARX','sdn_parameter_urn',char(' '));
ncwriteatt(ncfile,'NARX','sdn_uom_name',char('Dimensionless'));
ncwriteatt(ncfile,'NARX','sdn_uom_urn',char('SDN:P06::UUUU'));
ncwriteatt(ncfile,'NARX','data_mode',char('R'));
ncwriteatt(ncfile,'NATX','long_name',char('Number of transmit antennas'));
ncwriteatt(ncfile,'NATX','standard_name',char(' '));
ncwriteatt(ncfile,'NATX','units',char('1'));
ncwriteatt(ncfile,'NATX','valid_min',int8(0));
ncwriteatt(ncfile,'NATX','valid_max',int8(127));
ncwriteatt(ncfile,'NATX','scale_factor',int8(1));
ncwriteatt(ncfile,'NATX','add_offset',int8(0));
ncwriteatt(ncfile,'NATX','sdn_parameter_name',char(' '));
ncwriteatt(ncfile,'NATX','sdn_parameter_urn',char(' '));
ncwriteatt(ncfile,'NATX','sdn_uom_name',char('Dimensionless'));
ncwriteatt(ncfile,'NATX','sdn_uom_urn',char('SDN:P06::UUUU'));
ncwriteatt(ncfile,'NATX','data_mode',char('R'));
ncwriteatt(ncfile,'SLTR','long_name',char('Receive antenna latitudes'));
ncwriteatt(ncfile,'SLTR','standard_name',char('latitude'));
ncwriteatt(ncfile,'SLTR','units','degree_north');
ncwriteatt(ncfile,'SLTR','valid_min',int32((-90-addOffset)./scaleFactor));
ncwriteatt(ncfile,'SLTR','valid_max',int32((90-addOffset)./scaleFactor));
ncwriteatt(ncfile,'SLTR','coordinates',char('TIME MAXSITE'));
ncwriteatt(ncfile,'SLTR','scale_factor',single(scaleFactor));
ncwriteatt(ncfile,'SLTR','add_offset',single(addOffset));
ncwriteatt(ncfile,'SLTR','sdn_parameter_name',char('Latitude north'));
ncwriteatt(ncfile,'SLTR','sdn_parameter_urn',char('SDN:P01::ALATZZ01'));
ncwriteatt(ncfile,'SLTR','sdn_uom_name',char('Degrees north'));
ncwriteatt(ncfile,'SLTR','sdn_uom_urn',char('SDN:P06::DEGN'));
ncwriteatt(ncfile,'SLTR','data_mode',char('R'));
ncwriteatt(ncfile,'SLNR','long_name',char('Receive antenna longitudes'));
ncwriteatt(ncfile,'SLNR','standard_name',char('longitude'));
ncwriteatt(ncfile,'SLNR','units','degree_east');
ncwriteatt(ncfile,'SLNR','valid_min',int32((-180-addOffset)./scaleFactor));
ncwriteatt(ncfile,'SLNR','valid_max',int32((180-addOffset)./scaleFactor));
ncwriteatt(ncfile,'SLNR','coordinates',char('TIME MAXSITE'));
ncwriteatt(ncfile,'SLNR','scale_factor',single(scaleFactor));
ncwriteatt(ncfile,'SLNR','add_offset',single(addOffset));
ncwriteatt(ncfile,'SLNR','sdn_parameter_name',char('Longitude east'));
ncwriteatt(ncfile,'SLNR','sdn_parameter_urn',char('SDN:P01::ALONZZ01'));
ncwriteatt(ncfile,'SLNR','sdn_uom_name',char('Degrees east'));
ncwriteatt(ncfile,'SLNR','sdn_uom_urn',char('SDN:P06::DEGE'));
ncwriteatt(ncfile,'SLNR','data_mode',char('R'));
ncwriteatt(ncfile,'SLTT','long_name',char('Transmit antenna latitudes'));
ncwriteatt(ncfile,'SLTT','standard_name',char('latitude'));
ncwriteatt(ncfile,'SLTT','units','degree_north');
ncwriteatt(ncfile,'SLTT','valid_min',int32((-90-addOffset)./scaleFactor));
ncwriteatt(ncfile,'SLTT','valid_max',int32((90-addOffset)./scaleFactor));
ncwriteatt(ncfile,'SLTT','coordinates',char('TIME MAXSITE'));
ncwriteatt(ncfile,'SLTT','scale_factor',single(scaleFactor));
ncwriteatt(ncfile,'SLTT','add_offset',single(addOffset));
ncwriteatt(ncfile,'SLTT','sdn_parameter_name',char('Latitude north'));
ncwriteatt(ncfile,'SLTT','sdn_parameter_urn',char('SDN:P01::ALATZZ01'));
ncwriteatt(ncfile,'SLTT','sdn_uom_name',char('Degrees north'));
ncwriteatt(ncfile,'SLTT','sdn_uom_urn',char('SDN:P06::DEGN'));
ncwriteatt(ncfile,'SLTT','data_mode',char('R'));
ncwriteatt(ncfile,'SLNT','long_name',char('Transmit antenna longitudes'));