forked from edamontology/edam-sandbox
-
Notifications
You must be signed in to change notification settings - Fork 0
/
#shite#
518 lines (512 loc) · 57.8 KB
/
#shite#
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
wikiepediaLinkMissing.ipynb
Wikipedia link missing from EDAM Topic concept.
Documentation: https://github.com/edamontology/edamverify/blob/master/docs/wikiepediaLinkMissing.md
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/Simplified_molecular_input_line_entry_specification"/> <rdfs:seeAlso rdf:resource="https://en.wikipedia.org/wiki/Information_Hyperlinked_over_Proteins"/>
rdfs:seeAlsohttp://en.wikipedia.org/wiki/List_of_file_formats
<oboInOwl:hasExactSynonym rdf:resource="https://en.wikipedia.org/wiki/Pathology"/>
Set constants for script return values. Load EDAM_dev.owl from GitHub into an RDF graph.
Loading graph ...done!
Define SPARQL query to extract ID, term and subset of all concepts. Run the query.
No output
Analyse results of query.
http://edamontology.org/topic_3360 ( Biomarkers ) https://en.wikipedia.org/wiki/Biomarker https://en.wikipedia.org/wiki/Biomarker
http://edamontology.org/topic_3377 ( Safety sciences ) None None
http://edamontology.org/topic_0724 ( Protein families ) None None
http://edamontology.org/topic_0100 ( Nucleic acid restriction ) None None
http://edamontology.org/topic_0084 ( Phylogeny ) https://en.wikipedia.org/wiki/Phylogenetic_tree https://en.wikipedia.org/wiki/Phylogenetic_tree
http://edamontology.org/topic_0084 ( Phylogeny ) http://purl.bioontology.org/ontology/MSH/D010802 http://purl.bioontology.org/ontology/MSH/D010802
http://edamontology.org/topic_3346 ( Sequence search ) None None
http://edamontology.org/topic_1811 ( Prokaryotes and Archaea ) None None
http://edamontology.org/topic_3384 ( Medical imaging ) https://en.wikipedia.org/wiki/Medical_imaging https://en.wikipedia.org/wiki/Medical_imaging
http://edamontology.org/topic_2232 ( Lipoproteins ) None None
http://edamontology.org/topic_3423 ( Complementary medicine ) https://en.wikipedia.org/wiki/Alternative_medicine https://en.wikipedia.org/wiki/Alternative_medicine
http://edamontology.org/topic_0754 ( Signaling pathways ) None None
http://edamontology.org/topic_0611 ( Electron microscopy ) https://en.wikipedia.org/wiki/Electron_microscope https://en.wikipedia.org/wiki/Electron_microscope
http://edamontology.org/topic_3324 ( Infectious disease ) None None
http://edamontology.org/topic_0663 ( tRNA ) None None
http://edamontology.org/topic_3400 ( Allergy, clinical immunology and immunotherapeutics ) https://en.wikipedia.org/wiki/Allergy https://en.wikipedia.org/wiki/Allergy
http://edamontology.org/topic_3400 ( Allergy, clinical immunology and immunotherapeutics ) https://en.wikipedia.org/wiki/Immunology#Clinical_immunology https://en.wikipedia.org/wiki/Immunology#Clinical_immunology
http://edamontology.org/topic_3400 ( Allergy, clinical immunology and immunotherapeutics ) https://en.wikipedia.org/wiki/Immunotherapy https://en.wikipedia.org/wiki/Immunotherapy
http://edamontology.org/topic_2814 ( Protein structure analysis ) https://en.wikipedia.org/wiki/Protein_structure https://en.wikipedia.org/wiki/Protein_structure
http://edamontology.org/topic_0209 ( Medicinal chemistry ) https://en.wikipedia.org/wiki/Medicinal_chemistry https://en.wikipedia.org/wiki/Medicinal_chemistry
http://edamontology.org/topic_3056 ( Population genetics ) https://en.wikipedia.org/wiki/Population_genetics https://en.wikipedia.org/wiki/Population_genetics
http://edamontology.org/topic_0135 ( Protein microarrays ) None None
http://edamontology.org/topic_3393 ( Quality affairs ) None None
http://edamontology.org/topic_0128 ( Protein interactions ) https://en.wikipedia.org/wiki/Protein%E2%80%93protein_interaction https://en.wikipedia.org/wiki/Protein%E2%80%93protein_interaction
http://edamontology.org/topic_3678 ( Experimental design and studies ) None None
http://edamontology.org/topic_0748 ( Protein sites and features ) None None
http://edamontology.org/topic_0624 ( Chromosomes ) None None
http://edamontology.org/topic_0111 ( Promoters ) None None
http://edamontology.org/topic_3526 ( Protein-protein interactions ) None None
http://edamontology.org/topic_3515 ( Protein-drug interactions ) None None
http://edamontology.org/topic_0780 ( Botany ) https://en.wikipedia.org/wiki/Botany https://en.wikipedia.org/wiki/Botany
http://edamontology.org/topic_3539 ( Protein domains ) None None
http://edamontology.org/topic_0078 ( Proteins ) https://en.wikipedia.org/wiki/Protein https://en.wikipedia.org/wiki/Protein
http://edamontology.org/topic_0078 ( Proteins ) http://purl.bioontology.org/ontology/MSH/D020539 http://purl.bioontology.org/ontology/MSH/D020539
http://edamontology.org/topic_3055 ( Quantitative genetics ) https://en.wikipedia.org/wiki/Quantitative_genetics https://en.wikipedia.org/wiki/Quantitative_genetics
http://edamontology.org/topic_0767 ( Protein and peptide identification ) None None
http://edamontology.org/topic_3572 ( Data quality management ) https://en.wikipedia.org/wiki/Data_quality https://en.wikipedia.org/wiki/Data_quality
http://edamontology.org/topic_3444 ( MRI ) https://en.wikipedia.org/wiki/Magnetic_resonance_imaging https://en.wikipedia.org/wiki/Magnetic_resonance_imaging
http://edamontology.org/topic_0593 ( NMR ) https://en.wikipedia.org/wiki/Nuclear_magnetic_resonance_spectroscopy https://en.wikipedia.org/wiki/Nuclear_magnetic_resonance_spectroscopy
http://edamontology.org/topic_3541 ( Protein post-translational modifications ) None None
http://edamontology.org/topic_3118 ( Protein topological domains ) None None
http://edamontology.org/topic_0605 ( Informatics ) https://en.wikipedia.org/wiki/Informatics https://en.wikipedia.org/wiki/Informatics
http://edamontology.org/topic_0640 ( Nucleic acid sequence analysis ) None None
http://edamontology.org/topic_3656 ( Immunoprecipitation experiment ) https://en.wikipedia.org/wiki/Immunoprecipitation https://en.wikipedia.org/wiki/Immunoprecipitation
http://edamontology.org/topic_3524 ( Simulation experiment ) None None
http://edamontology.org/topic_3372 ( Software engineering ) https://en.wikipedia.org/wiki/Software_engineering https://en.wikipedia.org/wiki/Software_engineering
http://edamontology.org/topic_3043 ( Protein sequences ) None None
http://edamontology.org/topic_0182 ( Sequence alignment ) None None
http://edamontology.org/topic_3342 ( Translational medicine ) None None
http://edamontology.org/topic_0623 ( Gene and protein families ) https://en.wikipedia.org/wiki/Gene_family https://en.wikipedia.org/wiki/Gene_family
http://edamontology.org/topic_0623 ( Gene and protein families ) https://en.wikipedia.org/wiki/Protein_family https://en.wikipedia.org/wiki/Protein_family
http://edamontology.org/topic_0922 ( Primers ) None None
http://edamontology.org/topic_0134 ( Mass spectrometry ) None None
http://edamontology.org/topic_3365 ( Data architecture, analysis and design ) https://en.wikipedia.org/wiki/Data_architecture https://en.wikipedia.org/wiki/Data_architecture
http://edamontology.org/topic_0595 ( Protein classification ) None None
http://edamontology.org/topic_0199 ( Genetic variation ) http://purl.bioontology.org/ontology/MSH/D014644 http://purl.bioontology.org/ontology/MSH/D014644
http://edamontology.org/topic_0199 ( Genetic variation ) https://en.wikipedia.org/wiki/Genetic_variation https://en.wikipedia.org/wiki/Genetic_variation
http://edamontology.org/topic_3343 ( Compound libraries and screening ) https://en.wikipedia.org/wiki/Chemical_library https://en.wikipedia.org/wiki/Chemical_library
http://edamontology.org/topic_0174 ( Ab initio structure prediction ) None None
http://edamontology.org/topic_3406 ( Ear, nose and throat medicine ) None None
http://edamontology.org/topic_3540 ( Protein key folding sites ) None None
http://edamontology.org/topic_0607 ( Laboratory information management ) https://en.wikipedia.org/wiki/Laboratory_information_management_system https://en.wikipedia.org/wiki/Laboratory_information_management_system
http://edamontology.org/topic_3855 ( Environmental science ) https://en.wikipedia.org/wiki/Environmental_science https://en.wikipedia.org/wiki/Environmental_science
http://edamontology.org/topic_3298 ( Phenomics ) https://en.wikipedia.org/wiki/Phenomics https://en.wikipedia.org/wiki/Phenomics
http://edamontology.org/topic_3307 ( Computational biology ) https://en.wikipedia.org/wiki/Computational_biology https://en.wikipedia.org/wiki/Computational_biology
http://edamontology.org/topic_0786 ( Arabidopsis ) None None
http://edamontology.org/topic_0208 ( Pharmacogenomics ) https://en.wikipedia.org/wiki/Pharmacogenomics https://en.wikipedia.org/wiki/Pharmacogenomics
http://edamontology.org/topic_3955 ( Fluxomics ) None None
http://edamontology.org/topic_3292 ( Biochemistry ) https://en.wikipedia.org/wiki/Biochemistry https://en.wikipedia.org/wiki/Biochemistry
http://edamontology.org/topic_3074 ( Protein feature detection ) None None
http://edamontology.org/topic_3399 ( Geriatric medicine ) None None
http://edamontology.org/topic_0641 ( Repeat sequences ) None None
http://edamontology.org/topic_1456 ( Protein membrane regions ) None None
http://edamontology.org/topic_3315 ( Mathematics ) https://en.wikipedia.org/wiki/Mathematics https://en.wikipedia.org/wiki/Mathematics
http://edamontology.org/topic_3306 ( Biophysics ) https://en.wikipedia.org/wiki/Biophysics https://en.wikipedia.org/wiki/Biophysics
http://edamontology.org/topic_3575 ( Tropical medicine ) https://en.wikipedia.org/wiki/Tropical_medicine https://en.wikipedia.org/wiki/Tropical_medicine
http://edamontology.org/topic_3369 ( Chemical biology ) https://en.wikipedia.org/wiki/Chemical_biology https://en.wikipedia.org/wiki/Chemical_biology
http://edamontology.org/topic_0108 ( Protein expression ) https://en.wikipedia.org/wiki/Protein_expression https://en.wikipedia.org/wiki/Protein_expression
http://edamontology.org/topic_2846 ( Gene regulatory networks ) None None
http://edamontology.org/topic_2867 ( VNTR ) None None
http://edamontology.org/topic_3570 ( Pure mathematics ) https://en.wikipedia.org/wiki/Pure_mathematics https://en.wikipedia.org/wiki/Pure_mathematics
http://edamontology.org/topic_3305 ( Public health and epidemiology ) None None
http://edamontology.org/topic_3078 ( Genes and proteins resources ) None None
http://edamontology.org/topic_3302 ( Parasitology ) https://en.wikipedia.org/wiki/Parasitology https://en.wikipedia.org/wiki/Parasitology
http://edamontology.org/topic_2259 ( Systems biology ) http://en.wikipedia.org/wiki/Systems_biology http://en.wikipedia.org/wiki/Systems_biology
http://edamontology.org/topic_2259 ( Systems biology ) http://purl.bioontology.org/ontology/MSH/D049490 http://purl.bioontology.org/ontology/MSH/D049490
http://edamontology.org/topic_3303 ( Medicine ) https://en.wikipedia.org/wiki/Medicine https://en.wikipedia.org/wiki/Medicine
http://edamontology.org/topic_0166 ( Protein structural motifs and surfaces ) None None
http://edamontology.org/topic_3301 ( Microbiology ) https://en.wikipedia.org/wiki/Microbiology https://en.wikipedia.org/wiki/Microbiology
http://edamontology.org/topic_3388 ( Molecular medicine ) None None
http://edamontology.org/topic_0130 ( Protein folding, stability and design ) https://en.wikipedia.org/wiki/Protein_folding https://en.wikipedia.org/wiki/Protein_folding
http://edamontology.org/topic_0130 ( Protein folding, stability and design ) https://en.wikipedia.org/wiki/Protein_design https://en.wikipedia.org/wiki/Protein_design
http://edamontology.org/topic_0644 ( Proteome ) None None
http://edamontology.org/topic_0660 ( rRNA ) None None
http://edamontology.org/topic_3569 ( Applied mathematics ) https://en.wikipedia.org/wiki/Applied_mathematics https://en.wikipedia.org/wiki/Applied_mathematics
http://edamontology.org/topic_2640 ( Oncology ) None None
http://edamontology.org/topic_3531 ( Protein super-secondary structure ) None None
http://edamontology.org/topic_0659 ( Functional, regulatory and non-coding RNA ) https://en.wikipedia.org/wiki/Non-coding_RNA https://en.wikipedia.org/wiki/Non-coding_RNA
http://edamontology.org/topic_2815 ( Human biology ) https://en.wikipedia.org/wiki/Human_biology https://en.wikipedia.org/wiki/Human_biology
http://edamontology.org/topic_3934 ( Cytometry ) https://en.wikipedia.org/wiki/Cytometry https://en.wikipedia.org/wiki/Cytometry
http://edamontology.org/topic_2754 ( Introns ) None None
http://edamontology.org/topic_3571 ( Data governance ) http://purl.bioontology.org/ontology/MSH/D030541 http://purl.bioontology.org/ontology/MSH/D030541
http://edamontology.org/topic_3571 ( Data governance ) https://en.wikipedia.org/wiki/Data_governance https://en.wikipedia.org/wiki/Data_governance
http://edamontology.org/topic_2399 ( Gene transcription ) None None
http://edamontology.org/topic_2225 ( Protein databases ) None None
http://edamontology.org/topic_0622 ( Genomics ) http://purl.bioontology.org/ontology/MSH/D023281 http://purl.bioontology.org/ontology/MSH/D023281
http://edamontology.org/topic_0622 ( Genomics ) https://en.wikipedia.org/wiki/Genomics https://en.wikipedia.org/wiki/Genomics
http://edamontology.org/topic_3368 ( Biomaterials ) https://en.wikipedia.org/wiki/Biomaterial https://en.wikipedia.org/wiki/Biomaterial
http://edamontology.org/topic_3323 ( Metabolic disease ) None None
http://edamontology.org/topic_0780 ( Plant biology ) https://en.wikipedia.org/wiki/Botany https://en.wikipedia.org/wiki/Botany
http://edamontology.org/topic_2269 ( Statistics and probability ) http://en.wikipedia.org/wiki/Biostatistics http://en.wikipedia.org/wiki/Biostatistics
http://edamontology.org/topic_2269 ( Statistics and probability ) https://en.wikipedia.org/wiki/Probability https://en.wikipedia.org/wiki/Probability
http://edamontology.org/topic_2269 ( Statistics and probability ) https://en.wikipedia.org/wiki/Statistics https://en.wikipedia.org/wiki/Statistics
http://edamontology.org/topic_2269 ( Statistics and probability ) http://purl.bioontology.org/ontology/MSH/D056808 http://purl.bioontology.org/ontology/MSH/D056808
http://edamontology.org/topic_3521 ( 2D PAGE experiment ) None None
http://edamontology.org/topic_3411 ( Gynaecology and obstetrics ) None None
http://edamontology.org/topic_0639 ( Protein sequence analysis ) None None
http://edamontology.org/topic_1302 ( PolyA signal or sites ) None None
http://edamontology.org/topic_3318 ( Physics ) https://en.wikipedia.org/wiki/Physics https://en.wikipedia.org/wiki/Physics
http://edamontology.org/topic_2397 ( Exons ) None None
http://edamontology.org/topic_3386 ( Laboratory animal science ) https://en.wikipedia.org/wiki/Animal_testing https://en.wikipedia.org/wiki/Animal_testing
http://edamontology.org/topic_3032 ( Primer or probe design ) None None
http://edamontology.org/topic_0003 ( Topic ) http://www.onto-med.de/ontologies/gfo.owl#Category http://www.onto-med.de/ontologies/gfo.owl#Category
http://edamontology.org/topic_0003 ( Topic ) http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#quality http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#quality
http://edamontology.org/topic_0003 ( Topic ) http://bioontology.org/ontologies/ResearchArea.owl#Area_of_Research http://bioontology.org/ontologies/ResearchArea.owl#Area_of_Research
http://edamontology.org/topic_0003 ( Topic ) http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Method http://onto.eva.mpg.de/ontologies/gfo-bio.owl#Method
http://edamontology.org/topic_0003 ( Topic ) http://www.ifomis.org/bfo/1.1/snap#Quality http://www.ifomis.org/bfo/1.1/snap#Quality
http://edamontology.org/topic_0003 ( Topic ) http://www.ifomis.org/bfo/1.1/snap#Continuant http://www.ifomis.org/bfo/1.1/snap#Continuant
http://edamontology.org/topic_0003 ( Topic ) http://www.onto-med.de/ontologies/gfo.owl#Perpetuant http://www.onto-med.de/ontologies/gfo.owl#Perpetuant
http://edamontology.org/topic_0003 ( Topic ) http://purl.org/biotop/biotop.owl#Quality http://purl.org/biotop/biotop.owl#Quality
http://edamontology.org/topic_3176 ( DNA packaging ) http://purl.bioontology.org/ontology/MSH/D042003 http://purl.bioontology.org/ontology/MSH/D042003
http://edamontology.org/topic_3176 ( DNA packaging ) https://en.wikipedia.org/wiki/Chromosome#DNA_packaging https://en.wikipedia.org/wiki/Chromosome#DNA_packaging
http://edamontology.org/topic_3577 ( Personalised medicine ) None None
http://edamontology.org/topic_3168 ( Sequencing ) https://en.wikipedia.org/wiki/Sequencing https://en.wikipedia.org/wiki/Sequencing
http://edamontology.org/topic_3168 ( Sequencing ) http://purl.bioontology.org/ontology/MSH/D059014 http://purl.bioontology.org/ontology/MSH/D059014
http://edamontology.org/topic_0112 ( Nucleic acid folding ) None None
http://edamontology.org/topic_0099 ( RNA ) https://en.wikipedia.org/wiki/RNA https://en.wikipedia.org/wiki/RNA
http://edamontology.org/topic_2229 ( Cell biology ) https://en.wikipedia.org/wiki/Cell_biology https://en.wikipedia.org/wiki/Cell_biology
http://edamontology.org/topic_3448 ( Neutron diffraction ) https://en.wikipedia.org/wiki/Neutron_diffraction https://en.wikipedia.org/wiki/Neutron_diffraction
http://edamontology.org/topic_3344 ( Biomedical science ) https://en.wikipedia.org/wiki/Biomedical_sciences https://en.wikipedia.org/wiki/Biomedical_sciences
http://edamontology.org/topic_0211 ( Flies ) None None
http://edamontology.org/topic_3072 ( Sequence feature detection ) http://purl.bioontology.org/ontology/MSH/D058977 http://purl.bioontology.org/ontology/MSH/D058977
http://edamontology.org/topic_0085 ( Functional genomics ) https://en.wikipedia.org/wiki/Functional_genomics https://en.wikipedia.org/wiki/Functional_genomics
http://edamontology.org/topic_3174 ( Metagenomics ) https://en.wikipedia.org/wiki/Metagenomics https://en.wikipedia.org/wiki/Metagenomics
http://edamontology.org/topic_3174 ( Metagenomics ) http://purl.bioontology.org/ontology/MSH/D056186 http://purl.bioontology.org/ontology/MSH/D056186
http://edamontology.org/topic_3796 ( Population genomics ) https://en.wikipedia.org/wiki/Population_genomics https://en.wikipedia.org/wiki/Population_genomics
http://edamontology.org/topic_0144 ( Protein residue interactions ) None None
http://edamontology.org/topic_3169 ( ChIP-seq ) https://en.wikipedia.org/wiki/ChIP-sequencing https://en.wikipedia.org/wiki/ChIP-sequencing
http://edamontology.org/topic_3320 ( RNA splicing ) https://en.wikipedia.org/wiki/RNA_splicing https://en.wikipedia.org/wiki/RNA_splicing
http://edamontology.org/topic_3401 ( Pain medicine ) None None
http://edamontology.org/topic_0215 ( Worms ) None None
http://edamontology.org/topic_3316 ( Computer science ) https://en.wikipedia.org/wiki/Computer_science https://en.wikipedia.org/wiki/Computer_science
http://edamontology.org/topic_3039 ( Nucleic acid structure ) None None
http://edamontology.org/is_topic_of ( is topic of ) http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in
http://edamontology.org/topic_3339 ( Microbial collection ) None None
http://edamontology.org/topic_0194 ( Phylogenomics ) https://en.wikipedia.org/wiki/Phylogenomics https://en.wikipedia.org/wiki/Phylogenomics
http://edamontology.org/topic_0122 ( Structural genomics ) https://en.wikipedia.org/wiki/Structural_genomics https://en.wikipedia.org/wiki/Structural_genomics
http://edamontology.org/topic_3415 ( Medical toxicology ) None None
http://edamontology.org/topic_0154 ( Small molecules ) https://en.wikipedia.org/wiki/Small_molecule https://en.wikipedia.org/wiki/Small_molecule
http://edamontology.org/topic_0154 ( Small molecules ) https://en.wikipedia.org/wiki/Metabolite https://en.wikipedia.org/wiki/Metabolite
http://edamontology.org/topic_1305 ( Restriction sites ) None None
http://edamontology.org/topic_2847 ( Disease (specific) ) None None
http://edamontology.org/topic_3127 ( DNA replication and recombination ) https://en.wikipedia.org/wiki/DNA_recombination https://en.wikipedia.org/wiki/DNA_recombination
http://edamontology.org/topic_3127 ( DNA replication and recombination ) https://en.wikipedia.org/wiki/DNA_replication https://en.wikipedia.org/wiki/DNA_replication
http://edamontology.org/topic_0736 ( Protein folds and structural domains ) None None
http://edamontology.org/topic_0107 ( Genetic codes and codon usage ) None None
http://edamontology.org/topic_3544 ( Protein signal peptides ) None None
http://edamontology.org/topic_2661 ( Toxins and targets ) None None
http://edamontology.org/topic_0804 ( Immunology ) https://en.wikipedia.org/wiki/Immunology https://en.wikipedia.org/wiki/Immunology
http://edamontology.org/topic_0804 ( Immunology ) http://purl.bioontology.org/ontology/MSH/D007125 http://purl.bioontology.org/ontology/MSH/D007125
http://edamontology.org/topic_0804 ( Immunology ) http://purl.bioontology.org/ontology/MSH/D007120 http://purl.bioontology.org/ontology/MSH/D007120
http://edamontology.org/topic_3052 ( Sequence clusters and classification ) None None
http://edamontology.org/topic_3473 ( Data mining ) https://en.wikipedia.org/wiki/Data_mining https://en.wikipedia.org/wiki/Data_mining
http://edamontology.org/topic_0655 ( Coding RNA ) None None
http://edamontology.org/topic_0218 ( Natural language processing ) https://en.wikipedia.org/wiki/Natural_language_processing https://en.wikipedia.org/wiki/Natural_language_processing
http://edamontology.org/topic_0218 ( Natural language processing ) https://en.wikipedia.org/wiki/Text_mining https://en.wikipedia.org/wiki/Text_mining
http://edamontology.org/topic_0218 ( Natural language processing ) https://en.wikipedia.org/wiki/Biomedical_text_mining https://en.wikipedia.org/wiki/Biomedical_text_mining
http://edamontology.org/topic_3535 ( Protein-nucleic acid binding sites ) None None
http://edamontology.org/topic_0091 ( Bioinformatics ) https://en.wikipedia.org/wiki/Bioinformatics https://en.wikipedia.org/wiki/Bioinformatics
http://edamontology.org/topic_0091 ( Bioinformatics ) http://purl.bioontology.org/ontology/MSH/D016247 http://purl.bioontology.org/ontology/MSH/D016247
http://edamontology.org/topic_0090 ( Information retrieval ) None None
http://edamontology.org/topic_3576 ( Medical biotechnology ) None None
http://edamontology.org/topic_0123 ( Protein properties ) None None
http://edamontology.org/topic_3171 ( DNA methylation ) None None
http://edamontology.org/topic_0747 ( Nucleic acid sites and features ) None None
http://edamontology.org/topic_0210 ( Fish ) None None
http://edamontology.org/topic_1307 ( Splice sites ) None None
http://edamontology.org/topic_3416 ( Musculoskeletal medicine ) None None
http://edamontology.org/topic_0173 ( Nucleic acid structure prediction ) None None
http://edamontology.org/topic_3543 ( Protein sequence repeats ) None None
http://edamontology.org/topic_0150 ( Protein design ) None None
http://edamontology.org/topic_3071 ( Biological databases ) http://purl.bioontology.org/ontology/MSH/D030541 http://purl.bioontology.org/ontology/MSH/D030541
http://edamontology.org/topic_3071 ( Biological databases ) https://en.wikipedia.org/wiki/Data_management https://en.wikipedia.org/wiki/Data_management
http://edamontology.org/topic_3053 ( Genetics ) https://en.wikipedia.org/wiki/Genetics https://en.wikipedia.org/wiki/Genetics
http://edamontology.org/topic_3053 ( Genetics ) http://purl.bioontology.org/ontology/MSH/D005823 http://purl.bioontology.org/ontology/MSH/D005823
http://edamontology.org/topic_3173 ( Epigenomics ) http://purl.bioontology.org/ontology/MSH/D057890 http://purl.bioontology.org/ontology/MSH/D057890
http://edamontology.org/topic_3173 ( Epigenomics ) https://en.wikipedia.org/wiki/Epigenomics https://en.wikipedia.org/wiki/Epigenomics
http://edamontology.org/topic_0092 ( Data visualisation ) https://en.wikipedia.org/wiki/Data_visualization https://en.wikipedia.org/wiki/Data_visualization
http://edamontology.org/topic_3042 ( Nucleic acid sequences ) None None
http://edamontology.org/topic_0783 ( Pathogens ) None None
http://edamontology.org/topic_3295 ( Epigenetics ) http://purl.bioontology.org/ontology/MSH/D019175 http://purl.bioontology.org/ontology/MSH/D019175
http://edamontology.org/topic_3295 ( Epigenetics ) https://en.wikipedia.org/wiki/Epigenetics https://en.wikipedia.org/wiki/Epigenetics
http://edamontology.org/topic_2842 ( High-throughput sequencing ) None None
http://edamontology.org/topic_3387 ( Marine biology ) https://en.wikipedia.org/wiki/Marine_biology https://en.wikipedia.org/wiki/Marine_biology
http://edamontology.org/topic_1304 ( CpG island and isochores ) None None
http://edamontology.org/topic_3676 ( Exome sequencing ) None None
http://edamontology.org/topic_2226 ( Structure determination ) None None
http://edamontology.org/topic_3512 ( Gene transcripts ) None None
http://edamontology.org/topic_3574 ( Human genetics ) https://en.wikipedia.org/wiki/Human_genetics https://en.wikipedia.org/wiki/Human_genetics
http://edamontology.org/topic_0147 ( Protein-protein interactions ) None None
http://edamontology.org/topic_3338 ( Mouse clinic ) None None
http://edamontology.org/topic_3361 ( Laboratory techniques ) None None
http://edamontology.org/topic_3954 ( Echography ) None None
http://edamontology.org/topic_0722 ( Nucleic acid classification ) None None
http://edamontology.org/topic_3500 ( Zoology ) https://en.wikipedia.org/wiki/Zoology https://en.wikipedia.org/wiki/Zoology
http://edamontology.org/topic_3050 ( Biodiversity ) http://purl.bioontology.org/ontology/MSH/D044822 http://purl.bioontology.org/ontology/MSH/D044822
http://edamontology.org/topic_3050 ( Biodiversity ) https://en.wikipedia.org/wiki/Biodiversity https://en.wikipedia.org/wiki/Biodiversity
http://edamontology.org/topic_3172 ( Metabolomics ) https://en.wikipedia.org/wiki/Metabolomics https://en.wikipedia.org/wiki/Metabolomics
http://edamontology.org/topic_3172 ( Metabolomics ) http://purl.bioontology.org/ontology/MSH/D055432 http://purl.bioontology.org/ontology/MSH/D055432
http://edamontology.org/topic_2840 ( Toxicology ) https://en.wikipedia.org/wiki/Toxicology https://en.wikipedia.org/wiki/Toxicology
http://edamontology.org/topic_3421 ( Surgery ) None None
http://edamontology.org/topic_2280 ( Nucleic acid structure comparison ) None None
http://edamontology.org/topic_3930 ( Immunogenetics ) https://en.wikipedia.org/wiki/Immunogenetics https://en.wikipedia.org/wiki/Immunogenetics
http://edamontology.org/topic_0200 ( Microarrays ) http://purl.bioontology.org/ontology/MSH/D046228 http://purl.bioontology.org/ontology/MSH/D046228
http://edamontology.org/topic_3314 ( Chemistry ) https://en.wikipedia.org/wiki/Chemistry https://en.wikipedia.org/wiki/Chemistry
http://edamontology.org/topic_2258 ( Cheminformatics ) https://en.wikipedia.org/wiki/Cheminformatics https://en.wikipedia.org/wiki/Cheminformatics
http://edamontology.org/topic_2839 ( Molecules ) None None
http://edamontology.org/topic_3837 ( Metagenomic sequencing ) None None
http://edamontology.org/topic_0137 ( Protein hydropathy ) None None
http://edamontology.org/topic_2811 ( Nomenclature ) None None
http://edamontology.org/topic_2830 ( Immunoproteins and antigens ) https://en.wikipedia.org/wiki/Antigen https://en.wikipedia.org/wiki/Antigen
http://edamontology.org/topic_2830 ( Immunoproteins and antigens ) https://en.wikipedia.org/wiki/Immunoproteins https://en.wikipedia.org/wiki/Immunoproteins
http://edamontology.org/topic_0617 ( Ribosomes ) None None
http://edamontology.org/topic_0642 ( Low complexity sequences ) None None
http://edamontology.org/topic_3322 ( Respiratory medicine ) None None
http://edamontology.org/topic_3519 ( PCR experiment ) https://en.wikipedia.org/wiki/Polymerase_chain_reaction https://en.wikipedia.org/wiki/Polymerase_chain_reaction
http://edamontology.org/topic_3542 ( Protein secondary structure ) https://en.wikipedia.org/wiki/Protein_secondary_structure https://en.wikipedia.org/wiki/Protein_secondary_structure
http://edamontology.org/topic_3536 ( Protein cleavage sites ) None None
http://edamontology.org/topic_2816 ( Gene resources ) None None
http://edamontology.org/topic_3044 ( Protein interaction networks ) None None
http://edamontology.org/topic_3073 ( Nucleic acid feature detection ) None None
http://edamontology.org/topic_3062 ( Genetic organisation ) None None
http://edamontology.org/topic_3376 ( Medicines research and development ) None None
http://edamontology.org/topic_0164 ( Sequence clustering ) None None
http://edamontology.org/topic_0698 ( Protein tertiary structure ) None None
http://edamontology.org/topic_0163 ( Sequence database search ) None None
http://edamontology.org/topic_3047 ( Molecular biology ) https://en.wikipedia.org/wiki/Molecular_biology https://en.wikipedia.org/wiki/Molecular_biology
http://edamontology.org/topic_0110 ( Transcription ) None None
http://edamontology.org/topic_0782 ( Fungi ) None None
http://edamontology.org/topic_0613 ( Peptides and amino acids ) None None
http://edamontology.org/topic_3391 ( Omics ) https://en.wikipedia.org/wiki/Omics https://en.wikipedia.org/wiki/Omics
http://edamontology.org/topic_3177 ( DNA-Seq ) None None
http://edamontology.org/topic_0157 ( Sequence composition, complexity and repeats ) None None
http://edamontology.org/topic_0219 ( Data submission, annotation and curation ) None None
http://edamontology.org/topic_0803 ( Human disease ) None None
http://edamontology.org/topic_3912 ( Genetic engineering ) https://en.wikipedia.org/wiki/Genetic_engineering https://en.wikipedia.org/wiki/Genetic_engineering
http://edamontology.org/topic_3070 ( Biology ) https://en.wikipedia.org/wiki/Biology https://en.wikipedia.org/wiki/Biology
http://edamontology.org/topic_0222 ( Genome annotation ) None None
http://edamontology.org/topic_3067 ( Anatomy ) https://en.wikipedia.org/wiki/Anatomy https://en.wikipedia.org/wiki/Anatomy
http://edamontology.org/topic_1311 ( Operon ) None None
http://edamontology.org/topic_3679 ( Animal study ) None None
http://edamontology.org/topic_0779 ( Mitochondria ) None None
http://edamontology.org/topic_3308 ( Transcriptomics ) https://en.wikipedia.org/wiki/Transcriptomics_technologies https://en.wikipedia.org/wiki/Transcriptomics_technologies
http://edamontology.org/topic_3335 ( Cardiology ) https://en.wikipedia.org/wiki/Cardiology https://en.wikipedia.org/wiki/Cardiology
http://edamontology.org/topic_3048 ( Mammals ) None None
http://edamontology.org/topic_0184 ( Threading ) None None
http://edamontology.org/topic_0141 ( Protein cleavage sites and proteolysis ) None None
http://edamontology.org/topic_2230 ( Classification ) None None
http://edamontology.org/topic_0749 ( Transcription factors and regulatory sites ) https://en.wikipedia.org/wiki/Transcriptional_regulation https://en.wikipedia.org/wiki/Transcriptional_regulation
http://edamontology.org/topic_0749 ( Transcription factors and regulatory sites ) https://en.wikipedia.org/wiki/Transcription_factor https://en.wikipedia.org/wiki/Transcription_factor
http://edamontology.org/topic_0109 ( Gene finding ) None None
http://edamontology.org/topic_0612 ( Cell cycle ) None None
http://edamontology.org/topic_3944 ( Cladistics ) https://en.wikipedia.org/wiki/Cladistics https://en.wikipedia.org/wiki/Cladistics
http://edamontology.org/topic_0179 ( Protein tertiary structure prediction ) None None
http://edamontology.org/topic_0694 ( Protein secondary structure ) None None
http://edamontology.org/topic_0601 ( Protein modifications ) https://en.wikipedia.org/wiki/Post-translational_modification https://en.wikipedia.org/wiki/Post-translational_modification
http://edamontology.org/topic_3397 ( Veterinary medicine ) https://en.wikipedia.org/wiki/Veterinary_medicine https://en.wikipedia.org/wiki/Veterinary_medicine
http://edamontology.org/topic_3673 ( Whole genome sequencing ) None None
http://edamontology.org/topic_3538 ( Protein disordered structure ) None None
http://edamontology.org/topic_3061 ( Documentation and help ) None None
http://edamontology.org/topic_3139 ( Sequence tagged sites ) None None
http://edamontology.org/topic_0629 ( Gene expression and microarray ) None None
http://edamontology.org/topic_3413 ( Infectious tropical disease ) None None
http://edamontology.org/topic_2819 ( Invertebrates ) None None
http://edamontology.org/topic_3405 ( Dentistry ) None None
http://edamontology.org/topic_2828 ( X-ray diffraction ) https://en.wikipedia.org/wiki/X-ray_diffraction https://en.wikipedia.org/wiki/X-ray_diffraction
http://edamontology.org/topic_0213 ( Mice or rats ) None None
http://edamontology.org/topic_3409 ( Gastroenterology ) None None
http://edamontology.org/topic_0203 ( Gene expression ) http://purl.bioontology.org/ontology/MSH/D015870 http://purl.bioontology.org/ontology/MSH/D015870
http://edamontology.org/topic_0203 ( Gene expression ) https://en.wikipedia.org/wiki/Gene_expression https://en.wikipedia.org/wiki/Gene_expression
http://edamontology.org/topic_3299 ( Evolutionary biology ) https://en.wikipedia.org/wiki/Evolutionary_biology https://en.wikipedia.org/wiki/Evolutionary_biology
http://edamontology.org/topic_3419 ( Psychiatry ) None None
http://edamontology.org/topic_0616 ( Organelles ) None None
http://edamontology.org/topic_3474 ( Machine learning ) https://en.wikipedia.org/wiki/Machine_learning https://en.wikipedia.org/wiki/Machine_learning
http://edamontology.org/topic_0654 ( DNA ) https://en.wikipedia.org/wiki/DNA https://en.wikipedia.org/wiki/DNA
http://edamontology.org/topic_3341 ( Clone library ) https://en.wikipedia.org/wiki/Library_(biology) https://en.wikipedia.org/wiki/Library_(biology)
http://edamontology.org/topic_0102 ( Mapping ) https://en.wikipedia.org/wiki/Gene_mapping https://en.wikipedia.org/wiki/Gene_mapping
http://edamontology.org/topic_0606 ( Literature data resources ) None None
http://edamontology.org/topic_0176 ( Molecular dynamics ) https://en.wikipedia.org/wiki/Molecular_dynamics https://en.wikipedia.org/wiki/Molecular_dynamics
http://edamontology.org/topic_0598 ( Sequence motif or profile ) None None
http://edamontology.org/topic_0195 ( Virtual PCR ) None None
http://edamontology.org/topic_0140 ( Protein targeting and localisation ) https://en.wikipedia.org/wiki/Protein_targeting https://en.wikipedia.org/wiki/Protein_targeting
http://edamontology.org/topic_3371 ( Synthetic chemistry ) None None
http://edamontology.org/topic_3178 ( RNA-Seq alignment ) None None
http://edamontology.org/topic_3332 ( Computational chemistry ) https://en.wikipedia.org/wiki/Computational_chemistry https://en.wikipedia.org/wiki/Computational_chemistry
http://edamontology.org/topic_3528 ( Disease pathways ) None None
http://edamontology.org/topic_2809 ( Study topic ) None None
http://edamontology.org/topic_0610 ( Ecology ) https://en.wikipedia.org/wiki/Ecology https://en.wikipedia.org/wiki/Ecology
http://edamontology.org/topic_0610 ( Ecology ) http://purl.bioontology.org/ontology/MSH/D004777 http://purl.bioontology.org/ontology/MSH/D004777
http://edamontology.org/topic_3517 ( GWAS study ) https://en.wikipedia.org/wiki/Genome-wide_association_study https://en.wikipedia.org/wiki/Genome-wide_association_study
http://edamontology.org/topic_3125 ( DNA binding sites ) https://en.wikipedia.org/wiki/DNA_binding_site https://en.wikipedia.org/wiki/DNA_binding_site
http://edamontology.org/topic_0204 ( Gene regulation ) https://en.wikipedia.org/wiki/Regulation_of_gene_expression https://en.wikipedia.org/wiki/Regulation_of_gene_expression
http://edamontology.org/topic_3398 ( Bioengineering ) https://en.wikipedia.org/wiki/Biological_engineering https://en.wikipedia.org/wiki/Biological_engineering
http://edamontology.org/topic_3957 ( Protein interaction experiment ) None None
http://edamontology.org/topic_3522 ( Northern blot experiment ) None None
http://edamontology.org/topic_2275 ( Molecular modelling ) https://en.wikipedia.org/wiki/Molecular_modelling https://en.wikipedia.org/wiki/Molecular_modelling
http://edamontology.org/topic_0004 ( Sequence analysis ) https://en.wikipedia.org/wiki/Sequence_analysis https://en.wikipedia.org/wiki/Sequence_analysis
http://edamontology.org/topic_0004 ( Sequence analysis ) http://purl.bioontology.org/ontology/MSH/D017421 http://purl.bioontology.org/ontology/MSH/D017421
http://edamontology.org/topic_3334 ( Neurology ) None None
http://edamontology.org/topic_0594 ( Sequence classification ) None None
http://edamontology.org/topic_0153 ( Lipids ) https://en.wikipedia.org/wiki/Lipid https://en.wikipedia.org/wiki/Lipid
http://edamontology.org/topic_2821 ( Unicellular eukaryotes ) None None
http://edamontology.org/topic_3412 ( Hepatic and biliary medicine ) None None
http://edamontology.org/topic_3523 ( RNAi experiment ) None None
http://edamontology.org/topic_2277 ( SNP ) None None
http://edamontology.org/topic_3170 ( RNA-Seq ) https://en.wikipedia.org/wiki/RNA-Seq https://en.wikipedia.org/wiki/RNA-Seq
http://edamontology.org/topic_3366 ( Data integration and warehousing ) https://en.wikipedia.org/wiki/Data_integration https://en.wikipedia.org/wiki/Data_integration
http://edamontology.org/topic_3366 ( Data integration and warehousing ) https://en.wikipedia.org/wiki/Data_warehouse https://en.wikipedia.org/wiki/Data_warehouse
http://edamontology.org/topic_3407 ( Endocrinology and metabolism ) None None
http://edamontology.org/topic_3941 ( Metatranscriptomics ) https://en.wikipedia.org/wiki/Metatranscriptomics https://en.wikipedia.org/wiki/Metatranscriptomics
http://edamontology.org/topic_0188 ( Sequence profiles and HMMs ) None None
http://edamontology.org/topic_3304 ( Neurobiology ) https://en.wikipedia.org/wiki/Neuroscience https://en.wikipedia.org/wiki/Neuroscience
http://edamontology.org/topic_1775 ( Function analysis ) None None
http://edamontology.org/topic_3175 ( DNA structural variation ) https://en.wikipedia.org/wiki/Structural_variation https://en.wikipedia.org/wiki/Structural_variation
http://edamontology.org/topic_3063 ( Medical informatics ) https://en.wikipedia.org/wiki/Health_informatics https://en.wikipedia.org/wiki/Health_informatics
http://edamontology.org/topic_3534 ( Protein binding sites ) None None
http://edamontology.org/topic_0167 ( Structural (3D) profiles ) None None
http://edamontology.org/topic_0620 ( Drugs and target structures ) None None
http://edamontology.org/topic_3395 ( Regenerative medicine ) https://en.wikipedia.org/wiki/Regenerative_medicine https://en.wikipedia.org/wiki/Regenerative_medicine
http://edamontology.org/topic_3520 ( Proteomics experiment ) None None
http://edamontology.org/topic_0160 ( Sequence sites, features and motifs ) None None
http://edamontology.org/topic_0202 ( Pharmacology ) https://en.wikipedia.org/wiki/Pharmacology https://en.wikipedia.org/wiki/Pharmacology
http://edamontology.org/topic_1312 ( Promoters ) None None
http://edamontology.org/topic_3297 ( Biotechnology ) https://en.wikipedia.org/wiki/Biotechnology https://en.wikipedia.org/wiki/Biotechnology
http://edamontology.org/topic_3410 ( Gender medicine ) None None
http://edamontology.org/topic_3394 ( Regulatory affairs ) https://en.wikipedia.org/wiki/Regulatory_affairs#Healthcare_RA https://en.wikipedia.org/wiki/Regulatory_affairs#Healthcare_RA
http://edamontology.org/topic_0625 ( Genotype and phenotype ) https://en.wikipedia.org/wiki/Genotype%E2%80%93phenotype_distinction https://en.wikipedia.org/wiki/Genotype%E2%80%93phenotype_distinction
http://edamontology.org/topic_3385 ( Light microscopy ) https://en.wikipedia.org/wiki/Microscopy#Optical_microscopy https://en.wikipedia.org/wiki/Microscopy#Optical_microscopy
http://edamontology.org/topic_3277 ( Sample collections ) None None
http://edamontology.org/topic_0156 ( Sequence editing ) None None
http://edamontology.org/topic_0634 ( Pathology ) None None
http://edamontology.org/topic_0158 ( Sequence motifs ) None None
http://edamontology.org/topic_3068 ( Literature and language ) http://purl.bioontology.org/ontology/MSH/D011642 http://purl.bioontology.org/ontology/MSH/D011642
http://edamontology.org/topic_0798 ( Mobile genetic elements ) https://en.wikipedia.org/wiki/Mobile_genetic_elements https://en.wikipedia.org/wiki/Mobile_genetic_elements
http://edamontology.org/topic_0183 ( Structure alignment ) None None
http://edamontology.org/topic_3525 ( Protein-nucleic acid interactions ) None None
http://edamontology.org/topic_3337 ( Biobank ) https://en.wikipedia.org/wiki/Biobank https://en.wikipedia.org/wiki/Biobank
http://edamontology.org/topic_2257 ( Phylogeny visualisation ) None None
http://edamontology.org/topic_2271 ( Structure database search ) None None
http://edamontology.org/topic_2818 ( Eukaryotes ) None None
http://edamontology.org/topic_3404 ( Dermatology ) None None
http://edamontology.org/topic_3420 ( Reproductive health ) None None
http://edamontology.org/topic_0637 ( Taxonomy ) https://en.wikipedia.org/wiki/Taxonomy_(biology) https://en.wikipedia.org/wiki/Taxonomy_(biology)
http://edamontology.org/topic_3179 ( ChIP-on-chip ) https://en.wikipedia.org/wiki/ChIP-on-chip https://en.wikipedia.org/wiki/ChIP-on-chip
http://edamontology.org/topic_3383 ( Bioimaging ) https://en.wikipedia.org/wiki/Biological_imaging https://en.wikipedia.org/wiki/Biological_imaging
http://edamontology.org/topic_0180 ( Protein fold recognition ) None None
http://edamontology.org/topic_0121 ( Proteomics ) https://en.wikipedia.org/wiki/Proteomics https://en.wikipedia.org/wiki/Proteomics
http://edamontology.org/topic_0121 ( Proteomics ) http://purl.bioontology.org/ontology/MSH/D040901 http://purl.bioontology.org/ontology/MSH/D040901
http://edamontology.org/topic_3533 ( Protein active sites ) None None
http://edamontology.org/topic_0149 ( Protein-nucleic acid interactions ) None None
http://edamontology.org/topic_3263 ( Data security ) https://en.wikipedia.org/wiki/Data_security https://en.wikipedia.org/wiki/Data_security
http://edamontology.org/topic_0172 ( Protein structure prediction ) None None
http://edamontology.org/topic_0143 ( Protein structure comparison ) None None
http://edamontology.org/topic_3514 ( Protein-ligand interactions ) None None
http://edamontology.org/topic_3573 ( Freshwater biology ) https://en.wikipedia.org/wiki/Freshwater_biology https://en.wikipedia.org/wiki/Freshwater_biology
http://edamontology.org/topic_3414 ( Trauma medicine ) None None
http://edamontology.org/topic_0821 ( Enzymes ) https://en.wikipedia.org/wiki/Enzyme https://en.wikipedia.org/wiki/Enzyme
http://edamontology.org/topic_1770 ( Structure comparison ) None None
http://edamontology.org/topic_2276 ( Protein function prediction ) None None
http://edamontology.org/topic_0769 ( Workflows ) https://en.wikipedia.org/wiki/Workflow https://en.wikipedia.org/wiki/Workflow
http://edamontology.org/topic_2813 ( Disease genes and proteins ) None None
http://edamontology.org/topic_3345 ( Data identity and mapping ) None None
http://edamontology.org/topic_3530 ( Genetic information processing pathways ) None None
http://edamontology.org/topic_3064 ( Developmental biology ) https://en.wikipedia.org/wiki/Developmental_biology https://en.wikipedia.org/wiki/Developmental_biology
http://edamontology.org/topic_3077 ( Data acquisition ) https://en.wikipedia.org/wiki/Data_acquisition https://en.wikipedia.org/wiki/Data_acquisition
http://edamontology.org/topic_3370 ( Analytical chemistry ) https://en.wikipedia.org/wiki/Analytical_chemistry https://en.wikipedia.org/wiki/Analytical_chemistry
http://edamontology.org/topic_3378 ( Pharmacovigilance ) https://en.wikipedia.org/wiki/Pharmacovigilance https://en.wikipedia.org/wiki/Pharmacovigilance
http://edamontology.org/topic_0191 ( Phylogeny reconstruction ) None None
http://edamontology.org/topic_0196 ( Sequence assembly ) https://en.wikipedia.org/wiki/Sequence_assembly https://en.wikipedia.org/wiki/Sequence_assembly
http://edamontology.org/topic_3403 ( Critical care medicine ) https://en.wikipedia.org/wiki/Intensive_care_medicine https://en.wikipedia.org/wiki/Intensive_care_medicine
http://edamontology.org/topic_1317 ( Structural biology ) https://en.wikipedia.org/wiki/Structural_biology https://en.wikipedia.org/wiki/Structural_biology
http://edamontology.org/topic_0741 ( Protein sequence alignment ) None None
http://edamontology.org/topic_0217 ( Literature analysis ) None None
http://edamontology.org/topic_0781 ( Virology ) https://en.wikipedia.org/wiki/Virology https://en.wikipedia.org/wiki/Virology
http://edamontology.org/topic_3375 ( Drug metabolism ) https://en.wikipedia.org/wiki/Drug_metabolism https://en.wikipedia.org/wiki/Drug_metabolism
http://edamontology.org/topic_3418 ( Paediatrics ) None None
http://edamontology.org/topic_3892 ( Biomolecular simulation ) None None
http://edamontology.org/topic_3945 ( Molecular evolution ) https://en.wikipedia.org/wiki/Molecular_evolution https://en.wikipedia.org/wiki/Molecular_evolution
http://edamontology.org/topic_3518 ( Microarray experiment ) https://en.wikipedia.org/wiki/Microarray https://en.wikipedia.org/wiki/Microarray
http://edamontology.org/topic_0751 ( Phosphorylation sites ) None None
http://edamontology.org/topic_0608 ( Cell and tissue culture ) None None
http://edamontology.org/topic_2817 ( Yeast ) None None
http://edamontology.org/topic_3321 ( Molecular genetics ) https://en.wikipedia.org/wiki/Molecular_genetics https://en.wikipedia.org/wiki/Molecular_genetics
http://edamontology.org/topic_3489 ( Database management ) https://en.wikipedia.org/wiki/Database https://en.wikipedia.org/wiki/Database
http://edamontology.org/topic_3340 ( Cell culture collection ) None None
http://edamontology.org/topic_0632 ( Probes and primers ) http://purl.bioontology.org/ontology/MSH/D015335 http://purl.bioontology.org/ontology/MSH/D015335
http://edamontology.org/topic_3810 ( Agricultural science ) https://en.wikipedia.org/wiki/Agricultural_science https://en.wikipedia.org/wiki/Agricultural_science
http://edamontology.org/topic_3041 ( Sequence databases ) None None
http://edamontology.org/topic_3075 ( Biological system modelling ) None None
http://edamontology.org/topic_0697 ( RNA structure ) None None
http://edamontology.org/topic_0635 ( Specific protein resources ) None None
http://edamontology.org/topic_0079 ( Metabolites ) None None
http://edamontology.org/topic_0753 ( Metabolic pathways ) None None
http://edamontology.org/topic_2885 ( DNA polymorphism ) https://en.wikipedia.org/wiki/Single-nucleotide_polymorphism https://en.wikipedia.org/wiki/Single-nucleotide_polymorphism
http://edamontology.org/topic_3527 ( Cellular process pathways ) None None
http://edamontology.org/topic_3948 ( Immunoinformatics ) https://en.wikipedia.org/wiki/Computational_immunology https://en.wikipedia.org/wiki/Computational_immunology
http://edamontology.org/topic_0159 ( Sequence comparison ) None None
http://edamontology.org/topic_2533 ( DNA mutation ) https://en.wikipedia.org/wiki/Mutation https://en.wikipedia.org/wiki/Mutation
http://edamontology.org/topic_0787 ( Rice ) None None
http://edamontology.org/topic_2278 ( Transmembrane protein prediction ) None None
http://edamontology.org/topic_3422 ( Urology and nephrology ) https://en.wikipedia.org/wiki/Nephrology https://en.wikipedia.org/wiki/Nephrology
http://edamontology.org/topic_3422 ( Urology and nephrology ) https://en.wikipedia.org/wiki/Urology https://en.wikipedia.org/wiki/Urology
http://edamontology.org/topic_3895 ( Synthetic biology ) https://en.wikipedia.org/wiki/Synthetic_biology https://en.wikipedia.org/wiki/Synthetic_biology
http://edamontology.org/topic_3511 ( Nucleic acid sites, features and motifs ) None None
http://edamontology.org/topic_0820 ( Membrane and lipoproteins ) https://en.wikipedia.org/wiki/Membrane_protein https://en.wikipedia.org/wiki/Membrane_protein
http://edamontology.org/topic_0820 ( Membrane and lipoproteins ) https://en.wikipedia.org/wiki/Lipoprotein https://en.wikipedia.org/wiki/Lipoprotein
http://edamontology.org/topic_3382 ( Imaging ) None None
http://edamontology.org/topic_2820 ( Vertebrates ) None None
http://edamontology.org/topic_3674 ( Methylated DNA immunoprecipitation ) https://en.wikipedia.org/wiki/Methylated_DNA_immunoprecipitation https://en.wikipedia.org/wiki/Methylated_DNA_immunoprecipitation
http://edamontology.org/topic_0133 ( Two-dimensional gel electrophoresis ) None None
http://edamontology.org/topic_2826 ( Protein structure alignment ) None None
http://edamontology.org/topic_0152 ( Carbohydrates ) https://en.wikipedia.org/wiki/Carbohydrate https://en.wikipedia.org/wiki/Carbohydrate
http://edamontology.org/topic_0770 ( Data types and objects ) None None
http://edamontology.org/topic_2868 ( Microsatellites ) None None
http://edamontology.org/topic_3537 ( Protein chemical modifications ) None None
http://edamontology.org/topic_3922 ( Proteogenomics ) https://en.wikipedia.org/wiki/Proteogenomics https://en.wikipedia.org/wiki/Proteogenomics
http://edamontology.org/topic_0796 ( Genetic mapping and linkage ) None None
http://edamontology.org/topic_0602 ( Molecular interactions, pathways and networks ) https://en.wikipedia.org/wiki/Metabolic_pathway https://en.wikipedia.org/wiki/Metabolic_pathway
http://edamontology.org/topic_0602 ( Molecular interactions, pathways and networks ) https://en.wikipedia.org/wiki/Interactome https://en.wikipedia.org/wiki/Interactome
http://edamontology.org/topic_3794 ( RNA immunoprecipitation ) https://en.wikipedia.org/wiki/Immunoprecipitation#RNA_immunoprecipitation_(RIP) https://en.wikipedia.org/wiki/Immunoprecipitation#RNA_immunoprecipitation_(RIP)
http://edamontology.org/topic_0151 ( G protein-coupled receptors (GPCR) ) None None
http://edamontology.org/topic_0797 ( Comparative genomics ) https://en.wikipedia.org/wiki/Comparative_genomics https://en.wikipedia.org/wiki/Comparative_genomics
http://edamontology.org/topic_3135 ( Signal or transit peptide ) None None
http://edamontology.org/topic_3396 ( Systems medicine ) None None
http://edamontology.org/topic_0094 ( Nucleic acid thermodynamics ) None None
http://edamontology.org/topic_3417 ( Opthalmology ) None None
http://edamontology.org/topic_0081 ( Structure analysis ) http://purl.bioontology.org/ontology/MSH/D015394 http://purl.bioontology.org/ontology/MSH/D015394
http://edamontology.org/topic_0081 ( Structure analysis ) https://en.wikipedia.org/wiki/Structural_bioinformatics https://en.wikipedia.org/wiki/Structural_bioinformatics
http://edamontology.org/topic_0148 ( Protein-ligand interactions ) None None
http://edamontology.org/topic_0177 ( Molecular docking ) None None
http://edamontology.org/topic_3126 ( Nucleic acid repeats ) None None
http://edamontology.org/topic_3374 ( Biotherapeutics ) None None
http://edamontology.org/topic_3120 ( Protein variants ) None None
http://edamontology.org/topic_3123 ( Expression signals ) None None
http://edamontology.org/topic_0178 ( Protein secondary structure prediction ) None None
http://edamontology.org/topic_3452 ( Tomography ) https://en.wikipedia.org/wiki/Tomography https://en.wikipedia.org/wiki/Tomography
http://edamontology.org/topic_3697 ( Microbial ecology ) https://en.wikipedia.org/wiki/Microbial_ecology https://en.wikipedia.org/wiki/Microbial_ecology
http://edamontology.org/topic_0220 ( Document, record and content management ) None None
http://edamontology.org/topic_0089 ( Ontology and terminology ) http://purl.bioontology.org/ontology/MSH/D002965 http://purl.bioontology.org/ontology/MSH/D002965
http://edamontology.org/topic_0089 ( Ontology and terminology ) https://en.wikipedia.org/wiki/Ontology_(information_science) https://en.wikipedia.org/wiki/Ontology_(information_science)
http://edamontology.org/topic_3940 ( Chromosome conformation capture ) https://en.wikipedia.org/wiki/Chromosome_conformation_capture https://en.wikipedia.org/wiki/Chromosome_conformation_capture
http://edamontology.org/topic_0175 ( Homology modelling ) None None
http://edamontology.org/topic_1308 ( Matrix/scaffold attachment sites ) None None
http://edamontology.org/topic_3325 ( Rare diseases ) None None
http://edamontology.org/topic_3038 ( Structure databases ) None None
http://edamontology.org/topic_3516 ( Genotyping experiment ) https://en.wikipedia.org/wiki/Genotyping https://en.wikipedia.org/wiki/Genotyping
http://edamontology.org/topic_2807 ( Tool topic ) None None
http://edamontology.org/topic_3065 ( Embryology ) https://en.wikipedia.org/wiki/Embryology https://en.wikipedia.org/wiki/Embryology
http://edamontology.org/topic_0114 ( Gene structure ) https://en.wikipedia.org/wiki/Gene_structure https://en.wikipedia.org/wiki/Gene_structure
http://edamontology.org/topic_3943 ( Paleogenomics ) https://en.wikipedia.org/wiki/Paleogenomics https://en.wikipedia.org/wiki/Paleogenomics
http://edamontology.org/topic_3293 ( Phylogenetics ) https://en.wikipedia.org/wiki/Phylogenetics https://en.wikipedia.org/wiki/Phylogenetics
http://edamontology.org/topic_3293 ( Phylogenetics ) http://purl.bioontology.org/ontology/MSH/D010802 http://purl.bioontology.org/ontology/MSH/D010802
http://edamontology.org/topic_0077 ( Nucleic acids ) https://en.wikipedia.org/wiki/Nucleic_acid https://en.wikipedia.org/wiki/Nucleic_acid
http://edamontology.org/topic_0077 ( Nucleic acids ) http://purl.bioontology.org/ontology/MSH/D017423 http://purl.bioontology.org/ontology/MSH/D017423
http://edamontology.org/topic_0077 ( Nucleic acids ) http://purl.bioontology.org/ontology/MSH/D017422 http://purl.bioontology.org/ontology/MSH/D017422
http://edamontology.org/topic_0097 ( Nucleic acid structure analysis ) https://en.wikipedia.org/wiki/Nucleic_acid_structure https://en.wikipedia.org/wiki/Nucleic_acid_structure
http://edamontology.org/topic_0740 ( Nucleic acid sequence alignment ) None None
http://edamontology.org/topic_3300 ( Physiology ) None None
http://edamontology.org/topic_2953 ( Nucleic acid design ) None None
http://edamontology.org/topic_3390 ( Nutritional science ) https://en.wikipedia.org/wiki/Nutrition https://en.wikipedia.org/wiki/Nutrition
http://edamontology.org/topic_0621 ( Model organisms ) https://en.wikipedia.org/wiki/Model_organism https://en.wikipedia.org/wiki/Model_organism
http://edamontology.org/topic_3408 ( Haematology ) None None
http://edamontology.org/topic_3529 ( Environmental information processing pathways ) None None
http://edamontology.org/topic_2869 ( RFLP ) None None
http://edamontology.org/topic_3379 ( Preclinical and clinical studies ) https://en.wikipedia.org/wiki/Clinical_trial https://en.wikipedia.org/wiki/Clinical_trial
http://edamontology.org/topic_3336 ( Drug discovery ) https://en.wikipedia.org/wiki/Drug_discovery https://en.wikipedia.org/wiki/Drug_discovery
http://edamontology.org/topic_0221 ( Sequence annotation ) None None
http://edamontology.org/topic_3373 ( Drug development ) https://en.wikipedia.org/wiki/Drug_development https://en.wikipedia.org/wiki/Drug_development
http://edamontology.org/topic_0083 ( Alignment ) None None
http://edamontology.org/topic_3510 ( Protein sites, features and motifs ) None None
http://edamontology.org/topic_0771 ( Theoretical biology ) None None
http://edamontology.org/topic_0082 ( Structure prediction ) https://en.wikipedia.org/wiki/Protein_structure_prediction https://en.wikipedia.org/wiki/Protein_structure_prediction
http://edamontology.org/topic_0082 ( Structure prediction ) https://en.wikipedia.org/wiki/Nucleic_acid_structure_prediction https://en.wikipedia.org/wiki/Nucleic_acid_structure_prediction
http://edamontology.org/topic_3402 ( Anaesthesiology ) https://en.wikipedia.org/wiki/Anesthesiology https://en.wikipedia.org/wiki/Anesthesiology
http://edamontology.org/topic_3060 ( Regulatory RNA ) None None
http://edamontology.org/topic_0618 ( Scents ) None None
http://edamontology.org/topic_2829 ( Ontologies, nomenclature and classification ) http://purl.bioontology.org/ontology/MSH/D002965 http://purl.bioontology.org/ontology/MSH/D002965
Write report and return approriate value.
No issues found.
An exception has occurred, use %tb to see the full traceback.
SystemExit: 0