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Extend tests for OpenBabelParser #18

Merged
merged 12 commits into from
Oct 8, 2024
Merged

Extend tests for OpenBabelParser #18

merged 12 commits into from
Oct 8, 2024

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lunamorrow
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This PR extends on #12 by adding new tests for different file/molecule types, in response to Issue #15

Currently, chainIDs are NOT supported -> please refer to Issue #17

I seem to have uncovered a bug with OpenBabel parsing of bonds defined in SDF files, but this requires more extensive testing to be sure. For now, the expected value of bonds for the SDF originating Universe has been set to 0 to pass tests, as the OBMol created from the SDF has 0 bonds recorded.

PR Checklist

  • Tests?
  • Docs?
  • CHANGELOG updated?
  • Issue raised/referenced?

@lunamorrow lunamorrow requested review from hmacdope, xhgchen, cbouy and exs-cbouy and removed request for hmacdope September 23, 2024 01:50
@lunamorrow
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Just realising I should have checked out a new branch for this PR... please disregard all of the old commits!

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@hmacdope hmacdope left a comment

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LGTM!

@xhgchen
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xhgchen commented Sep 30, 2024

LGTM!

@MDAnalysis MDAnalysis deleted a comment from pep8speaks Oct 1, 2024
@lunamorrow
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@pep8speaks

@lunamorrow lunamorrow merged commit cb7466e into main Oct 8, 2024
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5 participants