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added :: in the end of two sentences, to remove two "not defined" errors
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talagayev authored Mar 20, 2024
1 parent 0582265 commit 12f2581
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4 changes: 2 additions & 2 deletions package/MDAnalysis/analysis/align.py
Original file line number Diff line number Diff line change
Expand Up @@ -80,14 +80,14 @@
Note that in this example translations have not been removed. In order
to look at the pure rotation one needs to superimpose the centres of
mass (or geometry) first:
mass (or geometry) first::
>>> rmsd(mobile.select_atoms('name CA').positions, ref.select_atoms('name CA').positions, center=True)
21.892591663632704
This has only done a translational superposition. If you want to also do a
rotational superposition use the superposition keyword. This will calculate a
minimized RMSD between the reference and mobile structure.
minimized RMSD between the reference and mobile structure::
>>> rmsd(mobile.select_atoms('name CA').positions, ref.select_atoms('name CA').positions,
... superposition=True)
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