diff --git a/.github/workflows/gh-ci-cron.yaml b/.github/workflows/gh-ci-cron.yaml index 39984dc6f2..a2e21603e1 100644 --- a/.github/workflows/gh-ci-cron.yaml +++ b/.github/workflows/gh-ci-cron.yaml @@ -217,16 +217,21 @@ jobs: conda-latest-release: # A set of runner to check that the latest conda release works as expected if: "github.repository == 'MDAnalysis/mdanalysis'" - runs-on: ${{ matrix.os }} + runs-on: ${{ matrix.os }}-latest timeout-minutes: 60 strategy: fail-fast: false matrix: - os: [ubuntu-latest, macos-latest] + os: [ubuntu, macos] python-version: ["3.9", "3.10", "3.11"] steps: - uses: actions/checkout@v3 + - name: setup_os + uses: ./.github/actions/setup-os + with: + os-type: ${{ matrix.os }} + - name: setup_micromamba uses: mamba-org/setup-micromamba@v1 with: @@ -259,14 +264,24 @@ jobs: pypi-latest-release: # A set of runner to check that the latest conda release works as expected if: "github.repository == 'MDAnalysis/mdanalysis'" - runs-on: ${{ matrix.os }} + runs-on: ${{ matrix.os }}-latest timeout-minutes: 60 strategy: fail-fast: false matrix: - os: [ubuntu-latest, macos-latest, windows-latest] + os: [ubuntu, macos, windows] python-version: ["3.9", "3.10", "3.11"] + wheels: ['true', 'false'] steps: + # Checkout to have access to local actions (i.e. setup-os) + - uses: actions/checkout@v3 + + # We need this here in order to make sure we assign the correct compiler (i.e. clang for macos) + - name: setup_os + uses: ./.github/actions/setup-os + with: + os-type: ${{ matrix.os }} + - uses: actions/setup-python@v4 with: python-version: ${{ matrix.python-version }} @@ -274,7 +289,12 @@ jobs: - name: install_mdanalysis shell: bash run: | - pip install mdanalysis mdanalysistests pytest-xdist pytest-timeout "gsd<3.0" + # If wheels is False we build directly from source so we use the --no-binary flag + # to avoid pulling down wheels for MDAnalysis (which are already precompiled) + if [ "${{ matrix.wheels }}" == "false" ]; then + INSTALL_FLAGS="-vvv --no-binary" + fi + pip install ${INSTALL_FLAGS} mdanalysis mdanalysistests pytest-xdist pytest-timeout - name: run_tests shell: bash