0.0.13

[tsalo]

Release Notes

This is the last release before refactoring of large portions of the code.

Breaking Changes

• Corrected a bug where the component classification process should have calculated a threshold on a sorted list of component variances, but it was calculated on an unsorted list. (add pandas version check >= 1.5.2 and mod behavior #938)
• In v0.0.12 we changed the default method for selecting the number of components from MDL to AIC, but later realized this was only implemented when run through the python API, but not from the command line. Now AIC is the default for both. ([ENH, FIX] PCA variance enhancements and consistency improvements #877)

Additional changes to highlight

• Optimization curves and additional info for the PCA dimensionality reduction step are saved to help users and developers identify problems with the step that identifies the number of components to use (Print optimal number of maPCA components and plot optimization curves #839)
• Added Python 3.10 compatibility ([MAINT] Add 3.10 unit test, compatibilities in setup.cfg #818)
• Using BibTeX instead of duecredit for listing references so warnings from users not having duecredit installed will finally be gone ([REF] Replace duecredit with BibTeX #875)
• Tedana python package management now uses setup.cfg ([MAINT] Switch to setup.cfg-based configuration #874)

All changes since last stable release

• Generalize installation instructions to work with Windows in CONTRIBUTING by @aryangupta701 in [DOC] Generalize installation instructions to work with Windows in CONTRIBUTING #846
• [MAINT] Switch to setup.cfg-based configuration by @tsalo in [MAINT] Switch to setup.cfg-based configuration #874
• [FIX] Add function to prep data for JSON serialization by @jbteves in [FIX] Add function to prep data for JSON serialization #859
• [ENH, FIX] PCA variance enhancements and consistency improvements by @handwerkerd in [ENH, FIX] PCA variance enhancements and consistency improvements #877
• Print optimal number of maPCA components and plot optimization curves by @eurunuela in Print optimal number of maPCA components and plot optimization curves #839
• [DOC] Add information about using tedana with fMRIPrep v21.0.0 by @tsalo in [DOC] Add information about using tedana with fMRIPrep v21.0.0 #847
• [REF] Replace duecredit with BibTeX by @tsalo in [REF] Replace duecredit with BibTeX #875
• Update CONTRIBUTING.md by @jbteves in Update CONTRIBUTING.md #885
• [REF] Suppresses divide by 0 warning by @jbteves in [REF] Suppresses divide by 0 warning #786
• Add links to several multi-echo datasets by @tsalo in Add links to several multi-echo datasets #895
• Add F-T2 and F-S0 maps to verbose outputs by @tsalo in Add F-T2 and F-S0 maps to verbose outputs #893
• [MAINT] Add 3.10 unit test, compatibilities in setup.cfg by @jbteves in [MAINT] Add 3.10 unit test, compatibilities in setup.cfg #818
• [FIX] Use capital names in desc-ICAOrth_mixing.tsv columns by @pablosmig in [FIX] Use capital names in desc-ICAOrth_mixing.tsv columns #906
• [DOC] Add documentation page on denoising approaches by @tsalo in [DOC] Add documentation page on denoising approaches #823
• docs: add giadaan as a contributor for doc by @allcontributors in docs: add giadaan as a contributor for doc #916
• Add Nashiro dataset to documentation by @Kasambx in Add Nashiro dataset to documentation #912
• Fix example code in denoising documentation by @tsalo in Fix example code in denoising documentation #917
• Sorting varex for decision tree criterion I011 by @handwerkerd in Sorting varex for decision tree criterion I011 #924
• [DOC] Remove Josh as maintainer by @jbteves in [DOC] Remove Josh as maintainer #928
• add pandas version check >= 1.5.2 and mod behavior by @pmolfese in add pandas version check >= 1.5.2 and mod behavior #938

New Contributors

• @aryangupta701 made their first contribution in [DOC] Generalize installation instructions to work with Windows in CONTRIBUTING #846
• @pablosmig made their first contribution in [FIX] Use capital names in desc-ICAOrth_mixing.tsv columns #906
• @Kasambx made their first contribution in Add Nashiro dataset to documentation #912
• @pmolfese made their first contribution in add pandas version check >= 1.5.2 and mod behavior #938

Full Changelog: 0.0.12...0.0.13

---

This discussion was created from the release 0.0.13.