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fix dependencies conflict new base image #39
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silvandeleemput committed Feb 8, 2024
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2 changes: 1 addition & 1 deletion models/gc_nnunet_pancreas/dockerfiles/Dockerfile
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Expand Up @@ -27,7 +27,7 @@ RUN git clone https://github.com/DIAGNijmegen/CE-CT_PDAC_AutomaticDetection_nnUn
ENV SKLEARN_ALLOW_DEPRECATED_SKLEARN_PACKAGE_INSTALL=True

# Install nnUNet 1.7.0 and other requirements
RUN pip3 install --no-cache-dir -r /opt/algorithm/requirements.txt
RUN pip3 install --no-cache-dir evalutils==0.3.0 nnunet==1.7.0

# Extend the nnUNet installation with custom trainers
RUN SITE_PKG=`pip3 show nnunet | grep "Location:" | awk '{print $2}'` && \
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