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MHub - Add the NNUnet SegTHOR Task055 model #74

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merged 7 commits into from
Mar 5, 2024

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@LennyN95 LennyN95 commented Mar 5, 2024

Implementing the NNUnet SegTHOR model into MHub.

@LennyN95
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LennyN95 commented Mar 5, 2024

/test

sample:
  idc_version: "IDC Data Release Version 17.0 - December 04, 2023"
  data:
  - SeriesInstanceUID: 1.2.840.113654.2.55.257926562693607663865369179341285235858
    aws_url: s3://idc-open-data/7271ab1d-bb03-4ca9-9457-dabcafd4d33f/*
    path: dicom

reference:
  url: https://github.com/LennyN95/mhubai_models/releases/download/nnunet_segthor-v1.0.0/nnunet_segthor_output.zip

Test Results (24.03.05_11.38.12_gAWUUkFYhH)
id: cb0f2489-75e5-42e5-bfbc-4544d68dd935
date: '2024-03-05 11:46:41'
checked_files:
- file: nnunet_segthor.seg.dcm
  path: /app/test/src/1.2.840.113654.2.55.257926562693607663865369179341285235858/nnunet_segthor.seg.dcm
  checks:
  - checker: DicomsegContentCheck
    notes:
    - label: Segment Count
      description: The number of segments identified in the inspected dicomseg file.
      info: 4
summary:
  files_missing: 0
  files_extra: 0
  checks:
    DicomsegContentCheck:
      files: 1
conclusion: true

@LennyN95 LennyN95 merged commit 55d16ce into MHubAI:main Mar 5, 2024
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