-
Notifications
You must be signed in to change notification settings - Fork 118
524 lines (446 loc) · 13.2 KB
/
ci.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
name: MODFLOW 6 continuous integration
on:
push:
paths-ignore:
- '**.md'
- '**.pdf'
- '**.tex'
- '**.jpg'
- '**.jpeg'
- '**.png'
- '**.bbl'
- '**.bib'
- 'doc/**.dat'
- 'doc/**.ipynb'
- 'doc/**.py'
- 'doc/**.sh'
- 'doc/**.xlsx'
- '.hpc/**'
pull_request:
branches:
- master
- develop
paths-ignore:
- '**.md'
- '**.pdf'
- '**.tex'
- '**.jpg'
- '**.jpeg'
- '**.png'
- '**.bbl'
- '**.bib'
- 'doc/**.dat'
- 'doc/**.ipynb'
- 'doc/**.py'
- 'doc/**.sh'
- 'doc/**.xlsx'
- '.hpc/**'
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
env:
PIXI_BETA_WARNING_OFF: true
jobs:
lint:
name: Check format
runs-on: ubuntu-latest
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
- uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
- name: Check Fortran source formatting
run: pixi run check-format
- name: Check MSVS project files
run: pixi run check-vfproj
- name: Check CITATION.cff
uses: dieghernan/cff-validator@v3
build:
name: Build
runs-on: ubuntu-22.04
env:
FC: gfortran
FC_V: 13
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
- name: Setup ${{ env.FC }} ${{ env.FC_V }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: gcc
version: ${{ env.FC_V }}
- uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
- name: Meson setup
run: pixi run setup -Dwerror=true builddir
- name: Meson compile
run: pixi run build builddir
- name: Show build log
if: failure()
run: cat builddir/meson-logs/meson-log.txt
- name: Meson test
run: pixi run test builddir
smoke_test:
name: Smoke test
runs-on: ubuntu-22.04
defaults:
run:
shell: bash
env:
FC: gfortran
FC_V: 13
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
path: modflow6
- name: Checkout test-drive
uses: actions/checkout@v4
with:
repository: fortran-lang/test-drive
path: test-drive
- name: Setup ${{ env.FC }} ${{ env.FC_V }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: gcc
version: ${{ env.FC_V }}
- name: Setup pixi
uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
manifest-path: "modflow6/pixi.toml"
- name: Custom pixi install
working-directory: modflow6
run: pixi run install
- name: Build test-drive
working-directory: test-drive
run: |
pixi run --manifest-path=../modflow6/pixi.toml meson setup builddir --prefix=$(pwd) --libdir=lib
pixi run --manifest-path=../modflow6/pixi.toml meson install -C builddir
echo "PKG_CONFIG_PATH=$(pwd)/lib/pkgconfig:$PKG_CONFIG_PATH" >> $GITHUB_ENV
- name: Build modflow6
working-directory: modflow6
run: |
pixi run setup builddir
pixi run build builddir
- name: Show build log
if: failure()
working-directory: modflow6
run: cat builddir/meson-logs/meson-log.txt
- name: Unit test programs
working-directory: modflow6
run: pixi run test builddir
- name: Update flopy
working-directory: modflow6
run: pixi run update-flopy
- name: Get executables
working-directory: modflow6
env:
GITHUB_TOKEN: ${{ github.token }}
run: pixi run get-exes
- name: Test programs
working-directory: modflow6
run: |
if [ "${{ github.ref_name }}" == "master" ]; then
pixi run autotest -m "not slow and not regression and not developmode"
else
pixi run autotest --smoke
fi
- name: Upload failed test output
if: failure()
uses: actions/upload-artifact@v4
with:
name: failed-smoke-${{ runner.os }}-${{ env.FC }}-${{ env.FC_V }}
path: modflow6/autotest/.failed
test_gfortran:
name: Test gnu fortran
needs:
- lint
- build
- smoke_test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ ubuntu-22.04, macos-12, macos-14, windows-2022 ]
defaults:
run:
shell: bash
env:
FC: gfortran
FC_V: 13
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
path: modflow6
- name: Checkout modflow6-testmodels
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-testmodels
path: modflow6-testmodels
- name: Checkout modflow6-examples
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-examples
path: modflow6-examples
- name: Setup ${{ env.FC }} ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 12 || env.FC_V }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: gcc
version: ${{ contains(fromJSON('["macos-14"]'), matrix.os) && 12 || env.FC_V }}
- name: Setup pixi
uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
manifest-path: "modflow6/pixi.toml"
- name: Custom pixi install
working-directory: modflow6
run: pixi run install
- name: Set LDFLAGS (macOS)
if: matrix.os == 'macos-14'
run: |
os_ver=$(sw_vers -productVersion | cut -d'.' -f1)
if (( "$os_ver" > 12 )); then
ldflags="$LDFLAGS -Wl,-ld_classic"
echo "LDFLAGS=$ldflags" >> $GITHUB_ENV
fi
- name: Build modflow6
working-directory: modflow6
run: |
setupargs=""
if [[ "${{ matrix.os }}" == "macos-14" ]]; then
setupargs="-Doptimization=1"
fi
pixi run setup builddir $setupargs
pixi run build builddir
- name: Show build log
if: failure()
working-directory: modflow6
run: cat builddir/meson-logs/meson-log.txt
- name: Unit test programs
working-directory: modflow6
run: pixi run test builddir
- name: Update flopy
working-directory: modflow6
run: pixi run update-flopy
- name: Get executables
working-directory: modflow6/autotest
env:
GITHUB_TOKEN: ${{ github.token }}
run: pixi run get-exes
- name: Test modflow6
working-directory: modflow6
env:
REPOS_PATH: ${{ github.workspace }}
run: |
markers=""
if [[ "${{ github.ref_name }}" == "master" ]]; then
markers="not large and not developmode"
else
markers="not large"
fi
filters=""
if [[ "${{ matrix.os }}" == "macos-14" ]]; then
# comparison fails on macos-14 with optimization=1
filters="not test028_sfr_rewet"
fi
pixi run autotest -m "$markers" -k "$filters"
- name: Upload failed test output
if: failure()
uses: actions/upload-artifact@v4
with:
name: failed-${{ matrix.os }}-${{ env.FC }}-${{ env.FC_V }}
path: modflow6/autotest/.failed
- name: Checkout usgslatex
if: runner.os == 'Linux'
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/usgslatex
path: usgslatex
- name: Install TeX Live
if: runner.os == 'Linux'
run: |
sudo apt-get update
sudo apt install texlive-science \
texlive-latex-extra \
texlive-font-utils \
texlive-fonts-recommended \
texlive-fonts-extra
- name: Install USGS LaTeX style files and Univers font
if: runner.os == 'Linux'
working-directory: usgslatex/usgsLaTeX
run: sudo ./install.sh --all-users
- name: Test distribution scripts
working-directory: modflow6
env:
GITHUB_TOKEN: ${{ github.token }}
run: pixi run test-dist-scripts
test_intel_fortran:
name: Test intel fortran
needs:
- lint
- build
- smoke_test
runs-on: ${{ matrix.os }}
env:
FC: intel-classic
FC_V: "2021.7"
strategy:
fail-fast: false
matrix:
os: [ubuntu-22.04, macos-12, windows-2022]
defaults:
run:
shell: bash
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
path: modflow6
- name: Checkout modflow6-testmodels
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-testmodels
path: modflow6-testmodels
- name: Checkout modflow6-examples
uses: actions/checkout@v4
with:
repository: MODFLOW-USGS/modflow6-examples
path: modflow6-examples
- name: Setup pixi
uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
manifest-path: "modflow6/pixi.toml"
- name: Custom pixi install
working-directory: modflow6
run: pixi run install
- name: Setup ${{ env.FC }} ${{ env.FC_V }}
uses: fortran-lang/setup-fortran@v1
with:
compiler: ${{ env.FC }}
version: ${{ env.FC_V }}
- name: Update version files
working-directory: modflow6
run: pixi run update-version
- name: Build modflow6
working-directory: modflow6
run: |
pixi run setup builddir
pixi run build builddir
- name: Show build log
if: failure()
working-directory: modflow6
run: cat builddir/meson-logs/meson-log.txt
- name: Unit test programs
working-directory: modflow6
run: pixi run test builddir
- name: Update flopy
working-directory: modflow6
run: pixi run update-flopy
- name: Get executables
working-directory: modflow6
env:
GITHUB_TOKEN: ${{ github.token }}
run: pixi run get-exes
- name: Test programs
working-directory: modflow6
env:
REPOS_PATH: ${{ github.workspace }}
run: |
if [ "${{ github.ref_name }}" == "master" ]; then
pixi run autotest -m "not large and not developmode"
else
pixi run autotest -m "not large"
fi
- name: Upload failed test output
if: failure()
uses: actions/upload-artifact@v4
with:
name: failed-${{ matrix.os }}-${{ env.FC }}-${{ env.FC_V }}
path: modflow6/autotest/.failed
- name: Test scripts
working-directory: modflow6
env:
GITHUB_TOKEN: ${{ github.token }}
run: pixi run test-dist-scripts
parallel_test:
name: Parallel testing
needs:
- lint
- build
- smoke_test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ ubuntu-22.04, macos-12, windows-2022 ]
defaults:
run:
shell: bash
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
path: modflow6
- name: Setup pixi
uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
manifest-path: "modflow6/pixi.toml"
- name: Custom pixi install
working-directory: modflow6
run: pixi run install
- name: Test parallel MF6
if: runner.os != 'Windows'
uses: ./modflow6/.github/actions/test-par
- name: Test parallel MF6 (Windows)
if: runner.os == 'Windows'
uses: ./modflow6/.github/actions/test-par-win
- name: Upload failed test output
if: failure()
uses: actions/upload-artifact@v4
with:
name: failed-${{ matrix.os }}
path: modflow6/autotest/.failed
extended_test:
name: Extended executable testing
needs:
- lint
- build
- smoke_test
runs-on: ${{ matrix.os }}
strategy:
fail-fast: false
matrix:
os: [ ubuntu-22.04, macos-12 ]
defaults:
run:
shell: bash
steps:
- name: Checkout modflow6
uses: actions/checkout@v4
with:
path: modflow6
- name: Setup pixi
uses: prefix-dev/[email protected]
with:
pixi-version: v0.24.2
manifest-path: "modflow6/pixi.toml"
- name: Custom pixi install
working-directory: modflow6
run: pixi run install
- name: Install additional netcdf testing packages
working-directory: modflow6
run: pixi run pip install xugrid xarray netcdf4
- name: Test Extended MF6
uses: ./modflow6/.github/actions/test-extended
- name: Upload failed test output
if: failure()
uses: actions/upload-artifact@v4
with:
name: failed-${{ matrix.os }}
path: modflow6/autotest/.failed