From 02b605fd84cae0b36b27e822a91d4f4eb0e7b22a Mon Sep 17 00:00:00 2001
From: Sunny Titus <77051845+Manangka@users.noreply.github.com>
Date: Fri, 21 Jun 2024 19:29:59 +0200
Subject: [PATCH] docs: build the sphinx documentation on windows (#1891)

This commit enables building the sphinx documentation on windows.
The make.bat needed to do so was missing and is added in this commit.

To build the documentation from a fresh git clone you need to run these commands:

pixi install
pixi run update-flopy
pixi run get-exes
pixi run setup builddir
pixi run build builddir
pixi run benchmark
pixi run sphinx

Furthermore I added the rtd environment to the pixi.toml. When building sphinx you now don't have to manually pip install the requirements.rtd.txt. Instead the task will automatically use the rtd environment

Finally i updated the github pipeline files. The newly generated pixi.lock is using version 5 which needs a newer pixi version. I also removed the pixi run install as this is no longer required.
---
 .build_rtd_docs/make.bat               |    35 +
 .build_rtd_docs/requirements.rtd.txt   |    14 -
 .github/workflows/ci.yml               |    12 +-
 .github/workflows/compilers.yml        |     2 +-
 .github/workflows/docs.yml             |    10 +-
 .github/workflows/large.yml            |     2 +-
 .github/workflows/pixi_auto_update.yml |     2 +-
 .github/workflows/release.yml          |     2 +-
 .readthedocs.yml                       |     5 -
 pixi.lock                              | 16713 ++++++++++++++++++++---
 pixi.toml                              |    26 +-
 11 files changed, 14600 insertions(+), 2223 deletions(-)
 create mode 100644 .build_rtd_docs/make.bat
 delete mode 100644 .build_rtd_docs/requirements.rtd.txt

diff --git a/.build_rtd_docs/make.bat b/.build_rtd_docs/make.bat
new file mode 100644
index 00000000000..7893348a1b7
--- /dev/null
+++ b/.build_rtd_docs/make.bat
@@ -0,0 +1,35 @@
+@ECHO OFF
+
+pushd %~dp0
+
+REM Command file for Sphinx documentation
+
+if "%SPHINXBUILD%" == "" (
+	set SPHINXBUILD=sphinx-build
+)
+set SOURCEDIR=.
+set BUILDDIR=_build
+
+if "%1" == "" goto help
+
+%SPHINXBUILD% >NUL 2>NUL
+if errorlevel 9009 (
+	echo.
+	echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
+	echo.installed, then set the SPHINXBUILD environment variable to point
+	echo.to the full path of the 'sphinx-build' executable. Alternatively you
+	echo.may add the Sphinx directory to PATH.
+	echo.
+	echo.If you don't have Sphinx installed, grab it from
+	echo.http://sphinx-doc.org/
+	exit /b 1
+)
+
+%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
+goto end
+
+:help
+%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS%
+
+:end
+popd
diff --git a/.build_rtd_docs/requirements.rtd.txt b/.build_rtd_docs/requirements.rtd.txt
deleted file mode 100644
index 979de2f6768..00000000000
--- a/.build_rtd_docs/requirements.rtd.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-numpy
-bmipy
-sphinx>=4
-sphinx_markdown_tables
-nbsphinx
-nbsphinx_link
-ipython
-ipykernel
-rtds_action
-myst-parser
-sphinx_rtd_theme>=1
-pytest
-filelock
-modflow-devtools
\ No newline at end of file
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index f7a1d090835..bc301f79bd9 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -51,7 +51,7 @@ jobs:
 
       - uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
 
       - name: Check Fortran source formatting
         run: pixi run check-format
@@ -81,7 +81,7 @@ jobs:
 
       - uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
 
       - name: Meson setup
         run: pixi run setup -Dwerror=true builddir
@@ -126,7 +126,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
@@ -225,7 +225,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
@@ -364,7 +364,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
@@ -455,7 +455,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
diff --git a/.github/workflows/compilers.yml b/.github/workflows/compilers.yml
index 2743408a576..87e2f5683e7 100644
--- a/.github/workflows/compilers.yml
+++ b/.github/workflows/compilers.yml
@@ -140,7 +140,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index a6751a93995..7f0a837015e 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -28,7 +28,7 @@ jobs:
 
       - uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
 
       - name: Check spelling
         run: pixi run check-spelling
@@ -65,17 +65,13 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
         working-directory: modflow6
         run: pixi run install
   
-      - name: Install additional packages for Sphinx using pip
-        working-directory: modflow6/.build_rtd_docs
-        run: pixi run pip install -r requirements.rtd.txt
-
       - name: Print python package versions
         working-directory: modflow6
         run: pixi run pip list
@@ -230,7 +226,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
 
       - name: Custom pixi install
         run: pixi run install
diff --git a/.github/workflows/large.yml b/.github/workflows/large.yml
index c58205cd993..5b45a88481e 100644
--- a/.github/workflows/large.yml
+++ b/.github/workflows/large.yml
@@ -69,7 +69,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
diff --git a/.github/workflows/pixi_auto_update.yml b/.github/workflows/pixi_auto_update.yml
index 14b43ca76fa..fbcf83a00e0 100644
--- a/.github/workflows/pixi_auto_update.yml
+++ b/.github/workflows/pixi_auto_update.yml
@@ -14,7 +14,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           cache: false
 
       - name: Update pixi lock file
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index cdf97846eba..38ed678f955 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -110,7 +110,7 @@ jobs:
       - name: Setup pixi
         uses: prefix-dev/setup-pixi@v0.8.1
         with:
-          pixi-version: v0.19.1
+          pixi-version: v0.24.2
           manifest-path: "modflow6/pixi.toml"
 
       - name: Custom pixi install
diff --git a/.readthedocs.yml b/.readthedocs.yml
index 808702f8077..d256b3a2069 100644
--- a/.readthedocs.yml
+++ b/.readthedocs.yml
@@ -20,8 +20,3 @@ sphinx:
 
 # Optionally build your docs in additional formats such as PDF and ePub
 formats: all
-
-# Optionally set the version of Python and requirements required to build your docs
-python:
-  install:
-    - requirements: .build_rtd_docs/requirements.rtd.txt
diff --git a/pixi.lock b/pixi.lock
index f4b63f9ee38..6f86d5c5469 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -1,4 +1,4 @@
-version: 4
+version: 5
 environments:
   default:
     channels:
@@ -7,32 +7,26 @@ environments:
       linux-64:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/alsa-lib-1.2.11-hd590300_1.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/appdirs-1.4.4-pyh9f0ad1d_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/atk-1.0-2.38.0-h04ea711_2.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/attr-2.5.1-h166bdaf_1.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/attrs-23.2.0-pyh71513ae_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/black-24.4.2-py39hf3d152e_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/bmipy-2.0.1-pyhd8ed1ab_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-1.1.0-hd590300_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-bin-1.1.0-hd590300_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/brotli-python-1.1.0-py39h3d6467e_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.6.2-hbcca054_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-h3faef2a_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2024.2.2-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/cairo-1.18.0-hbb29018_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/certifi-2024.6.2-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/charset-normalizer-3.3.2-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/click-8.1.7-unix_pyh707e725_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/codespell-2.3.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/configargparse-1.7-pyhd8ed1ab_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.2.1-py39h7633fee_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/dbus-1.13.6-h5008d03_3.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/exceptiongroup-1.2.0-pyhd8ed1ab_2.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/execnet-2.1.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/expat-2.6.2-h59595ed_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/noarch/filelock-3.14.0-pyhd8ed1ab_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/noarch/filelock-3.15.3-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/flaky-3.8.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2
@@ -41,30 +35,22 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.14.2-h14ed4e7_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/fonttools-4.53.0-py39hd3abc70_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/fortran-language-server-1.12.0-pyhd8ed1ab_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/noarch/fprettify-0.3.7-pyhd8ed1ab_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/freetype-2.12.1-h267a509_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/gdk-pixbuf-2.42.12-hb9ae30d_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/geos-3.12.1-h59595ed_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/gettext-0.22.5-h59595ed_2.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/gettext-tools-0.22.5-h59595ed_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/giflib-5.2.2-hd590300_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/gitdb-4.0.11-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/gitpython-3.1.43-pyhd8ed1ab_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-2.80.2-hf974151_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/glib-tools-2.80.2-hb6ce0ca_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/graphite2-1.3.13-h59595ed_1003.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/graphviz-2.50.0-h78e8752_4.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/gst-plugins-base-1.24.4-h9ad1361_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/gstreamer-1.24.4-haf2f30d_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/gtk2-2.24.33-h280cfa0_4.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/gts-0.7.6-h977cf35_4.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/harfbuzz-8.5.0-hfac3d4d_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/icu-73.2-h59595ed_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/idna-3.7-pyhd8ed1ab_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/noarch/importlib-resources-6.4.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/importlib_resources-6.4.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/iniconfig-2.0.0-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jinja2-3.1.4-pyhd8ed1ab_0.conda
@@ -72,167 +58,117 @@ environments:
       - conda: https://conda.anaconda.org/conda-forge/noarch/jsonschema-specifications-2023.12.1-pyhd8ed1ab_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/jupyter_core-5.7.2-py39hf3d152e_0.conda
       - conda: https://conda.anaconda.org/conda-forge/noarch/jupytext-1.16.2-pyhd8ed1ab_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/keyutils-1.6.1-h166bdaf_0.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/kiwisolver-1.4.5-py39h7633fee_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/lame-3.100-h166bdaf_1003.tar.bz2
       - conda: https://conda.anaconda.org/conda-forge/linux-64/lcms2-2.16-hb7c19ff_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-hf3520f5_1.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-hf3520f5_7.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/lerc-4.0.0-h27087fc_0.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libasprintf-0.22.5-h661eb56_2.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libasprintf-devel-0.22.5-h661eb56_2.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libblas-3.9.0-22_linux64_openblas.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libbrotlicommon-1.1.0-hd590300_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libbrotlidec-1.1.0-hd590300_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libbrotlienc-1.1.0-hd590300_1.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libcap-2.69-h0f662aa_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libcblas-3.9.0-22_linux64_openblas.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libclang-cpp15-15.0.7-default_h127d8a8_5.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libclang13-18.1.6-default_h5d6823c_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libcups-2.3.3-h4637d8d_4.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.20-hd590300_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libevent-2.1.12-hf998b51_1.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.6.2-h59595ed_0.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libflac-1.4.3-h59595ed_0.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h77fa898_7.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcrypt-1.10.3-hd590300_0.conda
+      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h77fa898_11.conda
       - conda: https://conda.anaconda.org/conda-forge/linux-64/libgd-2.3.3-h119a65a_9.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-0.22.5-h59595ed_2.conda
-      - conda: https://conda.anaconda.org/conda-forge/linux-64/libgettextpo-devel-0.22.5-h59595ed_2.conda
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   - xorg-libxrender >=0.9.11,<0.10.0a0
   - zlib
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   name: cairo
   version: 1.18.0
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   - zlib
   license: LGPL-2.1-only or MPL-1.1
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   version: 3.3.2
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   license_family: MIT
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   timestamp: 1698833765762
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   timestamp: 1692311973840
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+  build: unix_pyh707e725_0
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+  url: https://conda.anaconda.org/conda-forge/noarch/click-8.1.7-win_pyh7428d3b_0.conda
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   name: click
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   license: BSD-3-Clause
   license_family: BSD
+  purls:
+  - pkg:pypi/click?source=conda-forge-mapping
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   timestamp: 1716536580880
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+  build: pyhd8ed1ab_0
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   version: 0.4.6
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   - python >=3.7
   license: BSD-3-Clause
   license_family: BSD
+  purls:
+  - pkg:pypi/colorama?source=conda-forge-mapping
   size: 25170
   timestamp: 1666700778190
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 - kind: conda
   name: configargparse
   version: '1.7'
@@ -1891,6 +4005,40 @@ packages:
   license_family: MIT
   size: 39491
   timestamp: 1690138171226
+- kind: conda
+  name: configargparse
+  version: '1.7'
+  build: pyhd8ed1ab_0
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+  url: https://conda.anaconda.org/conda-forge/noarch/configargparse-1.7-pyhd8ed1ab_0.conda
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+  build: py39h0ca7971_0
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+  url: https://conda.anaconda.org/conda-forge/osx-64/contourpy-1.2.1-py39h0ca7971_0.conda
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+  license_family: BSD
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   license: BSD-3-Clause
   license_family: BSD
-  size: 232611
-  timestamp: 1712430213507
+  purls:
+  - pkg:pypi/contourpy?source=conda-forge-mapping
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   license: BSD-3-Clause
   license_family: BSD
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-  url: https://conda.anaconda.org/conda-forge/linux-64/contourpy-1.2.1-py39h7633fee_0.conda
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+  - libzlib >=1.2.13,<2.0.0a0
+  license: MIT
+  license_family: MIT
+  size: 272010
+  timestamp: 1674828850194
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+  build: h14ed4e7_0
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+  url: https://conda.anaconda.org/conda-forge/linux-64/fontconfig-2.14.2-h14ed4e7_0.conda
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+  md5: 0f69b688f52ff6da70bccb7ff7001d1d
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+  - libgcc-ng >=12
+  - libuuid >=2.32.1,<3.0a0
+  - libzlib >=1.2.13,<2.0.0a0
   license: MIT
   license_family: MIT
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   size: 272010
   timestamp: 1674828850194
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   - freetype >=2.12.1,<3.0a0
-  - libzlib >=1.2.13,<1.3.0a0
+  - libzlib >=1.2.13,<2.0.0a0
+  license: MIT
+  license_family: MIT
+  size: 237068
+  timestamp: 1674829100063
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+  build: h5bb23bf_0
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+  url: https://conda.anaconda.org/conda-forge/osx-64/fontconfig-2.14.2-h5bb23bf_0.conda
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+  - libzlib >=1.2.13,<2.0.0a0
   license: MIT
   license_family: MIT
+  purls: []
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   - freetype >=2.12.1,<3.0a0
-  - libzlib >=1.2.13,<1.3.0a0
+  - libzlib >=1.2.13,<2.0.0a0
+  license: MIT
+  license_family: MIT
+  size: 237668
+  timestamp: 1674829263740
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+  url: https://conda.anaconda.org/conda-forge/osx-arm64/fontconfig-2.14.2-h82840c6_0.conda
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   license_family: MIT
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   - libgcc-ng >=12
   - libuuid >=2.32.1,<3.0a0
-  - libzlib >=1.2.13,<1.3.0a0
+  - libzlib >=1.2.13,<2.0.0a0
+  license: MIT
+  license_family: MIT
+  size: 280375
+  timestamp: 1674830224830
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+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/fontconfig-2.14.2-ha9a116f_0.conda
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   license_family: MIT
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+  - ucrt >=10.0.20348.0
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+  - vs2015_runtime >=14.29.30139
+  license: MIT
+  license_family: MIT
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+  timestamp: 1674829354122
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+  build: hbde0cde_0
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+  url: https://conda.anaconda.org/conda-forge/win-64/fontconfig-2.14.2-hbde0cde_0.conda
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+  md5: 08767992f1a4f1336a257af1241034bd
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   - ucrt >=10.0.20348.0
   - vc >=14.2,<15
   - vs2015_runtime >=14.29.30139
   license: MIT
   license_family: MIT
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   timestamp: 1674829354122
 - kind: conda
@@ -2301,6 +5011,40 @@ packages:
   license_family: BSD
   size: 3667
   timestamp: 1566974674465
+- kind: conda
+  name: fonts-conda-ecosystem
+  version: '1'
+  build: '0'
+  subdir: noarch
+  noarch: generic
+  url: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2
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+  md5: fee5683a3f04bd15cbd8318b096a27ab
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+  - fonts-conda-forge
+  license: BSD-3-Clause
+  license_family: BSD
+  purls: []
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+  timestamp: 1566974674465
+- kind: conda
+  name: fonts-conda-forge
+  version: '1'
+  build: '0'
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+  noarch: generic
+  url: https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2
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+  md5: f766549260d6815b0c52253f1fb1bb29
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+  - font-ttf-inconsolata
+  - font-ttf-source-code-pro
+  - font-ttf-ubuntu
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 4102
+  timestamp: 1566932280397
 - kind: conda
   name: fonts-conda-forge
   version: '1'
@@ -2317,6 +5061,7 @@ packages:
   - font-ttf-ubuntu
   license: BSD-3-Clause
   license_family: BSD
+  purls: []
   size: 4102
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-  md5: 9dae301603c88aef61dba733e8931cdd
+  build: py39ha55e580_0
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+  md5: 7c4625b8a1013dd22e924f1fa9fbc605
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+  license_family: MIT
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+  size: 1918984
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   license: MIT
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   timestamp: 1717209430435
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+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/fonttools-4.53.0-py39he257ee7_0.conda
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+  license_family: MIT
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+  - pkg:pypi/fonttools?source=conda-forge-mapping
+  size: 2291678
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+  url: https://conda.anaconda.org/conda-forge/osx-arm64/fonttools-4.53.0-py39hfea33bf_0.conda
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   timestamp: 1637570882364
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   version: 0.3.7
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   license: GPL-3.0-or-later
   license_family: GPL
+  purls:
+  - pkg:pypi/fprettify?source=conda-forge-mapping
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   size: 634972
   timestamp: 1694615932610
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+  url: https://conda.anaconda.org/conda-forge/osx-64/freetype-2.12.1-h60636b9_2.conda
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+- kind: conda
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+  build: h36c2ea0_0
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   timestamp: 1686545222091
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   license: MIT
   license_family: MIT
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   license_family: Apache
-  size: 281798
-  timestamp: 1657977462600
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   license: Apache-2.0
   license_family: Apache
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   timestamp: 1657977692274
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+  subdir: osx-arm64
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+  - liblapacke 3.9.0 22_osxarm64_openblas
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   license_family: MIT
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   license: Apache-2.0 WITH LLVM-exception
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+  - libstdcxx-ng >=12
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 - kind: conda
   name: libtiff
   version: 4.6.0
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   - zstd >=1.5.5,<1.6.0a0
   license: HPND
+  purls: []
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   timestamp: 1711218038581
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   - libgcc-ng >=12
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   license_family: BSD
-  size: 33601
-  timestamp: 1680112270483
+  size: 33601
+  timestamp: 1680112270483
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+  timestamp: 1680112270483
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+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/libuuid-2.38.1-hb4cce97_0.conda
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 - kind: conda
   name: libuuid
   version: 2.38.1
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   - libgcc-ng >=12
   license: BSD-3-Clause
   license_family: BSD
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   timestamp: 1680113474501
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-  md5: 309dec04b70a3cc0f1e84a4013683bc0
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   depends:
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   - libogg >=1.3.4,<1.4.0a0
-  - libstdcxx-ng >=9.3.0
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+  url: https://conda.anaconda.org/conda-forge/win-64/libwebp-1.4.0-h2466b09_0.conda
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   license: BSD-3-Clause
   license_family: BSD
-  size: 286280
-  timestamp: 1610609811627
+  size: 71106
+  timestamp: 1714600150795
 - kind: conda
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   version: 1.4.0
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   - vc14_runtime >=14.29.30139
   license: BSD-3-Clause
   license_family: BSD
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   timestamp: 1714600150795
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   license_family: BSD
   size: 91941
   timestamp: 1714599671055
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+  url: https://conda.anaconda.org/conda-forge/linux-64/libwebp-1.4.0-h2c329e2_0.conda
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+  - libtiff >=4.6.0,<4.7.0a0
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+  - libwebp-base >=1.4.0,<2.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  purls: []
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+  url: https://conda.anaconda.org/conda-forge/osx-arm64/libwebp-1.4.0-h54798ee_0.conda
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 - kind: conda
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   - libwebp-base >=1.4.0,<2.0a0
   license: BSD-3-Clause
   license_family: BSD
+  purls: []
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   timestamp: 1714599993749
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   license_family: BSD
   size: 101815
   timestamp: 1714602881855
+- kind: conda
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+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/libwebp-1.4.0-h8b4e01b_0.conda
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+  - libpng >=1.6.43,<1.7.0a0
+  - libtiff >=4.6.0,<4.7.0a0
+  - libwebp-base 1.4.0.*
+  - libwebp-base >=1.4.0,<2.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  purls: []
+  size: 101815
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+- kind: conda
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+  url: https://conda.anaconda.org/conda-forge/osx-64/libwebp-1.4.0-hc207709_0.conda
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+  - libwebp-base >=1.4.0,<2.0a0
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 - kind: conda
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   - libwebp-base >=1.4.0,<2.0a0
   license: BSD-3-Clause
   license_family: BSD
+  purls: []
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   size: 355099
   timestamp: 1713200298965
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+  url: https://conda.anaconda.org/conda-forge/osx-64/libwebp-base-1.4.0-h10d778d_0.conda
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+  timestamp: 1713200298965
+- kind: conda
+  name: libwebp-base
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+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/libwebp-base-1.4.0-h31becfc_0.conda
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 - kind: conda
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   - libwebp 1.4.0
   license: BSD-3-Clause
   license_family: BSD
+  purls: []
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   license_family: BSD
   size: 287750
   timestamp: 1713200194013
+- kind: conda
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+  url: https://conda.anaconda.org/conda-forge/osx-arm64/libwebp-base-1.4.0-h93a5062_0.conda
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+- kind: conda
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+  url: https://conda.anaconda.org/conda-forge/win-64/libwebp-base-1.4.0-hcfcfb64_0.conda
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 - kind: conda
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   - libwebp 1.4.0
   license: BSD-3-Clause
   license_family: BSD
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   timestamp: 1713199854503
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+  name: zlib
+  version: 1.3.1
+  build: h68df207_1
+  build_number: 1
   subdir: linux-aarch64
-  url: https://conda.anaconda.org/conda-forge/linux-aarch64/zlib-1.2.13-h68df207_6.conda
-  sha256: 67d2e05bb76308ad2e6d8bd27d54e5f8d866d7900826a13f22b66ecacce02fed
-  md5: 11012f81be8e7dae8495df7ec17c0cc5
+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/zlib-1.3.1-h68df207_1.conda
+  sha256: 7d4f12a602447c00f65f99fcf332f350cc49161a4f215466e9eb1bbe51852978
+  md5: 6031f9e32654fbdb9fdba406ab980517
   depends:
   - libgcc-ng >=12
-  - libzlib 1.2.13 h68df207_6
+  - libzlib 1.3.1 h68df207_1
   license: Zlib
   license_family: Other
-  size: 95937
-  timestamp: 1716874085408
+  size: 95770
+  timestamp: 1716874148566
 - kind: conda
   name: zlib
-  version: 1.2.13
-  build: h87427d6_6
-  build_number: 6
+  version: 1.3.1
+  build: h68df207_1
+  build_number: 1
+  subdir: linux-aarch64
+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/zlib-1.3.1-h68df207_1.conda
+  sha256: 7d4f12a602447c00f65f99fcf332f350cc49161a4f215466e9eb1bbe51852978
+  md5: 6031f9e32654fbdb9fdba406ab980517
+  depends:
+  - libgcc-ng >=12
+  - libzlib 1.3.1 h68df207_1
+  license: Zlib
+  license_family: Other
+  purls: []
+  size: 95770
+  timestamp: 1716874148566
+- kind: conda
+  name: zlib
+  version: 1.3.1
+  build: h87427d6_1
+  build_number: 1
   subdir: osx-64
-  url: https://conda.anaconda.org/conda-forge/osx-64/zlib-1.2.13-h87427d6_6.conda
-  sha256: 3091d48a579c08ba20885bc8856def925e9dee9d1a7d8713e3ce002eb29fcd19
-  md5: 700b922d6d22e7deb5fb2964d0c8cf6a
+  url: https://conda.anaconda.org/conda-forge/osx-64/zlib-1.3.1-h87427d6_1.conda
+  sha256: 41bd5fef28b2755d637e3a8ea5c84010628392fbcf80c7e3d7370aaced7ee4fe
+  md5: 3ac9ef8975965f9698dbedd2a4cc5894
   depends:
   - __osx >=10.13
-  - libzlib 1.2.13 h87427d6_6
+  - libzlib 1.3.1 h87427d6_1
   license: Zlib
   license_family: Other
-  size: 88732
-  timestamp: 1716874218187
+  size: 88782
+  timestamp: 1716874245467
 - kind: conda
   name: zlib
-  version: 1.2.13
-  build: hfb2fe0b_6
-  build_number: 6
+  version: 1.3.1
+  build: h87427d6_1
+  build_number: 1
+  subdir: osx-64
+  url: https://conda.anaconda.org/conda-forge/osx-64/zlib-1.3.1-h87427d6_1.conda
+  sha256: 41bd5fef28b2755d637e3a8ea5c84010628392fbcf80c7e3d7370aaced7ee4fe
+  md5: 3ac9ef8975965f9698dbedd2a4cc5894
+  depends:
+  - __osx >=10.13
+  - libzlib 1.3.1 h87427d6_1
+  license: Zlib
+  license_family: Other
+  purls: []
+  size: 88782
+  timestamp: 1716874245467
+- kind: conda
+  name: zlib
+  version: 1.3.1
+  build: hfb2fe0b_1
+  build_number: 1
+  subdir: osx-arm64
+  url: https://conda.anaconda.org/conda-forge/osx-arm64/zlib-1.3.1-hfb2fe0b_1.conda
+  sha256: 87360c2dc662916aac37cf01e53324b4f4f78db6f399220818076752b093ede5
+  md5: f27e021db7862b6ddbc1d3578f10d883
+  depends:
+  - __osx >=11.0
+  - libzlib 1.3.1 hfb2fe0b_1
+  license: Zlib
+  license_family: Other
+  size: 78260
+  timestamp: 1716874280334
+- kind: conda
+  name: zlib
+  version: 1.3.1
+  build: hfb2fe0b_1
+  build_number: 1
   subdir: osx-arm64
-  url: https://conda.anaconda.org/conda-forge/osx-arm64/zlib-1.2.13-hfb2fe0b_6.conda
-  sha256: c09c9cb6de86d87b9267a6331c74cc8fb05bae5ee7749070a5e8883c3eff5424
-  md5: 88cf27df3eff5813734b538461f4c8cf
+  url: https://conda.anaconda.org/conda-forge/osx-arm64/zlib-1.3.1-hfb2fe0b_1.conda
+  sha256: 87360c2dc662916aac37cf01e53324b4f4f78db6f399220818076752b093ede5
+  md5: f27e021db7862b6ddbc1d3578f10d883
   depends:
   - __osx >=11.0
-  - libzlib 1.2.13 hfb2fe0b_6
+  - libzlib 1.3.1 hfb2fe0b_1
   license: Zlib
   license_family: Other
-  size: 78193
-  timestamp: 1716874169064
+  purls: []
+  size: 78260
+  timestamp: 1716874280334
+- kind: conda
+  name: zstd
+  version: 1.5.6
+  build: h02f22dd_0
+  subdir: linux-aarch64
+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/zstd-1.5.6-h02f22dd_0.conda
+  sha256: 484f9d0722c77685ae379fbff3ccd662af9ead7e59eb39cd6d0c677cdf25ff6c
+  md5: be8d5f8cf21aed237b8b182ea86b3dd6
+  depends:
+  - libgcc-ng >=12
+  - libstdcxx-ng >=12
+  - libzlib >=1.2.13,<2.0.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 539937
+  timestamp: 1714723130243
 - kind: conda
   name: zstd
   version: 1.5.6
@@ -11676,6 +23949,7 @@ packages:
   - libzlib >=1.2.13,<2.0.0a0
   license: BSD-3-Clause
   license_family: BSD
+  purls: []
   size: 539937
   timestamp: 1714723130243
 - kind: conda
@@ -11695,6 +23969,39 @@ packages:
   license_family: BSD
   size: 349143
   timestamp: 1714723445995
+- kind: conda
+  name: zstd
+  version: 1.5.6
+  build: h0ea2cb4_0
+  subdir: win-64
+  url: https://conda.anaconda.org/conda-forge/win-64/zstd-1.5.6-h0ea2cb4_0.conda
+  sha256: 768e30dc513568491818fb068ee867c57c514b553915536da09e5d10b4ebf3c3
+  md5: 9a17230f95733c04dc40a2b1e5491d74
+  depends:
+  - libzlib >=1.2.13,<2.0.0a0
+  - ucrt >=10.0.20348.0
+  - vc >=14.2,<15
+  - vc14_runtime >=14.29.30139
+  license: BSD-3-Clause
+  license_family: BSD
+  purls: []
+  size: 349143
+  timestamp: 1714723445995
+- kind: conda
+  name: zstd
+  version: 1.5.6
+  build: h915ae27_0
+  subdir: osx-64
+  url: https://conda.anaconda.org/conda-forge/osx-64/zstd-1.5.6-h915ae27_0.conda
+  sha256: efa04a98cb149643fa54c4dad5a0179e36a5fbc88427ea0eec88ceed87fd0f96
+  md5: 4cb2cd56f039b129bb0e491c1164167e
+  depends:
+  - __osx >=10.9
+  - libzlib >=1.2.13,<2.0.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 498900
+  timestamp: 1714723303098
 - kind: conda
   name: zstd
   version: 1.5.6
@@ -11708,6 +24015,7 @@ packages:
   - libzlib >=1.2.13,<2.0.0a0
   license: BSD-3-Clause
   license_family: BSD
+  purls: []
   size: 498900
   timestamp: 1714723303098
 - kind: conda
@@ -11726,6 +24034,38 @@ packages:
   license_family: BSD
   size: 554846
   timestamp: 1714722996770
+- kind: conda
+  name: zstd
+  version: 1.5.6
+  build: ha6fb4c9_0
+  subdir: linux-64
+  url: https://conda.anaconda.org/conda-forge/linux-64/zstd-1.5.6-ha6fb4c9_0.conda
+  sha256: c558b9cc01d9c1444031bd1ce4b9cff86f9085765f17627a6cd85fc623c8a02b
+  md5: 4d056880988120e29d75bfff282e0f45
+  depends:
+  - libgcc-ng >=12
+  - libstdcxx-ng >=12
+  - libzlib >=1.2.13,<2.0.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  purls: []
+  size: 554846
+  timestamp: 1714722996770
+- kind: conda
+  name: zstd
+  version: 1.5.6
+  build: hb46c0d2_0
+  subdir: osx-arm64
+  url: https://conda.anaconda.org/conda-forge/osx-arm64/zstd-1.5.6-hb46c0d2_0.conda
+  sha256: 2d4fd1ff7ee79cd954ca8e81abf11d9d49954dd1fef80f27289e2402ae9c2e09
+  md5: d96942c06c3e84bfcc5efb038724a7fd
+  depends:
+  - __osx >=11.0
+  - libzlib >=1.2.13,<2.0.0a0
+  license: BSD-3-Clause
+  license_family: BSD
+  size: 405089
+  timestamp: 1714723101397
 - kind: conda
   name: zstd
   version: 1.5.6
@@ -11739,5 +24079,6 @@ packages:
   - libzlib >=1.2.13,<2.0.0a0
   license: BSD-3-Clause
   license_family: BSD
+  purls: []
   size: 405089
   timestamp: 1714723101397
diff --git a/pixi.toml b/pixi.toml
index 7301542e053..6330c95eafd 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -17,7 +17,7 @@ matplotlib = "*"
 meson = "1.3.0"
 networkx = "*"
 ninja = "*"
-numpy = "*"
+numpy = "<2.0.0"    # modflowapi has a resriction on the numpy version
 pandas = "*"
 pip = "*"
 pydotplus = "*"
@@ -34,6 +34,28 @@ shapely = "*"
 syrupy = "*"
 xmipy = "*"
 
+[feature.rtd.dependencies]
+numpy = "*"
+bmipy = "*"
+sphinx = ">=4"
+ipython = "*"
+ipykernel = "*"
+myst-parser = "*"
+sphinx_rtd_theme = ">=1"
+pytest = "*"
+filelock = "*"
+modflow-devtools = "*"
+
+[feature.rtd.pypi-dependencies]
+# These dependencies are added as pypi dependencies because an osx-arm64 version of them doesn't exist on conda
+sphinx_markdown_tables = "*"
+nbsphinx = "*"
+nbsphinx_link = "*"
+rtds_action = "*"
+
+[environments]
+rtd = { features = ["rtd"], solve-group = "default" }
+
 [tasks]
 # install
 install-flopy = "pip install --no-build-isolation --no-deps --disable-pip-version-check git+https://github.com/modflowpy/flopy.git"
@@ -76,6 +98,8 @@ build-dist = { cmd = "python build_dist.py", cwd = "distribution" }
 test-dist-scripts = { cmd = "pytest -v --durations 0", cwd = "distribution" }
 update-version = { cmd = "python update_version.py", cwd = "distribution" }
 deprecations = { cmd = "python deprecations.py", cwd = "doc/mf6io/mf6ivar" }
+
+[feature.rtd.tasks]
 sphinx = { cmd = "make html", cwd = ".build_rtd_docs" }
 
 # os-specific tasks