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66 Open 79 Closed
66 Open 79 Closed
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Issues list

Does MSGF+ support Bruker TDF files? question
#155 opened Jul 13, 2024 by hxxhust163
2
What is peptide isoform and how will it affect the MSGF+ search results? question
#154 opened Apr 12, 2024 by yonghanyu
How to validate the MSGF+ peptide searching data? question
#153 opened Apr 2, 2024 by MarcoPineapollo
Question about my parameter file question
#151 opened Feb 1, 2024 by JannikSchneider12
5
Using trypsin vs no enzyme changes score on same PSM? question
#148 opened Oct 20, 2023 by glormph
4
Question about interpreting a low Qvalue but high(er) Evalue question
#147 opened Aug 11, 2023 by Hassan-1991
Supported OpenJDK version question
#145 opened Jan 16, 2023 by bernt-matthias
2
no valid spectra
#144 opened Jan 6, 2023 by simonklaes
8
data format matters?
#142 opened Nov 25, 2022 by hxxhust163
4
library error question
#141 opened Jul 17, 2022 by XuanangD
Java.lang.NegativeArraySizeException
#140 opened Jul 1, 2022 by Luxxii
2
I occured a question when i try to convert .mzid to tsv question
#139 opened Jun 29, 2022 by fengwei-li
Unexpected low sensitivity for asp-n digested samples question
#137 opened May 9, 2022 by JB91451
4
Use already existing database help files question
#134 opened Feb 28, 2022 by Stortebecker
1
About Modification question
#133 opened Feb 15, 2022 by lbwfff
4
Got some negative values of MSGFScore in the output file when using ".mgf" file question
#132 opened Nov 25, 2021 by Sweetsour-crap
A question about the FDR and Q-Value of the MS-GF+ output question
#131 opened Sep 28, 2021 by Sweetsour-crap
2
First time user, MANY Dynmods: MS-GF+ crashes question
#123 opened May 31, 2021 by r-cheologist
5
MSGF+ results without ion intensity of TMT 11 plex data question
#122 opened May 27, 2021 by sunqiangzai
6
java.lang.IndexOutOfBoundsException when opening mzML file question
#121 opened Apr 21, 2021 by BBBBunnyZ
1
How can I use several spectrum files? question
#119 opened Mar 9, 2021 by Wang-kaifei
3
java.lang.NumberFormatException: For input string: "1-" over some data datasets bug question
#115 opened Jan 7, 2021 by mstambou
@alchemistmatt
24
questions about Q-values in MSGF+ question
#114 opened Dec 24, 2020 by Linkous-02
4
How to exract spectral counts from pepXML question
#109 opened Sep 5, 2020 by Jokendo-collab
How to reduce MS-GF+ search time question
#108 opened Sep 3, 2020 by Jokendo-collab
7
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