Bump version: 1.2.1 → 1.3.0

MannLabs · Sep 12, 2024 · e87f2dc · e87f2dc
1 parent f29adc4
commit e87f2dc
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Showing 16 changed files with 26 additions and 27 deletions.
diff --git a/.bumpversion.cfg b/.bumpversion.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 1.2.1
+current_version = 1.3.0
 commit = True
 tag = False
 parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<build>\d+))?
@@ -23,23 +23,22 @@ serialize =
 
 [bumpversion:file:./release/linux/build_package_linux.sh]
 
-[bumpversion:file:./release/linux/create_installer_linux.sh]  # TODO remove with old release workflow
+[bumpversion:file:./release/linux/create_installer_linux.sh]
 
 [bumpversion:file:./release/macos/distribution.xml]
 
 [bumpversion:file:./release/macos/Info.plist]
 
-[bumpversion:file:./release/macos/create_installer_macos.sh]  # TODO remove with old release workflow
+[bumpversion:file:./release/macos/create_installer_macos.sh]
 
 [bumpversion:file:./release/macos/build_installer_macos.sh]
 
 [bumpversion:file:./release/macos/build_package_macos.sh]
 
-[bumpversion:file:./release/windows/create_installer_windows.sh]  # TODO remove with old release workflow
+[bumpversion:file:./release/windows/create_installer_windows.sh]
 
 [bumpversion:file:./release/windows/build_installer_windows.ps1]
 
 [bumpversion:file:./release/windows/peptdeep_innoinstaller.iss]
-
 search = {current_version}
 replace = {new_version}
diff --git a/README.md b/README.md
@@ -112,10 +112,10 @@ The GUI of peptdeep is a completely stand-alone tool that requires no
 knowledge of Python or CLI tools. Click on one of the links below to
 download the latest release for:
 
-- [**Windows**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.2.1-windows-amd64.exe)
-- [**macOS**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.2.1-macos-darwin-x64.pkg)
-- [**macOS ARM**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.2.1-macos-darwin-arm64.pkg )
-- [**Linux**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.2.1-linux-x64.deb)
+- [**Windows**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.3.0-windows-amd64.exe)
+- [**macOS**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.3.0-macos-darwin-x64.pkg)
+- [**macOS ARM**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.3.0-macos-darwin-arm64.pkg )
+- [**Linux**](https://github.com/MannLabs/alphapeptdeep/releases/latest/download/peptdeep-1.3.0-linux-x64.deb)
 
 Older releases remain available on the [release
 page](https://github.com/MannLabs/alphapeptdeep/releases), but no

diff --git a/docs/conf.py b/docs/conf.py
@@ -24,7 +24,7 @@
 copyright = "2022, Mann Labs, MPIB"
 author = "Mann Labs, MPIB"
 
-release = "1.2.1"
+release = "1.3.0"
 
 # -- General configuration ---------------------------------------------------
 

diff --git a/peptdeep/__init__.py b/peptdeep/__init__.py
@@ -11,7 +11,7 @@
 #     pass
 
 __project__ = "peptdeep"
-__version__ = "1.2.1"
+__version__ = "1.3.0"
 __license__ = "Apache 2.0"
 __description__ = "The AlphaX deep learning framework for Proteomics"
 __author__ = "Mann Labs"

diff --git a/release/linux/build_installer_linux.sh b/release/linux/build_installer_linux.sh
@@ -14,7 +14,7 @@ python setup.py sdist bdist_wheel
 
 # Setting up the local package
 # Make sure you include the required extra packages and always use the stable or very-stable options!
-pip install "dist/peptdeep-1.2.1-py3-none-any.whl[stable]"
+pip install "dist/peptdeep-1.3.0-py3-none-any.whl[stable]"
 
 if [ "${CPU_OR_GPU}" != "GPU" ]; then
     pip install torch -U --extra-index-url https://download.pytorch.org/whl/cpu

diff --git a/release/linux/build_package_linux.sh b/release/linux/build_package_linux.sh
@@ -6,7 +6,7 @@ set -e -u
 
 PACKAGE_NAME=peptdeep
 
-# BUILD_NAME is taken from environment variables, e.g. 'peptdeep-1.2.1-linux-x64'
+# BUILD_NAME is taken from environment variables, e.g. 'peptdeep-1.3.0-linux-x64'
 rm -rf ${BUILD_NAME}.deb
 
 # If needed, include additional source such as e.g.:

diff --git a/release/linux/control b/release/linux/control
@@ -1,5 +1,5 @@
 Package: peptdeep
-Version: 1.2.1
+Version: 1.3.0
 Architecture: all
 Maintainer: Mann Labs <[email protected]>
 Description: peptdeep

diff --git a/release/linux/create_installer_linux.sh b/release/linux/create_installer_linux.sh
@@ -17,7 +17,7 @@ python setup.py sdist bdist_wheel
 # Setting up the local package
 cd release/linux
 # Make sure you include the required extra packages and always use the stable or very-stable options!
-pip install "../../dist/peptdeep-1.2.1-py3-none-any.whl[stable]"
+pip install "../../dist/peptdeep-1.3.0-py3-none-any.whl[stable]"
 
 if [ "$1" == "CPU" ]; then
     pip install torch -U --extra-index-url https://download.pytorch.org/whl/cpu

diff --git a/release/macos/Info.plist b/release/macos/Info.plist
@@ -9,9 +9,9 @@
 	<key>CFBundleIconFile</key>
 	<string>alpha_logo.icns</string>
 	<key>CFBundleIdentifier</key>
-	<string>peptdeep.1.2.1</string>
+	<string>peptdeep.1.3.0</string>
 	<key>CFBundleShortVersionString</key>
-	<string>1.2.1</string>
+	<string>1.3.0</string>
 	<key>CFBundleInfoDictionaryVersion</key>
 	<string>6.0</string>
 	<key>CFBundleName</key>

diff --git a/release/macos/build_installer_macos.sh b/release/macos/build_installer_macos.sh
@@ -9,7 +9,7 @@ rm -rf build
 
 # Creating the wheel
 python setup.py sdist bdist_wheel
-pip install "dist/peptdeep-1.2.1-py3-none-any.whl[stable]"
+pip install "dist/peptdeep-1.3.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pyinstaller release/pyinstaller/peptdeep.spec --distpath dist_pyinstaller --workpath build_pyinstaller -y
diff --git a/release/macos/build_package_macos.sh b/release/macos/build_package_macos.sh
@@ -5,7 +5,7 @@ set -e -u
 # This script must be run from the root of the repository after running build_installer_macos.sh
 
 PACKAGE_NAME=peptdeep
-# BUILD_NAME is taken from environment variables, e.g. peptdeep-1.2.1-macos-darwin-arm64 or peptdeep-1.2.1-macos-darwin-x64
+# BUILD_NAME is taken from environment variables, e.g. peptdeep-1.3.0-macos-darwin-arm64 or peptdeep-1.3.0-macos-darwin-x64
 rm -rf ${BUILD_NAME}.pkg
 
 # If needed, include additional source such as e.g.:
@@ -30,5 +30,5 @@ cd -
 
 chmod 777 release/macos/scripts/*
 
-pkgbuild --root dist_pyinstaller/${PACKAGE_NAME} --identifier de.mpg.biochem.${PACKAGE_NAME}.app --version 1.2.1 --install-location /Applications/${PACKAGE_NAME}.app --scripts release/macos/scripts ${PACKAGE_NAME}.pkg
+pkgbuild --root dist_pyinstaller/${PACKAGE_NAME} --identifier de.mpg.biochem.${PACKAGE_NAME}.app --version 1.3.0 --install-location /Applications/${PACKAGE_NAME}.app --scripts release/macos/scripts ${PACKAGE_NAME}.pkg
 productbuild --distribution release/macos/distribution.xml --resources release/macos/Resources --package-path ${PACKAGE_NAME}.pkg ${BUILD_NAME}.pkg
diff --git a/release/macos/create_installer_macos.sh b/release/macos/create_installer_macos.sh
@@ -21,7 +21,7 @@ python setup.py sdist bdist_wheel
 
 # Setting up the local package
 cd release/macos
-pip install "../../dist/peptdeep-1.2.1-py3-none-any.whl[stable]"
+pip install "../../dist/peptdeep-1.3.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install pyinstaller
@@ -41,5 +41,5 @@ cp ../../LICENSE.txt Resources/LICENSE.txt
 cp ../logos/alpha_logo.png Resources/alpha_logo.png
 chmod 777 scripts/*
 
-pkgbuild --root dist/peptdeep --identifier de.mpg.biochem.peptdeep.app --version 1.2.1 --install-location /Applications/peptdeep.app --scripts scripts peptdeep.pkg
+pkgbuild --root dist/peptdeep --identifier de.mpg.biochem.peptdeep.app --version 1.3.0 --install-location /Applications/peptdeep.app --scripts scripts peptdeep.pkg
 productbuild --distribution distribution.xml --resources Resources --package-path peptdeep.pkg dist/peptdeep_gui_installer_macos.pkg
diff --git a/release/macos/distribution.xml b/release/macos/distribution.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="utf-8" standalone="no"?>
 <installer-script minSpecVersion="1.000000">
-    <title>peptdeep 1.2.1</title>
+    <title>peptdeep 1.3.0</title>
     <background mime-type="image/png" file="alpha_logo.png" scaling="proportional"/>
     <welcome file="welcome.html" mime-type="text/html" />
     <conclusion file="conclusion.html" mime-type="text/html" />

diff --git a/release/windows/build_installer_windows.ps1 b/release/windows/build_installer_windows.ps1
@@ -10,7 +10,7 @@ Remove-Item -Recurse -Force -ErrorAction SilentlyContinue ./dist_pyinstaller
 # Creating the wheel
 python setup.py sdist bdist_wheel
 # Make sure you include the required extra packages and always use the stable or very-stable options!
-pip install "dist/peptdeep-1.2.1-py3-none-any.whl[stable]"
+pip install "dist/peptdeep-1.3.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pyinstaller release/pyinstaller/peptdeep.spec  --distpath dist_pyinstaller --workpath build_pyinstaller -y
diff --git a/release/windows/create_installer_windows.sh b/release/windows/create_installer_windows.sh
@@ -18,7 +18,7 @@ python setup.py sdist bdist_wheel
 # Setting up the local package
 cd release/windows
 # Make sure you include the required extra packages and always use the stable or very-stable options!
-pip install "../../dist/peptdeep-1.2.1-py3-none-any.whl[stable]"
+pip install "../../dist/peptdeep-1.3.0-py3-none-any.whl[stable]"
 
 # Creating the stand-alone pyinstaller folder
 pip install pyinstaller

diff --git a/release/windows/peptdeep_innoinstaller.iss b/release/windows/peptdeep_innoinstaller.iss
@@ -5,7 +5,7 @@
 ; so all paths are given relative to the location of this .iss file.
 
 #define MyAppName "peptdeep"
-#define MyAppVersion "1.2.1"
+#define MyAppVersion "1.3.0"
 #define MyAppPublisher "Max Planck Institute of Biochemistry and the University of Copenhagen, Mann Labs"
 #define MyAppURL "https://github.com/MannLabs/peptdeep"
 #define MyAppExeName "peptdeep_gui.exe"
@@ -30,7 +30,7 @@ PrivilegesRequired=lowest
 PrivilegesRequiredOverridesAllowed=dialog
 ; release workflow expects artifact at root of repository
 OutputDir=..\..\
-; example for BUILD_NAME: peptdeep-1.2.1-windows-amd64
+; example for BUILD_NAME: peptdeep-1.3.0-windows-amd64
 OutputBaseFilename={#GetEnv('BUILD_NAME')}
 SetupIconFile=..\logos\alpha_logo.ico
 Compression=lzma