From f7897f5175a829bcfa9de640d989b07d39bd94d9 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sophia=20M=C3=A4dler?= <15019107+sophiamaedler@users.noreply.github.com> Date: Sun, 16 Feb 2025 20:22:26 +0100 Subject: [PATCH 1/3] update gitsubmodule --- examples/notebooks | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/examples/notebooks b/examples/notebooks index 1f62b461..172527a1 160000 --- a/examples/notebooks +++ b/examples/notebooks @@ -1 +1 @@ -Subproject commit 1f62b4615f30e7b24ca174102911f8bae2238103 +Subproject commit 172527a1104b648a3aa27876746812d5131a1114 From e0908835eef6960cdaea4ed0f4b90f08be91b82f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sophia=20M=C3=A4dler?= <15019107+sophiamaedler@users.noreply.github.com> Date: Sun, 16 Feb 2025 21:10:07 +0100 Subject: [PATCH 2/3] update submodule --- examples/notebooks | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/examples/notebooks b/examples/notebooks index 172527a1..d2422c67 160000 --- a/examples/notebooks +++ b/examples/notebooks @@ -1 +1 @@ -Subproject commit 172527a1104b648a3aa27876746812d5131a1114 +Subproject commit d2422c67703743ca528469cfdc227be43424b3f2 From 86f0ce6dbf95f8d1b372dfc5ebf252b9f70a9c6f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Sophia=20M=C3=A4dler?= <15019107+sophiamaedler@users.noreply.github.com> Date: Sun, 16 Feb 2025 21:11:21 +0100 Subject: [PATCH 3/3] [UPDATE] cellpose version to 3.1.1 - this now supports MacOS --- requirements.txt | 4 ++-- requirements_dev.txt | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/requirements.txt b/requirements.txt index f5c86aa6..8e1ee8a9 100755 --- a/requirements.txt +++ b/requirements.txt @@ -1,5 +1,5 @@ tqdm -numpy<2.0.0 +numpy pandas numba matplotlib @@ -23,7 +23,7 @@ opencv-python scikit-image>=0.22.0 scikit-fmm scipy -cellpose<3.1.0 +cellpose>=3.1.1 torch pytorch-lightning diff --git a/requirements_dev.txt b/requirements_dev.txt index 50c7c443..3e0eea11 100644 --- a/requirements_dev.txt +++ b/requirements_dev.txt @@ -23,7 +23,7 @@ opencv-python scikit-image>=0.22.0 scikit-fmm scipy -cellpose<3.1.0 +cellpose>=3.1.1 torch pytorch-lightning