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Bracken v.2.6.0 install problem #25

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alnf opened this issue Jan 19, 2022 · 1 comment
Open

Bracken v.2.6.0 install problem #25

alnf opened this issue Jan 19, 2022 · 1 comment

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@alnf
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alnf commented Jan 19, 2022

I've encountered the following problem when executing demo pipeline:

Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:

  - feature:/linux-64::__glibc==2.33=0
  - bracken==2.6.0 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
  - python=3.8 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.33

The only similar issue I found in the internet was about mixture of packages from different channels. Executing following command manually fixed the error:

conda install -p vendor/conda/CAP_v2_bracken_kraken2 -c bioconda -c conda-forge bracken==2.6.0 -y

Not sure how reproducible the issue is, but you might want to look at it, since it breaks normal pipeline execution.

@nanusefue
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@alnf @dcdanko you can add others channels for solved this problems.
before running the program.

conda config --add channels defaults 
conda config --add channels bioconda 
conda config --add channels conda-forge

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