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I've encountered the following problem when executing demo pipeline:
Output in format: Requested package -> Available versionsThe following specifications were found to be incompatible with your system:
- feature:/linux-64::__glibc==2.33=0
- bracken==2.6.0 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
- python=3.8 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
Your installed version is: 2.33
I've encountered the following problem when executing demo pipeline:
The only similar issue I found in the internet was about mixture of packages from different channels. Executing following command manually fixed the error:
conda install -p vendor/conda/CAP_v2_bracken_kraken2 -c bioconda -c conda-forge bracken==2.6.0 -y
Not sure how reproducible the issue is, but you might want to look at it, since it breaks normal pipeline execution.
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