From 034dee6962857fcde7fc9c3c00d5060757b2d305 Mon Sep 17 00:00:00 2001 From: Pirmin Kaufmann Date: Fri, 17 Nov 2023 15:31:56 +0100 Subject: [PATCH 1/2] Update environment.yml from Python 3.9.7 to Python 3.11.6 --- requirements/environment.yml | 491 +++++++++++++++++++++-------------- 1 file changed, 301 insertions(+), 190 deletions(-) diff --git a/requirements/environment.yml b/requirements/environment.yml index 965b144b..08607799 100644 --- a/requirements/environment.yml +++ b/requirements/environment.yml @@ -5,225 +5,336 @@ channels: dependencies: - _libgcc_mutex=0.1 - _openmp_mutex=4.5 - - alabaster=0.7.12 - - alsa-lib=1.2.3 - - appdirs=1.4.4 - - astroid=2.8.5 - - attrs=21.2.0 - - babel=2.9.1 - - backcall=0.2.0 + - alabaster=0.7.13 + - alsa-lib=1.2.10 + - anaconda-client=1.12.1 + - anaconda-project=0.11.1 + - annotated-types=0.6.0 + - anyio=3.7.1 + - astroid=3.0.1 + - asttokens=2.4.1 + - attr=2.5.1 + - attrs=23.1.0 + - babel=2.13.1 - backports=1.0 - - backports.functools_lru_cache=1.6.4 - - black=21.12b0 - - brotli=1.0.9 - - brotli-bin=1.0.9 - - brotlipy=0.7.0 - - bump2version=1.0.1 + - backports.functools_lru_cache=1.6.5 + - beautifulsoup4=4.12.2 + - black=23.10.1 + - blosc=1.21.5 + - boa=0.15.1 + - brotli=1.1.0 + - brotli-bin=1.1.0 + - brotli-python=1.1.0 - bzip2=1.0.8 - - c-ares=1.18.1 - - ca-certificates=2021.10.8 - - cartopy=0.20.1 - - certifi=2021.10.8 - - cffi=1.15.0 + - c-ares=1.21.0 + - ca-certificates=2023.7.22 + - cairo=1.18.0 + - cartopy=0.22.0 + - certifi=2023.7.22 + - cffi=1.16.0 - cfgv=3.3.1 - - cftime=1.5.1.1 - - chardet=4.0.0 - - charset-normalizer=2.0.0 - - click=8.0.4 - - codespell=2.1.0 - - colorama=0.4.4 - - cryptography=35.0.0 - - curl=7.80.0 - - cycler=0.11.0 + - cftime=1.6.3 + - chardet=5.2.0 + - charset-normalizer=3.3.2 + - click=8.1.7 + - clyent=1.2.2 + - codespell=2.2.6 + - colorama=0.4.6 + - conda=22.9.0 + - conda-build=3.25.0 + - conda-index=0.3.0 + - conda-pack=0.7.1 + - conda-package-handling=2.2.0 + - conda-package-streaming=0.9.0 + - contourpy=1.2.0 + - cryptography=41.0.5 + - cycler=0.12.1 - dataclasses=0.8 - dbus=1.13.6 - - decorator=5.1.0 - - distlib=0.3.3 - - docutils=0.16 - - editdistance-s=1.0.0 - - expat=2.4.1 - - filelock=3.3.2 - - flake8=4.0.1 - - flake8-black=0.2.3 - - fontconfig=2.13.1 - - freetype=2.10.4 + - decorator=5.1.1 + - defusedxml=0.7.1 + - dill=0.3.7 + - distlib=0.3.7 + - docutils=0.20.1 + - exceptiongroup=1.1.3 + - executing=2.0.1 + - expat=2.5.0 + - filelock=3.13.1 + - flake8=6.1.0 + - flake8-black=0.3.6 + - fmt=9.1.0 + - font-ttf-dejavu-sans-mono=2.37 + - font-ttf-inconsolata=3.000 + - font-ttf-source-code-pro=2.038 + - font-ttf-ubuntu=0.83 + - fontconfig=2.14.2 + - fonts-conda-ecosystem=1 + - fonts-conda-forge=1 + - fonttools=4.44.3 + - freetype=2.12.1 - geographiclib=1.52 - - geopy=2.2.0 - - geos=3.10.0 - - gettext=0.19.8.1 - - giflib=5.2.1 - - glib=2.70.0 - - glib-tools=2.70.0 - - gst-plugins-base=1.18.5 - - gstreamer=1.18.5 + - geopy=2.4.0 + - geos=3.12.0 + - gettext=0.21.1 + - glib=2.78.1 + - glib-tools=2.78.1 + - glob2=0.7 + - graphite2=1.3.13 + - gst-plugins-base=1.22.7 + - gstreamer=1.22.7 + - harfbuzz=8.3.0 - hdf4=4.2.15 - - hdf5=1.12.1 - - icu=68.2 - - identify=2.3.6 - - idna=3.1 - - imagesize=1.3.0 - - importlib-metadata=3.10.1 - - iniconfig=1.1.1 - - intel-openmp=2021.4.0 - - ipdb=0.13.9 - - ipython=7.30.1 - - isort=5.10.1 - - jbig=2.1 - - jedi=0.18.0 - - jinja2=3.0.3 - - jpeg=9d + - hdf5=1.14.2 + - icu=73.2 + - identify=2.5.31 + - idna=3.4 + - imagesize=1.4.1 + - importlib-metadata=4.13.0 + - importlib_resources=6.1.1 + - iniconfig=2.0.0 + - ipdb=0.13.13 + - ipython=8.17.2 + - isort=5.12.0 + - jedi=0.19.1 + - jinja2=3.1.2 + - joblib=1.3.2 + - json5=0.9.14 + - jsonschema=4.20.0 + - jsonschema-specifications=2023.11.1 + - jupyter_core=5.5.0 - keyutils=1.6.1 - - kiwisolver=1.3.2 - - krb5=1.19.2 - - lazy-object-proxy=1.6.0 - - lcms2=2.12 - - ld_impl_linux-64=2.36.1 - - lerc=3.0 + - kiwisolver=1.4.5 + - krb5=1.21.2 + - lame=3.100 + - lcms2=2.15 + - ld_impl_linux-64=2.40 + - lerc=4.0.0 + - libaec=1.1.2 + - libarchive=3.6.2 - libblas=3.9.0 - - libbrotlicommon=1.0.9 - - libbrotlidec=1.0.9 - - libbrotlienc=1.0.9 + - libbrotlicommon=1.1.0 + - libbrotlidec=1.1.0 + - libbrotlienc=1.1.0 + - libcap=2.69 - libcblas=3.9.0 - - libclang=11.1.0 - - libcurl=7.80.0 - - libdeflate=1.8 + - libclang=15.0.7 + - libclang13=15.0.7 + - libcups=2.3.3 + - libcurl=8.4.0 + - libdeflate=1.19 - libedit=3.1.20191231 - libev=4.33 - - libevent=2.1.10 + - libevent=2.1.12 + - libexpat=2.5.0 - libffi=3.4.2 - - libgcc-ng=11.2.0 - - libgfortran-ng=11.2.0 - - libgfortran5=11.2.0 - - libglib=2.70.0 - - libgomp=11.2.0 - - libiconv=1.16 + - libflac=1.4.3 + - libgcc-ng=13.2.0 + - libgcrypt=1.10.2 + - libgfortran-ng=13.2.0 + - libgfortran5=13.2.0 + - libglib=2.78.1 + - libgomp=13.2.0 + - libgpg-error=1.47 + - libiconv=1.17 + - libjpeg-turbo=3.0.0 - liblapack=3.9.0 - - libllvm11=11.1.0 - - libllvm9=9.0.1 - - libnetcdf=4.8.1 - - libnghttp2=1.43.0 - - libnsl=2.0.0 + - liblief=0.12.3 + - libllvm15=15.0.7 + - libmamba=1.4.2 + - libmambapy=1.4.2 + - libnetcdf=4.9.2 + - libnghttp2=1.58.0 + - libnsl=2.0.1 - libogg=1.3.4 - - libopenblas=0.3.18 + - libopenblas=0.3.24 - libopus=1.3.1 - - libpng=1.6.37 - - libpq=13.3 - - libssh2=1.10.0 - - libstdcxx-ng=11.2.0 - - libtiff=4.3.0 - - libuuid=2.32.1 + - libpng=1.6.39 + - libpq=16.1 + - libsndfile=1.2.2 + - libsolv=0.7.26 + - libsqlite=3.44.0 + - libssh2=1.11.0 + - libstdcxx-ng=13.2.0 + - libsystemd0=254 + - libtiff=4.6.0 + - libuuid=2.38.1 - libvorbis=1.3.7 - - libwebp=1.2.1 - - libwebp-base=1.2.1 - - libxcb=1.13 - - libxkbcommon=1.0.3 - - libxml2=2.9.12 - - libzip=1.8.0 - - libzlib=1.2.11 + - libwebp-base=1.3.2 + - libxcb=1.15 + - libxkbcommon=1.6.0 + - libxml2=2.11.5 + - libzip=1.10.1 + - libzlib=1.2.13 - livereload=2.6.3 - - llvm-openmp=12.0.1 - - lz4-c=1.9.3 - - markupsafe=2.0.1 - - matplotlib=3.4.3 - - matplotlib-base=3.4.3 - - matplotlib-inline=0.1.3 - - mccabe=0.6.1 - - more-itertools=8.11.0 + - lz4-c=1.9.4 + - lzo=2.10 + - mamba=1.4.2 + - markdown-it-py=3.0.0 + - markupsafe=2.1.3 + - matplotlib=3.8.1 + - matplotlib-base=3.8.1 + - matplotlib-inline=0.1.6 + - mccabe=0.7.0 + - mdurl=0.1.0 + - more-itertools=10.1.0 + - mpg123=1.32.3 - munkres=1.1.4 - - mypy=0.910 - - mypy_extensions=0.4.3 - - mysql-common=8.0.27 - - mysql-libs=8.0.27 - - ncurses=6.2 - - netcdf4=1.5.8 - - nodeenv=1.6.0 - - nspr=4.32 - - nss=3.72 - - numpy=1.22.3 - - olefile=0.46 - - openjpeg=2.4.0 - - openssl=1.1.1l - - packaging=21.0 - - parso=0.8.2 - - pathspec=0.9.0 - - pcre=8.45 + - mypy=1.7.0 + - mypy_extensions=1.0.0 + - mysql-common=8.0.33 + - mysql-libs=8.0.33 + - nbformat=5.9.2 + - ncurses=6.4 + - netcdf4=1.6.5 + - nodeenv=1.8.0 + - nspr=4.35 + - nss=3.94 + - numpy=1.26.0 + - openjpeg=2.5.0 + - openssl=3.1.4 + - packaging=23.2 + - parso=0.8.3 + - patch=2.7.6 + - patchelf=0.17.2 + - pathspec=0.11.2 + - pcre2=10.42 - pexpect=4.8.0 - pickleshare=0.7.5 - - pillow=8.4.0 - - pip=21.3.1 - - platformdirs=2.3.0 - - pluggy=0.13.1 - - pre-commit=2.16.0 - - proj=8.2.0 - - prompt-toolkit=3.0.22 - - psutil=5.8.0 + - pillow=10.1.0 + - pip=23.3.1 + - pixman=0.42.2 + - pkginfo=1.9.6 + - pkgutil-resolve-name=1.3.10 + - platformdirs=3.11.0 + - pluggy=1.3.0 + - ply=3.11 + - pre-commit=3.5.0 + - proj=9.3.0 + - prompt_toolkit=3.0.41 + - psutil=5.9.5 - pthread-stubs=0.4 - ptyprocess=0.7.0 - - py=1.11.0 - - pycodestyle=2.8.0 + - pulseaudio-client=16.1 + - pure_eval=0.2.2 + - py-lief=0.12.3 + - pybind11-abi=4 + - pycodestyle=2.11.1 + - pycosat=0.6.6 - pycparser=2.21 - - pydocstyle=6.1.1 - - pyflakes=2.4.0 - - pygments=2.10.0 - - pylint=2.11.1 - - pyopenssl=21.0.0 - - pyparsing=3.0.6 - - pypdf2=1.26.0 - - pyproj=3.2.1 - - pyqt=5.12.3 - - pyqt-impl=5.12.3 - - pyqt5-sip=4.19.18 - - pyqtchart=5.12 - - pyqtwebengine=5.12.1 - - pyshp=2.1.3 + - pydantic=2.5.1 + - pydantic-core=2.14.3 + - pydocstyle=6.3.0 + - pyflakes=3.1.0 + - pygments=2.16.1 + - pylint=3.0.2 + - pyopenssl=23.3.0 + - pyparsing=3.1.1 + - pypdf2=1.28.4 + - pyproj=3.6.1 + - pyqt=5.15.9 + - pyqt5-sip=12.12.2 + - pyshp=2.3.1 - pysocks=1.7.1 - - pytest=6.2.5 - - python=3.9.7 + - pytest=7.4.3 + - python=3.11.6 - python-dateutil=2.8.2 - - python_abi=3.9 - - pytz=2021.3 - - pyyaml=6.0 - - qt=5.12.9 - - readline=8.1 - - regex=2021.11.10 - - requests=2.26.0 - - rope=0.22.0 - - rstcheck=3.3.1 - - scipy=1.8.0 - - setuptools=59.1.1 - - shapely=1.8.0 + - python-fastjsonschema=2.19.0 + - python-libarchive-c=5.0 + - python_abi=3.11 + - pytoolconfig=1.2.5 + - pytz=2023.3.post1 + - pyyaml=6.0.1 + - qt-main=5.15.8 + - readline=8.2 + - referencing=0.31.0 + - reproc=14.2.4.post0 + - reproc-cpp=14.2.4.post0 + - requests=2.31.0 + - requests-toolbelt=1.0.0 + - rich=13.7.0 + - ripgrep=13.0.0 + - rope=1.11.0 + - rpds-py=0.13.0 + - rstcheck=6.2.0 + - rstcheck-core=1.1.1 + - ruamel.yaml=0.18.5 + - ruamel.yaml.clib=0.2.7 + - ruamel_yaml=0.15.80 + - scipy=1.11.3 + - setuptools=68.2.2 + - shapely=2.0.2 + - shellingham=1.5.4 + - sip=6.7.12 - six=1.16.0 - - snowballstemmer=2.1.0 - - sphinx=4.3.1 + - snappy=1.1.10 + - sniffio=1.3.0 + - snowballstemmer=2.2.0 + - soupsieve=2.5 + - sphinx=7.2.6 - sphinx-autobuild=2021.3.14 - - sphinxcontrib-applehelp=1.0.2 - - sphinxcontrib-devhelp=1.0.2 - - sphinxcontrib-htmlhelp=2.0.0 + - sphinxcontrib-applehelp=1.0.7 + - sphinxcontrib-devhelp=1.0.5 + - sphinxcontrib-htmlhelp=2.0.4 - sphinxcontrib-jsmath=1.0.1 - - sphinxcontrib-qthelp=1.0.3 - - sphinxcontrib-serializinghtml=1.1.5 - - sqlite=3.36.0 - - tbb=2021.4.0 - - tk=8.6.11 + - sphinxcontrib-qthelp=1.0.6 + - sphinxcontrib-serializinghtml=1.1.9 + - sqlite=3.44.0 + - stack_data=0.6.2 + - tk=8.6.13 - toml=0.10.2 - - tomli=1.2.2 - - tornado=6.1 - - tox=3.24.4 - - traitlets=5.1.1 - - typed-ast=1.5.0 - - types-toml=0.10.1 - - typing-extensions=3.10.0.2 - - typing_extensions=3.10.0.2 - - tzdata=2021e - - urllib3=1.26.7 - - virtualenv=20.4.7 - - wcwidth=0.2.5 - - wheel=0.37.0 - - wrapt=1.12.1 - - xorg-libxau=1.0.9 + - tomli=2.0.1 + - tomlkit=0.12.3 + - toolz=0.12.0 + - tornado=6.3.3 + - tqdm=4.66.1 + - traitlets=5.13.0 + - typer=0.9.0 + - types-docutils=0.20.0.3 + - types-setuptools=68.2.0.1 + - types-toml=0.10.8.7 + - typing-extensions=4.8.0 + - typing_extensions=4.8.0 + - tzdata=2023c + - ukkonen=1.0.1 + - urllib3=2.1.0 + - virtualenv=20.24.6 + - watchgod=0.8.2 + - wcwidth=0.2.10 + - wheel=0.41.3 + - xcb-util=0.4.0 + - xcb-util-image=0.4.0 + - xcb-util-keysyms=0.4.0 + - xcb-util-renderutil=0.3.9 + - xcb-util-wm=0.4.1 + - xkeyboard-config=2.40 + - xorg-kbproto=1.0.7 + - xorg-libice=1.1.1 + - xorg-libsm=1.2.4 + - xorg-libx11=1.8.7 + - xorg-libxau=1.0.11 - xorg-libxdmcp=1.1.3 - - xz=5.2.5 + - xorg-libxext=1.3.4 + - xorg-libxrender=0.9.11 + - xorg-renderproto=0.11.1 + - xorg-xextproto=7.3.0 + - xorg-xf86vidmodeproto=2.3.1 + - xorg-xproto=7.0.31 + - xz=5.2.6 - yaml=0.2.5 - - zipp=3.6.0 - - zlib=1.2.11 - - zstd=1.5.0 + - yaml-cpp=0.7.0 + - zipp=3.17.0 + - zlib=1.2.13 + - zstandard=0.22.0 + - zstd=1.5.5 + - pip: + - copier==9.0.1 + - dunamai==1.19.0 + - flake8-pyproject==1.2.3 + - funcy==2.0 + - jinja2-ansible-filters==1.3.2 + - mistune==2.0.5 + - plumbum==1.8.2 + - prompt-toolkit==3.0.36 + - pyyaml-include==1.3.1 + - questionary==2.0.1 + - sphinx-mdinclude==0.5.3 From 25b112e3404744ff950e7278f896125b829f68d0 Mon Sep 17 00:00:00 2001 From: Pirmin Kaufmann Date: Wed, 29 Nov 2023 09:03:10 +0100 Subject: [PATCH 2/2] Update requirements/environment.yml Co-authored-by: Karko93 <41451360+Karko93@users.noreply.github.com> --- requirements/environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/requirements/environment.yml b/requirements/environment.yml index 08607799..d3c6b642 100644 --- a/requirements/environment.yml +++ b/requirements/environment.yml @@ -229,7 +229,7 @@ dependencies: - pylint=3.0.2 - pyopenssl=23.3.0 - pyparsing=3.1.1 - - pypdf2=1.28.4 + - pypdf=3.10.0 - pyproj=3.6.1 - pyqt=5.15.9 - pyqt5-sip=12.12.2