diff --git a/examples/NeuroML/LEMS_SimABCD.xml b/examples/NeuroML/LEMS_SimABCD.xml
index 90571f19..8d6f20e1 100644
--- a/examples/NeuroML/LEMS_SimABCD.xml
+++ b/examples/NeuroML/LEMS_SimABCD.xml
@@ -2,7 +2,7 @@
@@ -19,7 +19,6 @@
-
diff --git a/examples/NeuroML/LEMS_SimFN.xml b/examples/NeuroML/LEMS_SimFN.xml
index 5463b195..30878a37 100644
--- a/examples/NeuroML/LEMS_SimFN.xml
+++ b/examples/NeuroML/LEMS_SimFN.xml
@@ -2,7 +2,7 @@
@@ -19,7 +19,6 @@
-
diff --git a/examples/NeuroML/LEMS_SimIzhikevichTest.xml b/examples/NeuroML/LEMS_SimIzhikevichTest.xml
index 80e90760..a38e06e3 100644
--- a/examples/NeuroML/LEMS_SimIzhikevichTest.xml
+++ b/examples/NeuroML/LEMS_SimIzhikevichTest.xml
@@ -2,7 +2,7 @@
@@ -18,7 +18,6 @@
-
diff --git a/examples/NeuroML/PyNN/HH.mdf.yaml b/examples/NeuroML/PyNN/HH.mdf.yaml
index d3d7bc25..54cfe1f1 100644
--- a/examples/NeuroML/PyNN/HH.mdf.yaml
+++ b/examples/NeuroML/PyNN/HH.mdf.yaml
@@ -135,10 +135,10 @@ HH:
\ bindsnet_node=None)] is defined in None and in Lems is:\
\ Component, id: testcell, type: HH_cond_exp,\n parameters:\
\ {'cm': '0.2', 'i_offset': 0.05, 'tau_syn_E': '0.2', 'tau_syn_I':\
- \ '2.', 'v_init': '-65.', 'v_offset': '-63.', 'e_rev_E': '0.',\
- \ 'e_rev_I': '-80.', 'e_rev_K': '-90.', 'e_rev_Na': '50.',\
- \ 'e_rev_leak': '-65.', 'g_leak': '0.01', 'gbar_K': '6.',\
- \ 'gbar_Na': '20.'}\n parent: None\n"
+ \ '2.0', 'v_init': '-65.0', 'v_offset': '-63.0', 'e_rev_E':\
+ \ '0.0', 'e_rev_I': '-80.0', 'e_rev_K': '-90.0', 'e_rev_Na':\
+ \ '50.0', 'e_rev_leak': '-65.0', 'g_leak': '0.01', 'gbar_K':\
+ \ '6.0', 'gbar_Na': '20.0'}\n parent: None\n"
InputList_stim:
parameters:
delay:
diff --git a/examples/NeuroML/PyNN/HH.net.nml b/examples/NeuroML/PyNN/HH.net.nml
index 46da98e6..202428b1 100644
--- a/examples/NeuroML/PyNN/HH.net.nml
+++ b/examples/NeuroML/PyNN/HH.net.nml
@@ -5,8 +5,8 @@
NeuroMLlite parameters:
input_amp = 0
-
-
+
+
Example: HH
diff --git a/examples/NeuroML/PyNN/InputWeights.mdf.yaml b/examples/NeuroML/PyNN/InputWeights.mdf.yaml
index c0aa1a66..4f48280a 100644
--- a/examples/NeuroML/PyNN/InputWeights.mdf.yaml
+++ b/examples/NeuroML/PyNN/InputWeights.mdf.yaml
@@ -185,9 +185,9 @@ InputWeights:
\ neuroml2_cell=None, pynn_cell='IF_curr_alpha', arbor_cell=None,\
\ bindsnet_node=None)] is defined in None and in Lems is:\
\ Component, id: testcell, type: IF_curr_alpha,\n parameters:\
- \ {'cm': '1.', 'i_offset': 0.0, 'tau_syn_E': '0.5', 'tau_syn_I':\
- \ '0.5', 'v_init': '-65.', 'tau_m': '20.', 'tau_refrac': 5,\
- \ 'v_reset': '-65.', 'v_rest': '-65.', 'v_thresh': '-50.'}\n\
+ \ {'cm': '1.0', 'i_offset': 0.0, 'tau_syn_E': '0.5', 'tau_syn_I':\
+ \ '0.5', 'v_init': '-65.0', 'tau_m': '20.0', 'tau_refrac':\
+ \ 5, 'v_reset': '-65.0', 'v_rest': '-65.0', 'v_thresh': '-50.0'}\n\
\ parent: None\n"
InputList_stim:
parameters:
diff --git a/examples/NeuroML/PyNN/InputWeights.net.nml b/examples/NeuroML/PyNN/InputWeights.net.nml
index 52581ad5..f0bd24f1 100644
--- a/examples/NeuroML/PyNN/InputWeights.net.nml
+++ b/examples/NeuroML/PyNN/InputWeights.net.nml
@@ -5,8 +5,8 @@
NeuroMLlite parameters:
input_amp = 0.99
-
-
+
+
Example: InputWeights
diff --git a/examples/NeuroML/PyNN/Net1.mdf.yaml b/examples/NeuroML/PyNN/Net1.mdf.yaml
index f99d318f..b48cc28f 100644
--- a/examples/NeuroML/PyNN/Net1.mdf.yaml
+++ b/examples/NeuroML/PyNN/Net1.mdf.yaml
@@ -153,9 +153,9 @@ Net1:
\ neuroml2_cell=None, pynn_cell='IF_curr_alpha', arbor_cell=None,\
\ bindsnet_node=None)] is defined in None and in Lems is:\
\ Component, id: testcell, type: IF_curr_alpha,\n parameters:\
- \ {'cm': '1.', 'i_offset': 0.0, 'tau_syn_E': '20.', 'tau_syn_I':\
- \ '0.5', 'v_init': '-65.', 'tau_m': '20.', 'tau_refrac': 5,\
- \ 'v_reset': '-65.', 'v_rest': '-65.', 'v_thresh': '-50.'}\n\
+ \ {'cm': '1.0', 'i_offset': 0.0, 'tau_syn_E': '20.0', 'tau_syn_I':\
+ \ '0.5', 'v_init': '-65.0', 'tau_m': '20.0', 'tau_refrac':\
+ \ 5, 'v_reset': '-65.0', 'v_rest': '-65.0', 'v_thresh': '-50.0'}\n\
\ parent: None\n"
pop1:
metadata:
@@ -322,9 +322,9 @@ Net1:
\ neuroml2_cell=None, pynn_cell='IF_curr_alpha', arbor_cell=None,\
\ bindsnet_node=None)] is defined in None and in Lems is:\
\ Component, id: testcell, type: IF_curr_alpha,\n parameters:\
- \ {'cm': '1.', 'i_offset': 0.0, 'tau_syn_E': '20.', 'tau_syn_I':\
- \ '0.5', 'v_init': '-65.', 'tau_m': '20.', 'tau_refrac': 5,\
- \ 'v_reset': '-65.', 'v_rest': '-65.', 'v_thresh': '-50.'}\n\
+ \ {'cm': '1.0', 'i_offset': 0.0, 'tau_syn_E': '20.0', 'tau_syn_I':\
+ \ '0.5', 'v_init': '-65.0', 'tau_m': '20.0', 'tau_refrac':\
+ \ 5, 'v_reset': '-65.0', 'v_rest': '-65.0', 'v_thresh': '-50.0'}\n\
\ parent: None\n"
proj0_ampaSyn:
parameters:
diff --git a/examples/NeuroML/PyNN/Net1.net.nml b/examples/NeuroML/PyNN/Net1.net.nml
index cd0236f1..0b173eb5 100644
--- a/examples/NeuroML/PyNN/Net1.net.nml
+++ b/examples/NeuroML/PyNN/Net1.net.nml
@@ -5,8 +5,8 @@
NeuroMLlite parameters:
input_amp = 0.99
-
-
+
+
Example: Net1
diff --git a/examples/NeuroML/PyNN/OneCell.mdf.yaml b/examples/NeuroML/PyNN/OneCell.mdf.yaml
index 2d0fe4ac..ffdc977a 100644
--- a/examples/NeuroML/PyNN/OneCell.mdf.yaml
+++ b/examples/NeuroML/PyNN/OneCell.mdf.yaml
@@ -137,9 +137,9 @@ OneCell:
\ neuroml2_cell=None, pynn_cell='IF_curr_alpha', arbor_cell=None,\
\ bindsnet_node=None)] is defined in None and in Lems is:\
\ Component, id: testcell, type: IF_curr_alpha,\n parameters:\
- \ {'cm': '1.', 'i_offset': 0.0, 'tau_syn_E': '0.5', 'tau_syn_I':\
- \ '0.5', 'v_init': '-65.', 'tau_m': '20.', 'tau_refrac': 5,\
- \ 'v_reset': '-65.', 'v_rest': '-65.', 'v_thresh': '-50.'}\n\
+ \ {'cm': '1.0', 'i_offset': 0.0, 'tau_syn_E': '0.5', 'tau_syn_I':\
+ \ '0.5', 'v_init': '-65.0', 'tau_m': '20.0', 'tau_refrac':\
+ \ 5, 'v_reset': '-65.0', 'v_rest': '-65.0', 'v_thresh': '-50.0'}\n\
\ parent: None\n"
InputList_stim:
parameters:
diff --git a/examples/NeuroML/PyNN/OneCell.net.nml b/examples/NeuroML/PyNN/OneCell.net.nml
index 6d5b4c08..3e894506 100644
--- a/examples/NeuroML/PyNN/OneCell.net.nml
+++ b/examples/NeuroML/PyNN/OneCell.net.nml
@@ -5,8 +5,8 @@
NeuroMLlite parameters:
input_amp = 0.99
-
-
+
+
Example: OneCell
diff --git a/examples/NeuroML/PyNN/SimpleNet.mdf.yaml b/examples/NeuroML/PyNN/SimpleNet.mdf.yaml
index 03d480d0..069a77bc 100644
--- a/examples/NeuroML/PyNN/SimpleNet.mdf.yaml
+++ b/examples/NeuroML/PyNN/SimpleNet.mdf.yaml
@@ -137,9 +137,9 @@ SimpleNet:
\ neuroml2_cell=None, pynn_cell='IF_curr_alpha', arbor_cell=None,\
\ bindsnet_node=None)] is defined in None and in Lems is:\
\ Component, id: testcell, type: IF_curr_alpha,\n parameters:\
- \ {'cm': '1.', 'i_offset': 0.0, 'tau_syn_E': '20.', 'tau_syn_I':\
- \ '0.5', 'v_init': '-65.', 'tau_m': '20.', 'tau_refrac': 5,\
- \ 'v_reset': '-65.', 'v_rest': '-65.', 'v_thresh': '-50.'}\n\
+ \ {'cm': '1.0', 'i_offset': 0.0, 'tau_syn_E': '20.0', 'tau_syn_I':\
+ \ '0.5', 'v_init': '-65.0', 'tau_m': '20.0', 'tau_refrac':\
+ \ 5, 'v_reset': '-65.0', 'v_rest': '-65.0', 'v_thresh': '-50.0'}\n\
\ parent: None\n"
pop1:
metadata:
@@ -274,9 +274,9 @@ SimpleNet:
\ neuroml2_cell=None, pynn_cell='IF_curr_alpha', arbor_cell=None,\
\ bindsnet_node=None)] is defined in None and in Lems is:\
\ Component, id: testcell, type: IF_curr_alpha,\n parameters:\
- \ {'cm': '1.', 'i_offset': 0.0, 'tau_syn_E': '20.', 'tau_syn_I':\
- \ '0.5', 'v_init': '-65.', 'tau_m': '20.', 'tau_refrac': 5,\
- \ 'v_reset': '-65.', 'v_rest': '-65.', 'v_thresh': '-50.'}\n\
+ \ {'cm': '1.0', 'i_offset': 0.0, 'tau_syn_E': '20.0', 'tau_syn_I':\
+ \ '0.5', 'v_init': '-65.0', 'tau_m': '20.0', 'tau_refrac':\
+ \ 5, 'v_reset': '-65.0', 'v_rest': '-65.0', 'v_thresh': '-50.0'}\n\
\ parent: None\n"
proj0_ampaSyn:
parameters:
diff --git a/examples/NeuroML/PyNN/SimpleNet.net.nml b/examples/NeuroML/PyNN/SimpleNet.net.nml
index fd1d6097..3788e7fe 100644
--- a/examples/NeuroML/PyNN/SimpleNet.net.nml
+++ b/examples/NeuroML/PyNN/SimpleNet.net.nml
@@ -5,8 +5,8 @@
NeuroMLlite parameters:
input_amp = 0.99
-
-
+
+
Example: SimpleNet
diff --git a/setup.cfg b/setup.cfg
index 190bdf57..465a5843 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -16,16 +16,16 @@ classifiers =
License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
Natural Language :: English
Operating System :: OS Independent
- Programming Language :: Python :: 3.6
+ Programming Language :: Python :: 3.8
Topic :: Scientific/Engineering
Intended Audience :: Science/Research
Programming Language :: Python
Programming Language :: Python :: 3
Programming Language :: Python :: 3 :: Only
- Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
+ Programming Language :: Python :: 3.11
Topic :: Scientific/Engineering
Topic :: Software Development
Typing :: Typed
@@ -35,7 +35,7 @@ packages = find:
install_requires =
typing_compat;python_version<'3.8'
dataclasses;python_version<'3.7'
- graph_scheduler>=1.1.1
+ graph_scheduler<1.2.0,>=1.1.1
numpy
matplotlib
graphviz
@@ -89,7 +89,7 @@ optional =
Jinja2<3.1
torchviz
netron
- torch>=1.11.0
+ torch<2.2.0,>=1.11.0
torchvision
h5py