Updates to SNPMeta will be documented here. Versioning follows the form X.Y, where X is the major version, and Y is the minor version. Major version increments involve alterations to the way the user interacts with the program, or fundamentally change how the program behaves. Minor version increments are small feature additions or bug fixes. Modifications to documentation do not alter version numbers.
- Fixed a bug that caused SNPs with no BLAST hits to either be omitted from the
final report, or throw a
UnboundLocalError.
- Transitioned from Python 2 to Python 3.
- Reorganized script into modules, flow of data through the script should make more sense now.
- Fixed a reverse-complement logic error.
- Use temporary files instead of fixed filenames, which can cause problems with users' existing files or multiple instances of SNPMeta.
- Debugging messages to keep track of progress. SNPMeta now prints some diagnostic messages related to BLAST searching and record fetching.
- Option to run TBLASTX on local databases.
- Verbose flag (
-v). Output format is now specified by the--outfmtoption.
- Counting mechanism, so that SNPMeta moves on if it can't fetch GenBank records, for some reason.
- Routine to split the GenBank IDs into smaller lists, so that we can avoid a 414 (Request string too long) error.
- Fixed the way SNPMeta looks for SNPs and XML records to annotate
when the
-dand--no-blastoptions are given.