From 8a29fae0d288c9247fc105817c7adce44db966d0 Mon Sep 17 00:00:00 2001
From: anton083 <anton.oresten42@gmail.com>
Date: Fri, 17 Nov 2023 21:35:08 +0100
Subject: [PATCH] MiSSing -> Unassigned

---
 src/ribbon/segment.jl  | 8 ++++----
 test/ribbon/segment.jl | 2 +-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/src/ribbon/segment.jl b/src/ribbon/segment.jl
index 131f4f1..f3ec7d7 100644
--- a/src/ribbon/segment.jl
+++ b/src/ribbon/segment.jl
@@ -4,7 +4,7 @@ export Segment, extend_segment, segments
     Segment{SS, T}
 
 A segment of a chain with uniform secondary structure.
-The segment can have mixed secondary structure if the `SS` type parameter is `MiSSing`.
+The segment can have mixed secondary structure if the `SS` type parameter is `Unassigned`.
 """
 struct Segment{SS, T}
     chain::Chain{T}
@@ -13,13 +13,13 @@ struct Segment{SS, T}
 
     function Segment{SS}(chain::Chain{T}, range::UnitRange{Int}) where {SS, T}
         ssvector = view(chain.ssvector, range)
-        @assert SS == MiSSing || all(==(SS), ssvector) "All residues in the '$SS' segment must have the '$SS' secondary structure"
+        @assert SS == Unassigned || all(==(SS), ssvector) "All residues in the '$SS' segment must have the '$SS' secondary structure"
         backbone = chain.backbone[range]
         return new{SS, T}(chain, range, backbone)
     end
 
     function Segment(chain::Chain{T}, range::UnitRange{Int}) where T
-        SS = allequal(ssvector) ? ssvector[1] : MiSSing
+        SS = allequal(ssvector) ? ssvector[1] : Unassigned
         return Segment{SS}(chain, range)
     end
 end
@@ -48,7 +48,7 @@ This function is useful if one wishes to access the coordinates of the atoms of
     parent_vec_range = range .+ offset
     adjusted_range = max(1, parent_vec_range.start):min(length(segment.chain), parent_vec_range.stop)
     #checkbounds(segment.chain.backbone, parent_vec_range)
-    return Segment{MiSSing}(segment.chain, adjusted_range)
+    return Segment{Unassigned}(segment.chain, adjusted_range)
 end
 
 """
diff --git a/test/ribbon/segment.jl b/test/ribbon/segment.jl
index bf267fa..2006ed0 100644
--- a/test/ribbon/segment.jl
+++ b/test/ribbon/segment.jl
@@ -14,7 +14,7 @@
         chain = Chain("A", Backbone(randn(3, 4, 5)))
         chain.ssvector .= [Loop, Helix, Strand, Strand, Helix]
         segment = Segment{Strand}(chain, 3:4)
-        @test extend_segment(segment, 0:3) == Segment{MiSSing}(chain, 2:5)
+        @test extend_segment(segment, 0:3) == Segment{Unassigned}(chain, 2:5)
     end
 
     @testset "segments" begin