diff --git a/dev/.documenter-siteinfo.json b/dev/.documenter-siteinfo.json index 03990ee..dd3b693 100644 --- a/dev/.documenter-siteinfo.json +++ b/dev/.documenter-siteinfo.json @@ -1 +1 @@ -{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-08-21T22:01:52","documenter_version":"1.5.0"}} \ No newline at end of file +{"documenter":{"julia_version":"1.10.4","generation_timestamp":"2024-08-21T22:24:46","documenter_version":"1.6.0"}} \ No newline at end of file diff --git a/dev/assets/documenter.js b/dev/assets/documenter.js index b2bdd43..82252a1 100644 --- a/dev/assets/documenter.js +++ b/dev/assets/documenter.js @@ -77,30 +77,35 @@ require(['jquery'], function($) { let timer = 0; var isExpanded = true; -$(document).on("click", ".docstring header", function () { - let articleToggleTitle = "Expand docstring"; - - debounce(() => { - if ($(this).siblings("section").is(":visible")) { - $(this) - .find(".docstring-article-toggle-button") - .removeClass("fa-chevron-down") - .addClass("fa-chevron-right"); - } else { - $(this) - .find(".docstring-article-toggle-button") - .removeClass("fa-chevron-right") - .addClass("fa-chevron-down"); +$(document).on( + "click", + ".docstring .docstring-article-toggle-button", + function () { + let articleToggleTitle = "Expand docstring"; + const parent = $(this).parent(); + + debounce(() => { + if (parent.siblings("section").is(":visible")) { + parent + .find("a.docstring-article-toggle-button") + .removeClass("fa-chevron-down") + .addClass("fa-chevron-right"); + } else { + parent + .find("a.docstring-article-toggle-button") + .removeClass("fa-chevron-right") + .addClass("fa-chevron-down"); - articleToggleTitle = "Collapse docstring"; - } + articleToggleTitle = "Collapse docstring"; + } - $(this) - .find(".docstring-article-toggle-button") - .prop("title", articleToggleTitle); - $(this).siblings("section").slideToggle(); - }); -}); + parent + .children(".docstring-article-toggle-button") + .prop("title", articleToggleTitle); + parent.siblings("section").slideToggle(); + }); + } +); $(document).on("click", ".docs-article-toggle-button", function (event) { let articleToggleTitle = "Expand docstring"; @@ -110,7 +115,7 @@ $(document).on("click", ".docs-article-toggle-button", function (event) { debounce(() => { if (isExpanded) { $(this).removeClass("fa-chevron-up").addClass("fa-chevron-down"); - $(".docstring-article-toggle-button") + $("a.docstring-article-toggle-button") .removeClass("fa-chevron-down") .addClass("fa-chevron-right"); @@ -119,7 +124,7 @@ $(document).on("click", ".docs-article-toggle-button", function (event) { $(".docstring section").slideUp(animationSpeed); } else { $(this).removeClass("fa-chevron-down").addClass("fa-chevron-up"); - $(".docstring-article-toggle-button") + $("a.docstring-article-toggle-button") .removeClass("fa-chevron-right") .addClass("fa-chevron-down"); diff --git a/dev/index.html b/dev/index.html index d68ac64..0d849b9 100644 --- a/dev/index.html +++ b/dev/index.html @@ -1,5 +1,5 @@ -Home · ProteinChains.jl
GitHub

ProteinChains

Documentation for ProteinChains.

ProteinChains.BackboneGeometry — Type
BackboneGeometry(;
+Home · ProteinChains.jl
GitHub
ProteinChains
Documentation for ProteinChains.
ProteinChains.BackboneGeometry — Type
BackboneGeometry(;
     N_Ca_length = 1.46,
     Ca_C_length = 1.52,
     C_N_length = 1.33,
@@ -7,9 +7,9 @@
     N_Ca_C_angle = 1.94,
     Ca_C_N_angle = 2.03,
     C_N_Ca_angle = 2.13,
-)
Define the idealized bond lengths and bond angles of a protein backbone.
source
ProteinChains.IdealResidue — Type
IdealResidue{T<:AbstractFloat} <: AbstractMatrix{T}
+)
Define the idealized bond lengths and bond angles of a protein backbone.
source
ProteinChains.IdealResidue — Type
IdealResidue{T<:AbstractFloat} <: AbstractMatrix{T}
 
-IdealResidue{T}(backbone_geometry::BackboneGeometry=DEFAULT_BACKBONE_GEOMETRY)
source
ProteinChains.ProteinChain — Type
ProteinChain{T<:AbstractFloat}
Examples
julia> structure = pdb"1EYE";
+IdealResidue{T}(backbone_geometry::BackboneGeometry=DEFAULT_BACKBONE_GEOMETRY)
source
ProteinChains.ProteinChain — Type
ProteinChain{T<:AbstractFloat}
Examples
julia> structure = pdb"1EYE";
 [ Info: Downloading file from PDB: 1EYE
 
 julia> structure[1]
@@ -21,4 +21,4 @@
     atoms::Vector{Vector{ProteinChains.Atom{Float64}}} = Vector{Atom{Float64}}[[Atom{Float64}(0x4f202020, 0x08, 44.41, -9.176, 32.157), Atom{Float64}(0x4243…
   properties:
     numbering::Vector{Int64} = [5, 6, 7, 8, 9, 10, 11, 12, 13, 14  …  265, 266, 267, 268, 269, 270, 271, 272, 273, 274]
-    modelnum::Int64 = 1
source
ProteinChains.append_residue — Method
append_residue(Backbone::Backbone, torsion_angles::Vector{<:Real}; ideal::BackboneGeometry=DEFAULT_BACKBONE_GEOMETRY)
Create a new backbone by appending 3 torsion angles (ψ, ω, ϕ) at the end, using bond lengths and bond angles specified in BackboneGeometry.
source
ProteinChains.prepend_residue — Method
append_residue(Backbone::Backbone, torsion_angles::Vector{<:Real}; ideal::BackboneGeometry=DEFAULT_BACKBONE_GEOMETRY)
Create a new backbone by prepending 3 torsion angles (ψ, ω, ϕ) at the end, using bond lengths and bond angles specified in BackboneGeometry.
Note
The torsion angle order is the same as it would be when appending. The order is not reversed.
source

+    modelnum::Int64 = 1
source
ProteinChains.append_residue — Method
append_residue(Backbone::Backbone, torsion_angles::Vector{<:Real}; ideal::BackboneGeometry=DEFAULT_BACKBONE_GEOMETRY)

Create a new backbone by appending 3 torsion angles (ψ, ω, ϕ) at the end, using bond lengths and bond angles specified in BackboneGeometry.

source
ProteinChains.prepend_residue — Method
append_residue(Backbone::Backbone, torsion_angles::Vector{<:Real}; ideal::BackboneGeometry=DEFAULT_BACKBONE_GEOMETRY)

Create a new backbone by prepending 3 torsion angles (ψ, ω, ϕ) at the end, using bond lengths and bond angles specified in BackboneGeometry.

Note

The torsion angle order is the same as it would be when appending. The order is not reversed.

source