Fix decontaminate subworkflow

NBISweden · Nov 20, 2024 · 2fca1ac · 2fca1ac
1 parent 7dd6f20
commit 2fca1ac
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/subworkflows/local/decontaminate/main.nf b/subworkflows/local/decontaminate/main.nf
@@ -28,7 +28,8 @@ workflow DECONTAMINATE {
     )
     ch_cleaned_assemblies = constructAssemblyRecord(
         FCSGX_CLEAN.out.clean_fasta
-            .map { meta, asm -> [ meta.subMap(meta.keySet()-['haplotype']), asm ] }
+            .map { meta, asm -> [ meta.subMap(meta.keySet()-['haplotype']), asm ] },
+        true
     )
 
     emit: