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This repository has been archived by the owner on Dec 16, 2019. It is now read-only.

NBISweden/LocalEGA

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NBIS repository for the Local EGA project

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The code is written in Python (3.6+).

You can provision and deploy the different components:

Architecture

LocalEGA is divided into several components, whether as docker containers or as virtual machines.

Components Role
db A Postgres database with appropriate schema
mq A RabbitMQ message broker with appropriate accounts, exchanges, queues and bindings
inbox SFTP server, acting as a dropbox, where user credentials come from CentralEGA
keyserver Handles the encryption/decryption keys
ingesters Split the Crypt4GH header and move the remainder to the storage backend. No cryptographic task, nor connection to the keyserver.
verifiers Connect to the keyserver (via SSL) and decrypt the stored files and checksum them against their embedded checksum.
vault Storage backend: as a regular file system or as a S3 object store.
controllers Plugin-based Quality Controllers, running in the background. store.

Find the LocalEGA documentation hosted on ReadTheDocs.org.