Merge pull request #495 from NCATSTranslator/removeAppraise

Removing calls to appraise and scoring
NCATSTranslator · Sep 1, 2023 · a0d7414 · a0d7414
2 parents 613bdcf + 40987d0
commit a0d7414
Showing 1 changed file with 36 additions and 36 deletions.
diff --git a/tr_sys/tr_ars/utils.py b/tr_sys/tr_ars/utils.py
@@ -538,42 +538,42 @@ def post_process(data,key, agent_name):
         scrub_null_attributes(data)
     except Exception as e:
         logging.info("Problem with the second scrubbing of null attributes")
-    try:
-        appraise(mesg,data,agent_name)
-        logging.info("appraiser successful")
-    except Exception as e:
-        code = 422
-        results = get_safe(data,"message","results")
-        default_ordering_component = {
-            "novelty": 0,
-            "confidence": 0,
-            "clinical_evidence": 0
-        }
-        if results is not None:
-            for result in results:
-                if 'ordering_components' not in result.keys():
-                    result['ordering_components']=default_ordering_component
-                else:
-                    continue
-        else:
-            logging.error('results returned from appraiser is None')
-
-        #post_processing_error(mesg,data,"Error in appraiser")
-        logging.error("Error with appraise for "+str(key))
-        logging.exception("Error in appraiser post process function")
-        #raise e
-    try:
-        results = get_safe(data,"message","results")
-        if results is not None:
-            new_res=scoring.compute_from_results(results)
-            logging.info("scoring succeeded")
-        else:
-            logging.error('results from appraiser returns None, cant do the scoring')
-        print()
-    except Exception as e:
-        post_processing_error(mesg,data,"Error in f-score calculation")
-        logging.exception("Error in f-score calculation")
-        raise e
+    # try:
+    #     appraise(mesg,data,agent_name)
+    #     logging.info("appraiser successful")
+    # except Exception as e:
+    #     code = 422
+    #     results = get_safe(data,"message","results")
+    #     default_ordering_component = {
+    #         "novelty": 0,
+    #         "confidence": 0,
+    #         "clinical_evidence": 0
+    #     }
+    #     if results is not None:
+    #         for result in results:
+    #             if 'ordering_components' not in result.keys():
+    #                 result['ordering_components']=default_ordering_component
+    #             else:
+    #                 continue
+    #     else:
+    #         logging.error('results returned from appraiser is None')
+    #
+    #     #post_processing_error(mesg,data,"Error in appraiser")
+    #     logging.error("Error with appraise for "+str(key))
+    #     logging.exception("Error in appraiser post process function")
+    #     #raise e
+    # try:
+    #     results = get_safe(data,"message","results")
+    #     if results is not None:
+    #         new_res=scoring.compute_from_results(results)
+    #         logging.info("scoring succeeded")
+    #     else:
+    #         logging.error('results from appraiser returns None, cant do the scoring')
+    #     print()
+    # except Exception as e:
+    #     post_processing_error(mesg,data,"Error in f-score calculation")
+    #     logging.exception("Error in f-score calculation")
+    #     raise e
     mesg.status='D'
     mesg.code=code
     mesg.data = data