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camilavargasp committed Oct 2, 2024
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39 changes: 22 additions & 17 deletions 2024-10-coreR/index.html
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>

<meta charset="utf-8">
<meta name="generator" content="quarto-1.5.56">
<meta name="generator" content="quarto-1.5.57">

<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">

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<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./session_01.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Welcome: Let’s Talk About Reproducibility</span></span></a>
<span class="menu-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Course Introduction</span></span></a>
</div>
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<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./session_04.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Introduction to R &amp; RStudio</span></span></a>
<span class="menu-text"><span class="chapter-number">4</span>&nbsp; <span class="chapter-title">Working in R &amp; RStudio</span></span></a>
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<li class="sidebar-item">
<div class="sidebar-item-container">
<a href="./session_07.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Introduction to Git and GtiHub</span></span></a>
<span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Git and GtiHub</span></span></a>
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<a href="./session_17.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">17</span>&nbsp; <span class="chapter-title">Writing Functions and Packages</span></span></a>
<span class="menu-text"><span class="chapter-number">17</span>&nbsp; <span class="chapter-title">Writing Functions</span></span></a>
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<a href="./session_21.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">21</span>&nbsp; <span class="chapter-title">Reproducibility &amp; Provenance</span></span></a>
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<a href="./session_22.html" class="sidebar-item-text sidebar-link">
<span class="menu-text"><span class="chapter-number">22</span>&nbsp; <span class="chapter-title">Installing R and Git in your computer</span></span></a>
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<header id="title-block-header" class="quarto-title-block default">
<div class="quarto-title">
<h1 class="title">NCEAS Learning Hub’s coreR Course</h1>
<p class="subtitle lead">October 7 - 11, 2024</p>
<p class="subtitle lead">October 7-11, 2024</p>
</div>


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<p><img src="cover.png" class="img-fluid quarto-figure quarto-figure-center figure-img" style="width:80.0%"></p>
</figure>
</div>
</div></div><section id="welcome" class="level2 unnumbered page-columns page-full">
</div></div><section id="welcome" class="level2 unnumbered">
<h2 class="unnumbered anchored" data-anchor-id="welcome">Welcome!</h2>
<p>coreR is a five-day immersion in R programming for environmental data science. Researchers will gain experience with essential data science tools and best practices to increase their capacity as collaborators, reproducible coders, and open scientists.</p>
<section id="course-learning-objectives" class="level3">
<h3 class="anchored" data-anchor-id="course-learning-objectives">Course Learning Objectives</h3>
<ul>
<li>Effectively manage data using <code>tidy</code> data practices and developing quality metadata</li>
<li>Establish best practices and utilize tools like Git &amp; GitHub, and Data Management Plans to optimize your collaboration</li>
<li>Better communicate scientific analyses and results using Markdown, GitHub webpages, and R packages like <code>ggplot</code> and <code>leaflet</code></li>
<li>Increase your familiarity and confidence with data science tools</li>
<li>Overview of tools you can use within the R programming language and RStudio interface</li>
<li>Effectively manage data using <code>tidy</code> data practices and understanding the importance of quality metadata</li>
<li>Establish best practices and utilize tools like Git &amp; GitHub to optimize collaboration</li>
<li>Better communicate scientific analyses and results using Markdown, GitHub webpages, and R packages like <code>ggplot</code> and <code>leaflet</code></li>
</ul>
</section>
<section id="weeks-schedule" class="level3 page-columns page-full">
<section id="weeks-schedule" class="level3">
<h3 class="anchored" data-anchor-id="weeks-schedule">Week’s Schedule</h3>
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<!-- ![](images/schedule.png) -->
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<p><img src="images/schedule.png" class="img-fluid"></p>
</section>
</section>
<section id="nceas-expertise" class="level2">
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<h2 class="anchored" data-anchor-id="about-this-book">About this book</h2>
<p>These written materials are the result of a continuous and collaborative effort at NCEAS to help researchers make their work more transparent and reproducible. This work began in the early 2000’s, and reflects the expertise and diligence of many, many individuals. The primary authors are listed in the citation below, with additional contributors recognized for their role in developing previous iterations of these or similar materials.</p>
<p>This work is licensed under a <a href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.</p>
<p><strong>UPDATE</strong> <strong>Citation:</strong> Camila Vargas Poulsen &amp; Angel Chen (2024), NCEAS coreR for Delta Science Program, June 2024, NCEAS Learning Hub. URL <a href="https://learning.nceas.ucsb.edu/2024-06-delta" class="uri">https://learning.nceas.ucsb.edu/2024-06-delta</a>.</p>
<p><strong>Citation:</strong> Camila Vargas Poulsen, Casey Ohara, Shayna Sura (2024), NCEAS coreR for Delta Science Program, October 2024, NCEAS Learning Hub. URL <a href="https://learning.nceas.ucsb.edu/2024-10-coreR" class="uri">https://learning.nceas.ucsb.edu/2024-10-coreR</a>.</p>
<p><strong>Additional contributors:</strong> Ben Bolker, Amber E. Budden, Julien Brun, Samantha Csik, Halina Do-Linh, Natasha Haycock-Chavez, S. Jeanette Clark, Julie Lowndes, Stephanie Hampton, Matt Jone, Samanta Katz, Erin McLean, Bryce Mecum, Deanna Pennington, Karthik Ram, Jim Regetz, Tracy Teal, Daphne Virlar-Knight, Leah Wasser.</p>
<p>This is a Quarto book. To learn more about Quarto books visit <a href="https://quarto.org/docs/books" class="uri">https://quarto.org/docs/books</a>.</p>

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<div class="nav-page nav-page-previous">
</div>
<div class="nav-page nav-page-next">
<a href="./session_01.html" class="pagination-link" aria-label="Welcome: Let's Talk About Reproducibility">
<span class="nav-page-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Welcome: Let’s Talk About Reproducibility</span></span> <i class="bi bi-arrow-right-short"></i>
<a href="./session_01.html" class="pagination-link" aria-label="Course Introduction">
<span class="nav-page-text"><span class="chapter-number">1</span>&nbsp; <span class="chapter-title">Course Introduction</span></span> <i class="bi bi-arrow-right-short"></i>
</a>
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