Install the Docker Engine: https://docs.docker.com/engine/installation/
Clone repositories including the sample mouse brain data:
git clone https://github.com/carlohamalainen/volgenmodel-nipype.git
cd volgenmodel-nipype/docker
git clone https://github.com/carlohamalainen/volgenmodel-fast-example.git # about 96Mb
Build and run:
./build.sh && docker run -i -t carlo/volgenmodel-nipype /bin/bash /opt/go.sh
End of output should look like:
160110-04:08:59,19 workflow INFO:
[Job finished] jobname: volsymm_final_model_02_ jobid: 75
160110-04:08:59,22 workflow INFO:
Pending[0] Submitting[1] jobs Slots[inf]
160110-04:08:59,23 workflow INFO:
Executing: datasink ID: 76
160110-04:08:59,30 workflow INFO:
Finished executing: datasink ID: 76
160110-04:08:59,32 workflow INFO:
Executing node datasink in dir: /scratch/volgenmodel-fast-example/workflow/datasink
160110-04:09:59,38 workflow INFO:
[Job finished] jobname: datasink jobid: 76
1c1
< hdf5 model-2016-01-09 {
---
> hdf5 mouse00_volcentre_norm_resample_bigaverage_reshape_vol_symm {
66c66
< :ident = "nobody:7e514b8f78db:2016.01.09.08.05.21:4581:1" ;
---
> :ident = "nobody:f957a4516fbc:2016.01.10.04.06.29:4220:1" ;
68c68
< :history = "Sat Jan 9 08:05:21 2016>>> mincaverage -clobber /tmp/volsymm-ZhWtPJhp/FWD-rsmpl.mnc /tmp/volsymm-ZhWtPJhp/FWD-rsmpl.flip.mnc mouse00_volcentre_norm_resample_bigaverage_reshape_vol_symm.mnc\n",
---
> :history = "Sun Jan 10 04:06:29 2016>>> mincaverage -clobber /tmp/volsymm-RZdXLBn2/FWD-rsmpl.mnc /tmp/volsymm-RZdXLBn2/FWD-rsmpl.flip.mnc mouse00_volcentre_norm_resample_bigaverage_reshape_vol_symm.mnc\n",
Binary image comparison:
Images are identical.