Add --seq-types [exon,..] and --use-supplementary options #11
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Signed-off-by: Roel Kluin <[email protected]>
Signed-off-by: Roel Kluin <[email protected]>
Signed-off-by: Roel Kluin <[email protected]>
Rename exon to section, as they may be different as configured on the command line. Includes some rust fmt changes. Signed-off-by: Roel Kluin <[email protected]>
Signed-off-by: Roel Kluin <[email protected]>
Signed-off-by: Roel Kluin <[email protected]>
Signed-off-by: Roel Kluin <[email protected]>
Signed-off-by: Roel Kluin <[email protected]>
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Allow accounting reads overlapping alternate or multiple sequence types than exon.
Checks should prevent specifying all sequence types that overlap one another.
Includes more changes to use clap derive and apply some cargo fmt changes.