Add cobalt CI #8

	# This is a basic workflow to help you get started with Actions

	name: cobalt CI

	# Controls when the workflow will run
	on:
	# Triggers the workflow on push or pull request events but only for the "dev/cefi" branch
	push:
	branches: [ "dev/cefi" ]
	pull_request:
	branches: [ "dev/cefi" ]

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:
	# This workflow contains a single job called "build"
	build:
	# The type of runner that the job will run on
	runs-on: ubuntu-latest
	# define container
	container:
	image: clouden90/1d_mom6_cobalt:base
	options: --user root

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- name: Checkout Repository
	uses: actions/checkout@v3

	# Install wget
	- name: Install wget
	run: \|
	apt update
	apt install -y wget

	# git clone MOM6_OBGC_examples and replace ocean_BGC
	- name: git clone MOM6_OBGC_examples
	run: \|
	cd ..
	git clone https://github.com/NOAA-CEFI-Regional-Ocean-Modeling/MOM6_OBGC_examples.git --recursive
	rm -rf MOM6_OBGC_examples/src/ocean_BGC
	cp -r ocean_BGC MOM6_OBGC_examples/src
	cd MOM6_OBGC_examples/src/ocean_BGC
	git branch
	ls /opt

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