Simplify changes to the generic tracer interface for cobalt-p4: ocean_BGC side #24
Workflow file for this run
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| # This is a basic workflow to help you get started with Actions | |
| name: cobalt CI | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the "dev/cefi" branch | |
| push: | |
| branches: [ "dev/cefi" ] | |
| pull_request: | |
| branches: [ "dev/cefi" ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| build: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # define container | |
| container: | |
| image: clouden90/1d_mom6_cobalt:base | |
| options: --user root | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: Checkout Repository | |
| uses: actions/checkout@v3 | |
| with: | |
| submodules: recursive | |
| # Install wget and get data | |
| - name: Install wget and get data | |
| run: | | |
| apt-get update | |
| apt-get install -y wget | |
| cd /opt | |
| wget https://gfdl-med.s3.amazonaws.com/OceanBGC_dataset/1d_datasets.tar.gz | |
| tar -zxvf 1d_datasets.tar.gz | |
| rm -rf 1d_datasets.tar.gz | |
| # git clone MOM6_OBGC_examples and replace ocean_BGC | |
| - name: git clone MOM6_OBGC_examples and build mom6sis2-cobalt | |
| run: | | |
| cd .. | |
| git clone -b feature/g_tracer https://github.com/NOAA-CEFI-Regional-Ocean-Modeling/MOM6_OBGC_examples.git --recursive | |
| rm -rf MOM6_OBGC_examples/src/ocean_BGC | |
| cp -r ocean_BGC MOM6_OBGC_examples/src | |
| cd MOM6_OBGC_examples/builds | |
| ./linux-build.bash -m docker -p linux-gnu -t prod -f mom6sis2 | |
| # run 1D mom6sis2-cobalt test | |
| - name: 1D mom6sis2-cobalt test | |
| run: | | |
| cd ../MOM6_OBGC_examples/exps | |
| ln -fs /opt/datasets ./ | |
| cd OM4.single_column.COBALT.p4 | |
| mkdir RESTART | |
| mpirun --allow-run-as-root -np 1 ../../builds/build/docker-linux-gnu/ocean_ice/prod/MOM6SIS2 | |
| - name: baseline check | |
| run: | | |
| cd ../MOM6_OBGC_examples/exps/OM4.single_column.COBALT.p4 | |
| mkdir -p ref | |
| cp ../../src/ocean_BGC/.github/ref/OM4.single_column.COBALT.p4/docker-linux-gnu/* ./ref | |
| # check ocean.stats | |
| echo "Check with ref ocean.stats" | |
| diff -q ref/ocean.stats ./ocean.stats > /dev/null || { echo "Error: ocean.stats are different, check and update ref! Exiting now..."; exit 1; } | |
| # check MOM.res.nc | |
| echo "check with ref MOM.res.nc" | |
| ncdump ref/MOM.res.nc > org_ref.txt | |
| ncdump RESTART/MOM.res.nc > new_ref.txt | |
| diff -q ./org_ref.txt ./new_ref.txt > /dev/null || { echo "Error: MOM.res.nc are different, check and update ref! Exiting now..."; exit 1; } | |
| rm org_ref.txt && rm new_ref.txt | |
| # check with ref ocean_cobalt_airsea_flux.res.nc | |
| echo "check with ref ocean_cobalt_airsea_flux.res.nc" | |
| ncdump ref/ocean_cobalt_airsea_flux.res.nc > org_ref.txt | |
| ncdump RESTART/ocean_cobalt_airsea_flux.res.nc > new_ref.txt | |
| diff -q ./org_ref.txt ./new_ref.txt > /dev/null || { echo "Error: ocean_cobalt_airsea_flux.res.nc are different, check and update ref! Exiting now..."; exit 1; } | |
| rm org_ref.txt && rm new_ref.txt | |
| # check with ref ice_cobalt.res.nc | |
| echo "check with ref ice_cobalt.res.nc" | |
| ncdump ref/ice_cobalt.res.nc > org_ref.txt | |
| ncdump RESTART/ice_cobalt.res.nc > new_ref.txt | |
| diff -q ./org_ref.txt ./new_ref.txt > /dev/null || { echo "Error: ice_cobalt.res.nc are different, check and update ref! Exiting now..."; exit 1; } | |
| rm org_ref.txt && rm new_ref.txt | |
| # check with ref ice_model.res.nc | |
| echo "check with ref ice_model.res.nc" | |
| ncdump ref/ice_model.res.nc > org_ref.txt | |
| ncdump RESTART/ice_model.res.nc > new_ref.txt | |
| diff -q ./org_ref.txt ./new_ref.txt > /dev/null || { echo "Error: ice_model.res.nc are different, check and update ref! Exiting now..."; exit 1; } | |
| rm org_ref.txt && rm new_ref.txt |