From cd752ad21cb0bec8b4826ce0ba942506fc20d3b7 Mon Sep 17 00:00:00 2001 From: yuchengt900 Date: Mon, 22 Apr 2024 16:24:17 -0400 Subject: [PATCH 1/6] update NWA12 example, xml, and refactor NWA12-ci --- .../{NWA12-ci.yaml => CEFI_MOM6-ci.yaml} | 34 +- exps/NWA12.COBALT/INPUT/MOM_input | 14 +- exps/NWA12.COBALT/INPUT/MOM_layout_20 | 3 + exps/NWA12.COBALT/INPUT/MOM_layout_25 | 3 + exps/NWA12.COBALT/INPUT/MOM_override | 7 +- exps/NWA12.COBALT/MOM_parameter_doc.all | 2333 ----------------- exps/NWA12.COBALT/MOM_parameter_doc.debugging | 85 - exps/NWA12.COBALT/MOM_parameter_doc.layout | 67 - exps/NWA12.COBALT/MOM_parameter_doc.short | 750 ------ exps/NWA12.COBALT/SIS.available_diags | 426 --- exps/NWA12.COBALT/SIS_fast.available_diags | 57 - exps/NWA12.COBALT/SIS_parameter_doc.all | 560 ---- exps/NWA12.COBALT/SIS_parameter_doc.debugging | 66 - exps/NWA12.COBALT/SIS_parameter_doc.layout | 51 - exps/NWA12.COBALT/SIS_parameter_doc.short | 116 - exps/NWA12.COBALT/diag_table | 1273 --------- exps/NWA12.COBALT/diag_table.org | 1275 +++++++++ exps/NWA12.COBALT/driver.sh | 48 +- xmls/NWA12/CEFI_NWA12_cobalt.xml | 5 +- xmls/NWA12/MOM_inputs/2024_03/MOM_input | 4 +- 20 files changed, 1348 insertions(+), 5829 deletions(-) rename .github/workflows/{NWA12-ci.yaml => CEFI_MOM6-ci.yaml} (76%) create mode 100755 exps/NWA12.COBALT/INPUT/MOM_layout_20 create mode 100755 exps/NWA12.COBALT/INPUT/MOM_layout_25 delete mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.all delete mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.debugging delete mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.layout delete mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.short delete mode 100644 exps/NWA12.COBALT/SIS.available_diags delete mode 100644 exps/NWA12.COBALT/SIS_fast.available_diags delete mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.all delete mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.debugging delete mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.layout delete mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.short create mode 100644 exps/NWA12.COBALT/diag_table.org diff --git a/.github/workflows/NWA12-ci.yaml b/.github/workflows/CEFI_MOM6-ci.yaml similarity index 76% rename from .github/workflows/NWA12-ci.yaml rename to .github/workflows/CEFI_MOM6-ci.yaml index cbda89947..555e0e750 100644 --- a/.github/workflows/NWA12-ci.yaml +++ b/.github/workflows/CEFI_MOM6-ci.yaml @@ -1,7 +1,7 @@ -name: NWA12-ci +name: CEFI-MOM6-ci on: - # Triggers this workflow on pull request event with "NWA12_RT_gaea_c5" label + # Triggers this workflow on pull request event with "CEFI_MOM6_RT_gaea_c5" label pull_request: branches: [ "main" ] types: [ labeled ] @@ -14,7 +14,7 @@ env: # jobs: checkout-build: - if: ${{ github.event.label.name == 'NWA12_RT_gaea_c5' }} + if: ${{ github.event.label.name == 'CEFI_MOM6_RT_gaea_c5' }} runs-on: self-hosted timeout-minutes: 600 strategy: @@ -24,12 +24,12 @@ jobs: - name: Checkout CEFI-regional-MOM6 uses: actions/checkout@v4 with: - path: ${{ github.run_id }}/NWA12_CHECK + path: ${{ github.run_id }}/CEFI_MOM6_CHECK submodules: recursive - name: Build MOM6SIS2 run: | - cd ${{ env.TEST_DIR }}/NWA12_CHECK/builds + cd ${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/builds jobid=$(sbatch --parsable ci_build_driver.sh | awk -F';' '{print $1}' | cut -f1) # sleep 1 @@ -45,7 +45,7 @@ jobs: sleep 60 # Adjust the sleep duration as needed done # - check_file="${{ env.TEST_DIR }}/NWA12_CHECK/builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2" + check_file="${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2" if [ -f "$check_file" ]; then echo "PASSED: $check_file" else @@ -53,17 +53,17 @@ jobs: exit 1 fi - run-NWA12-ci: + run-CEFI_MOM6-ci: needs: checkout-build runs-on: self-hosted strategy: max-parallel: 2 matrix: - case: ["NWA12.CFC"] #, "NWA12.COBALT"] + case: ["NWA12.COBALT"] #, "NWA12.CFC"] steps: - name: Run Experiment ${{ matrix.case }} run: | - cd ${{ env.TEST_DIR }}/NWA12_CHECK/exps/${{ matrix.case }} + cd ${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/exps/${{ matrix.case }} jobid=$(sbatch --parsable driver.sh | awk -F';' '{print $1}' | cut -f1) # sleep 1 @@ -80,7 +80,7 @@ jobs: done # expected_string="All restart files are identical, PASS" - check_file="${{ env.TEST_DIR }}/NWA12_CHECK/exps/${{ matrix.case }}/${{ matrix.case }}_o.$jobid" + check_file="${{ env.TEST_DIR }}/CEFI_MOM6_CHECK/exps/${{ matrix.case }}/${{ matrix.case }}_o.$jobid" if [ -f "$check_file" ]; then if grep -qF "$expected_string" $check_file; then echo "PASSED: ${{ matrix.case }}" @@ -93,21 +93,21 @@ jobs: exit 10 fi - - name: Add "pass_NWA12_RT" label on success - if: success() && contains(github.event.label.name, 'NWA12_RT_gaea_c5') + - name: Add "pass_CEFI_MOM6_RT" label on success + if: success() && contains(github.event.label.name, 'CEFI_MOM6_RT_gaea_c5') run: | TOKEN=${{ secrets.GITHUB_TOKEN }} - RT_TEST_LABEL="NWA12_RT_gaea_c5" - PASS_LABEL="pass_NWA12_RT" + RT_TEST_LABEL="CEFI_MOM6_RT_gaea_c5" + PASS_LABEL="pass_CEFI_MOM6_RT" - # Remove the "NWA12_RT_gaea_c5" label + # Remove the "CEFI_MOM6_RT_gaea_c5" label curl -X DELETE \ -H "Authorization: Bearer $TOKEN" \ -H "Accept: application/vnd.github.v3+json" \ "https://api.github.com/repos/$GITHUB_REPOSITORY/issues/${{ env.PR_NUMBER }}/labels/$RT_TEST_LABEL" - # Add the "pass_NWA12_RT" label + # Add the "pass_CEFI_MOM6_RT" label curl -X POST \ -H "Authorization: Bearer $TOKEN" \ -H "Accept: application/vnd.github.v3+json" \ @@ -115,7 +115,7 @@ jobs: -d "{\"labels\":[\"$PASS_LABEL\"]}" clean-up: - needs: run-NWA12-ci + needs: run-CEFI_MOM6-ci runs-on: self-hosted strategy: max-parallel: 1 diff --git a/exps/NWA12.COBALT/INPUT/MOM_input b/exps/NWA12.COBALT/INPUT/MOM_input index a5201c0a4..4c81d7bcd 100644 --- a/exps/NWA12.COBALT/INPUT/MOM_input +++ b/exps/NWA12.COBALT/INPUT/MOM_input @@ -412,7 +412,7 @@ TIDE_MF = True ! [Boolean] default = False TIDE_MM = True ! [Boolean] default = False ! If true, apply tidal momentum forcing at the MM frequency. This is only used ! if TIDES is true. -TIDE_SAL_SCALAR_VALUE = 0.010 ! [m m-1] +TIDE_SAL_SCALAR_VALUE = 0.01 ! [m m-1] ! The constant of proportionality between sea surface height (really it should ! be bottom pressure) anomalies and bottom geopotential anomalies. This is only ! used if TIDES and TIDE_USE_SAL_SCALAR are true. @@ -430,12 +430,17 @@ MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False ! bathymetry in FV pressure gradient calculations. ! === module MOM_hor_visc === -LAPLACIAN = False +LAPLACIAN = True +KH = 0 +SMAGORINSKY_KH = True +SMAG_LAP_CONST = 0.05 +KH_VEL_SCALE = 0.0 +RESOLN_SCALED_KH = False + BIHARMONIC = True AH = 0.0 AH_VEL_SCALE = 0.010 ! [m s-1] default = 0.0 -SMAGORINSKY_AH = True -SMAG_BI_CONST = 0.015 +SMAGORINSKY_AH = False ! === module MOM_vert_friction === @@ -675,5 +680,6 @@ SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 ! Misc DO_GEOTHERMAL = False EPBL_MLD_BISECTION = True +EPBL_MLD_MAX_ITS = 40 BBL_USE_EOS = True AGGREGATE_FW_FORCING = True diff --git a/exps/NWA12.COBALT/INPUT/MOM_layout_20 b/exps/NWA12.COBALT/INPUT/MOM_layout_20 new file mode 100755 index 000000000..77ead7d7a --- /dev/null +++ b/exps/NWA12.COBALT/INPUT/MOM_layout_20 @@ -0,0 +1,3 @@ +#override IO_LAYOUT = 1,1 +#override LAYOUT = 20,20 +#override MASKTABLE = MOM_mask_table diff --git a/exps/NWA12.COBALT/INPUT/MOM_layout_25 b/exps/NWA12.COBALT/INPUT/MOM_layout_25 new file mode 100755 index 000000000..2ee544c8c --- /dev/null +++ b/exps/NWA12.COBALT/INPUT/MOM_layout_25 @@ -0,0 +1,3 @@ +#override IO_LAYOUT = 1,1 +#override LAYOUT = 25,25 +#override MASKTABLE = MOM_mask_table diff --git a/exps/NWA12.COBALT/INPUT/MOM_override b/exps/NWA12.COBALT/INPUT/MOM_override index b0c6fd7b9..8698bc7e4 100644 --- a/exps/NWA12.COBALT/INPUT/MOM_override +++ b/exps/NWA12.COBALT/INPUT/MOM_override @@ -1,8 +1,13 @@ #override USE_generic_tracer = True #override MAX_FIELDS=500 #override OBC_TIDE_NODAL_REF_DATE = 1993,7,2 -!#override DT_OBC_SEG_UPDATE_OBGC = 3600 +!#override DT_OBC_SEG_UPDATE_OBGC = 1200 #override CHL_FROM_FILE = False #override DO_GEOTHERMAL = True #override GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc" #override EPBL_ANSWER_DATE = 20231231 +#override DT_THERM = 1200.0 +#override DT = 400.0 +#override MLD_ITERATION_GUESS = False +#override REMAP_AUXILIARY_VARS = False +#override EQN_OF_STATE = "WRIGHT_FULL" diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.all b/exps/NWA12.COBALT/MOM_parameter_doc.all deleted file mode 100644 index 74d8ec9ca..000000000 --- a/exps/NWA12.COBALT/MOM_parameter_doc.all +++ /dev/null @@ -1,2333 +0,0 @@ -! This file was written by the model and records all non-layout or debugging parameters used at run-time. - -! === module MOM === -SPLIT = True ! [Boolean] default = True - ! Use the split time stepping if true. -SPLIT_RK2B = False ! [Boolean] default = False - ! If true, use a version of the split explicit time stepping scheme that - ! exchanges velocities with step_MOM that have the average barotropic phase over - ! a baroclinic timestep rather than the instantaneous barotropic phase. -CALC_RHO_FOR_SEA_LEVEL = False ! [Boolean] default = False - ! If true, the in-situ density is used to calculate the effective sea level that - ! is returned to the coupler. If false, the Boussinesq parameter RHO_0 is used. -ENABLE_THERMODYNAMICS = True ! [Boolean] default = True - ! If true, Temperature and salinity are used as state variables. -USE_EOS = True ! [Boolean] default = True - ! If true, density is calculated from temperature and salinity with an equation - ! of state. If USE_EOS is true, ENABLE_THERMODYNAMICS must be true as well. -DIABATIC_FIRST = True ! [Boolean] default = False - ! If true, apply diabatic and thermodynamic processes, including buoyancy - ! forcing and mass gain or loss, before stepping the dynamics forward. -USE_CONTEMP_ABSSAL = False ! [Boolean] default = False - ! If true, the prognostics T&S are the conservative temperature and absolute - ! salinity. Care should be taken to convert them to potential temperature and - ! practical salinity before exchanging them with the coupler and/or reporting - ! T&S diagnostics. -ADIABATIC = False ! [Boolean] default = False - ! There are no diapycnal mass fluxes if ADIABATIC is true. This assumes that KD - ! = 0.0 and that there is no buoyancy forcing, but makes the model faster by - ! eliminating subroutine calls. -DO_DYNAMICS = True ! [Boolean] default = True - ! If False, skips the dynamics calls that update u & v, as well as the gravity - ! wave adjustment to h. This may be a fragile feature, but can be useful during - ! development -OFFLINE_TRACER_MODE = False ! [Boolean] default = False - ! If true, barotropic and baroclinic dynamics, thermodynamics are all bypassed - ! with all the fields necessary to integrate the tracer advection and diffusion - ! equation are read in from files stored from a previous integration of the - ! prognostic model. NOTE: This option only used in the ocean_solo_driver. -USE_REGRIDDING = True ! [Boolean] default = False - ! If True, use the ALE algorithm (regridding/remapping). If False, use the - ! layered isopycnal algorithm. -REMAP_UV_USING_OLD_ALG = False ! [Boolean] default = False - ! If true, uses the old remapping-via-a-delta-z method for remapping u and v. If - ! false, uses the new method that remaps between grids described by an old and - ! new thickness. -REMAP_AUXILIARY_VARS = False ! [Boolean] default = False - ! If true, apply ALE remapping to all of the auxiliary 3-dimensional variables - ! that are needed to reproduce across restarts, similarly to what is already - ! being done with the primary state variables. The default should be changed to - ! true. -BULKMIXEDLAYER = False ! [Boolean] default = False - ! If true, use a Kraus-Turner-like bulk mixed layer with transitional buffer - ! layers. Layers 1 through NKML+NKBL have variable densities. There must be at - ! least NKML+NKBL+1 layers if BULKMIXEDLAYER is true. BULKMIXEDLAYER can not be - ! used with USE_REGRIDDING. The default is influenced by ENABLE_THERMODYNAMICS. -THICKNESSDIFFUSE = False ! [Boolean] default = False - ! If true, isopycnal surfaces are diffused with a Laplacian coefficient of KHTH. -APPLY_INTERFACE_FILTER = False ! [Boolean] default = False - ! If true, model interface heights are subjected to a grid-scale dependent - ! spatial smoothing, often with biharmonic filter. -USE_POROUS_BARRIER = True ! [Boolean] default = True - ! If true, use porous barrier to constrain the widths and face areas at the - ! edges of the grid cells. -BATHYMETRY_AT_VEL = False ! [Boolean] default = False - ! If true, there are separate values for the basin depths at velocity points. - ! Otherwise the effects of topography are entirely determined from thickness - ! points. -DT = 600.0 ! [s] - ! The (baroclinic) dynamics time step. The time-step that is actually used will - ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode - ! or the coupling timestep in coupled mode.) -DT_THERM = 1800.0 ! [s] default = 600.0 - ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be - ! an integer multiple of DT and less than the forcing or coupling time-step, - ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer - ! multiple of the coupling timestep. By default DT_THERM is set to DT. -THERMO_SPANS_COUPLING = False ! [Boolean] default = False - ! If true, the MOM will take thermodynamic and tracer timesteps that can be - ! longer than the coupling timestep. The actual thermodynamic timestep that is - ! used in this case is the largest integer multiple of the coupling timestep - ! that is less than or equal to DT_THERM. -HMIX_SFC_PROP = 1.0 ! [m] default = 1.0 - ! If BULKMIXEDLAYER is false, HMIX_SFC_PROP is the depth over which to average - ! to find surface properties like SST and SSS or density (but not surface - ! velocities). -HMIX_UV_SFC_PROP = 0.0 ! [m] default = 0.0 - ! If BULKMIXEDLAYER is false, HMIX_UV_SFC_PROP is the depth over which to - ! average to find surface flow properties, SSU, SSV. A non-positive value - ! indicates no averaging. -HFREEZE = -1.0 ! [m] default = -1.0 - ! If HFREEZE > 0, melt potential will be computed. The actual depth over which - ! melt potential is computed will be min(HFREEZE, OBLD), where OBLD is the - ! boundary layer depth. If HFREEZE <= 0 (default), melt potential will not be - ! computed. -INTERPOLATE_P_SURF = False ! [Boolean] default = False - ! If true, linearly interpolate the surface pressure over the coupling time - ! step, using the specified value at the end of the step. -DTBT_RESET_PERIOD = 1800.0 ! [s] default = 1800.0 - ! The period between recalculations of DTBT (if DTBT <= 0). If DTBT_RESET_PERIOD - ! is negative, DTBT is set based only on information available at - ! initialization. If 0, DTBT will be set every dynamics time step. The default - ! is set by DT_THERM. This is only used if SPLIT is true. -FRAZIL = True ! [Boolean] default = False - ! If true, water freezes if it gets too cold, and the accumulated heat deficit - ! is returned in the surface state. FRAZIL is only used if - ! ENABLE_THERMODYNAMICS is true. -DO_GEOTHERMAL = True ! [Boolean] default = False - ! If true, apply geothermal heating. -BOUND_SALINITY = True ! [Boolean] default = False - ! If true, limit salinity to being positive. (The sea-ice model may ask for more - ! salt than is available and drive the salinity negative otherwise.) -MIN_SALINITY = 0.0 ! [PPT] default = 0.0 - ! The minimum value of salinity when BOUND_SALINITY=True. -SALINITY_UNDERFLOW = 0.0 ! [PPT] default = 0.0 - ! A tiny value of salinity below which the it is set to 0. For reference, one - ! molecule of salt per square meter of ocean is of order 1e-29 ppt. -TEMPERATURE_UNDERFLOW = 0.0 ! [degC] default = 0.0 - ! A tiny magnitude of temperatures below which they are set to 0. -C_P = 3992.0 ! [J kg-1 K-1] default = 3991.86795711963 - ! The heat capacity of sea water, approximated as a constant. This is only used - ! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10 - ! definition of conservative temperature. -USE_PSURF_IN_EOS = True ! [Boolean] default = True - ! If true, always include the surface pressure contributions in equation of - ! state calculations. -P_REF = 2.0E+07 ! [Pa] default = 2.0E+07 - ! The pressure that is used for calculating the coordinate density. (1 Pa = 1e4 - ! dbar, so 2e7 is commonly used.) This is only used if USE_EOS and - ! ENABLE_THERMODYNAMICS are true. -FIRST_DIRECTION = 0 ! default = 0 - ! An integer that indicates which direction goes first in parts of the code that - ! use directionally split updates, with even numbers (or 0) used for x- first - ! and odd numbers used for y-first. -ALTERNATE_FIRST_DIRECTION = False ! [Boolean] default = False - ! If true, after every dynamic timestep alternate whether the x- or y- direction - ! updates occur first in directionally split parts of the calculation. If this - ! is true, FIRST_DIRECTION applies at the start of a new run or if the next - ! first direction can not be found in the restart file. -CHECK_BAD_SURFACE_VALS = False ! [Boolean] default = False - ! If true, check the surface state for ridiculous values. -DEFAULT_ANSWER_DATE = 99991231 ! default = 99991231 - ! This sets the default value for the various _ANSWER_DATE parameters. -SURFACE_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the expressions for the surface properties. Values below - ! 20190101 recover the answers from the end of 2018, while higher values use - ! updated and more robust forms of the same expressions. -USE_DIABATIC_TIME_BUG = False ! [Boolean] default = False - ! If true, uses the wrong calendar time for diabatic processes, as was done in - ! MOM6 versions prior to February 2018. This is not recommended. -SAVE_INITIAL_CONDS = False ! [Boolean] default = False - ! If true, write the initial conditions to a file given by IC_OUTPUT_FILE. -IC_OUTPUT_FILE = "MOM_IC" ! default = "MOM_IC" - ! The file into which to write the initial conditions. -WRITE_GEOM = 0 ! default = 1 - ! If =0, never write the geometry and vertical grid files. If =1, write the - ! geometry and vertical grid files only for a new simulation. If =2, always - ! write the geometry and vertical grid files. Other values are invalid. -USE_DBCLIENT = False ! [Boolean] default = False - ! If true, initialize a client to a remote database that can be used for online - ! analysis and machine-learning inference. -ICE_SHELF = False ! [Boolean] default = False - ! If true, enables the ice shelf model. -USE_PARTICLES = False ! [Boolean] default = False - ! If true, use the particles package. -USE_UH_PARTICLES = False ! [Boolean] default = False - ! If true, use the uh velocity in the particles package. -ENSEMBLE_OCEAN = False ! [Boolean] default = False - ! If False, The model is being run in serial mode as a single realization. If - ! True, The current model realization is part of a larger ensemble and at the - ! end of step MOM, we will perform a gather of the ensemble members for - ! statistical evaluation and/or data assimilation. -HOMOGENIZE_FORCINGS = False ! [Boolean] default = False - ! If True, homogenize the forces and fluxes. - -! === module MOM_domains === -REENTRANT_X = False ! [Boolean] default = True - ! If true, the domain is zonally reentrant. -REENTRANT_Y = False ! [Boolean] default = False - ! If true, the domain is meridionally reentrant. -TRIPOLAR_N = False ! [Boolean] default = False - ! Use tripolar connectivity at the northern edge of the domain. With - ! TRIPOLAR_N, NIGLOBAL must be even. -NIGLOBAL = 775 ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NJGLOBAL = 845 ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NIHALO = 4 ! default = 4 - ! The number of halo points on each side in the x-direction. How this is set - ! varies with the calling component and static or dynamic memory configuration. -NJHALO = 4 ! default = 4 - ! The number of halo points on each side in the y-direction. How this is set - ! varies with the calling component and static or dynamic memory configuration. - -! === module MOM_hor_index === -! Sets the horizontal array index types. - -! === module MOM_grid === -! Parameters providing information about the lateral grid. -REFERENCE_HEIGHT = 0.0 ! [m] default = 0.0 - ! A reference value for geometric height fields, such as bathyT. - -! === module MOM_fixed_initialization === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = False - ! If true, use older code that incorrectly sets the longitude in some points - ! along the tripolar fold to be off by 360 degrees. -RAD_EARTH = 6.378E+06 ! [m] default = 6.378E+06 - ! The radius of the Earth. -TOPO_CONFIG = "file" ! - ! This specifies how bathymetry is specified: - ! file - read bathymetric information from the file - ! specified by (TOPO_FILE). - ! flat - flat bottom set to MAXIMUM_DEPTH. - ! bowl - an analytically specified bowl-shaped basin - ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. - ! spoon - a similar shape to 'bowl', but with an vertical - ! wall at the southern face. - ! halfpipe - a zonally uniform channel with a half-sine - ! profile in the meridional direction. - ! bbuilder - build topography from list of functions. - ! benchmark - use the benchmark test case topography. - ! Neverworld - use the Neverworld test case topography. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a slope and channel configuration for the - ! ISOMIP test case. - ! DOME2D - use a shelf and slope configuration for the - ! DOME2D gravity current/overflow test case. - ! Kelvin - flat but with rotated land mask. - ! seamount - Gaussian bump for spontaneous motion test case. - ! dumbbell - Sloshing channel with reservoirs on both ends. - ! shelfwave - exponential slope for shelfwave test case. - ! Phillips - ACC-like idealized topography used in the Phillips config. - ! dense - Denmark Strait-like dense water formation and overflow. - ! USER - call a user modified routine. -TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" - ! The file from which the bathymetry is read. -TOPO_VARNAME = "depth" ! default = "depth" - ! The name of the bathymetry variable in TOPO_FILE. -TOPO_EDITS_FILE = "" ! default = "" - ! The file from which to read a list of i,j,z topography overrides. -ALLOW_LANDMASK_CHANGES = False ! [Boolean] default = False - ! If true, allow topography overrides to change land mask. -MINIMUM_DEPTH = 4.0 ! [m] default = 0.0 - ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is - ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is - ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than - ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. -MASKING_DEPTH = 1.0 ! [m] default = -9999.0 - ! The depth below which to mask points as land points, for which all fluxes are - ! zeroed out. MASKING_DEPTH is ignored if it has the special default value. -MAXIMUM_DEPTH = 6500.0 ! [m] - ! The maximum depth of the ocean. - -! === module MOM_open_boundary === -! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, -! if any. -OBC_NUMBER_OF_SEGMENTS = 3 ! default = 0 - ! The number of open boundary segments. -OBC_ZERO_VORTICITY = False ! [Boolean] default = False - ! If true, sets relative vorticity to zero on open boundaries. -OBC_FREESLIP_VORTICITY = False ! [Boolean] default = True - ! If true, sets the normal gradient of tangential velocity to zero in the - ! relative vorticity on open boundaries. This cannot be true if another - ! OBC_XXX_VORTICITY option is True. -OBC_COMPUTED_VORTICITY = True ! [Boolean] default = False - ! If true, uses the external values of tangential velocity in the relative - ! vorticity on open boundaries. This cannot be true if another OBC_XXX_VORTICITY - ! option is True. -OBC_SPECIFIED_VORTICITY = False ! [Boolean] default = False - ! If true, uses the external values of tangential velocity in the relative - ! vorticity on open boundaries. This cannot be true if another OBC_XXX_VORTICITY - ! option is True. -OBC_ZERO_STRAIN = False ! [Boolean] default = False - ! If true, sets the strain used in the stress tensor to zero on open boundaries. -OBC_FREESLIP_STRAIN = False ! [Boolean] default = True - ! If true, sets the normal gradient of tangential velocity to zero in the strain - ! use in the stress tensor on open boundaries. This cannot be true if another - ! OBC_XXX_STRAIN option is True. -OBC_COMPUTED_STRAIN = True ! [Boolean] default = False - ! If true, sets the normal gradient of tangential velocity to zero in the strain - ! use in the stress tensor on open boundaries. This cannot be true if another - ! OBC_XXX_STRAIN option is True. -OBC_SPECIFIED_STRAIN = False ! [Boolean] default = False - ! If true, sets the normal gradient of tangential velocity to zero in the strain - ! use in the stress tensor on open boundaries. This cannot be true if another - ! OBC_XXX_STRAIN option is True. -OBC_ZERO_BIHARMONIC = True ! [Boolean] default = False - ! If true, zeros the Laplacian of flow on open boundaries in the biharmonic - ! viscosity term. -MASK_OUTSIDE_OBCS = False ! [Boolean] default = False - ! If true, set the areas outside open boundaries to be land. -RAMP_OBCS = False ! [Boolean] default = False - ! If true, ramps from zero to the external values over time, witha ramping - ! timescale given by RAMP_TIMESCALE. Ramping SSH only so far -OBC_RAMP_TIMESCALE = 2.0 ! [days] default = 1.0 - ! If RAMP_OBCS is true, this sets the ramping timescale. -OBC_TIDE_N_CONSTITUENTS = 10 ! default = 0 - ! Number of tidal constituents being added to the open boundary. -OBC_SEGMENT_001 = "J=0,I=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! - ! Documentation needs to be dynamic????? -OBC_SEGMENT_001_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 - ! Timescales in days for nudging along a segment, for inflow, then outflow. - ! Setting both to zero should behave like SIMPLE obcs for the baroclinic - ! velocities. -OBC_SEGMENT_002 = "J=N,I=N:0,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! - ! Documentation needs to be dynamic????? -OBC_SEGMENT_002_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 - ! Timescales in days for nudging along a segment, for inflow, then outflow. - ! Setting both to zero should behave like SIMPLE obcs for the baroclinic - ! velocities. -OBC_SEGMENT_003 = "I=N,J=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! - ! Documentation needs to be dynamic????? -OBC_SEGMENT_003_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 - ! Timescales in days for nudging along a segment, for inflow, then outflow. - ! Setting both to zero should behave like SIMPLE obcs for the baroclinic - ! velocities. -OBC_RADIATION_MAX = 1.0 ! [nondim] default = 1.0 - ! The maximum magnitude of the baroclinic radiation velocity (or speed of - ! characteristics), in gridpoints per timestep. This is only used if one of the - ! open boundary segments is using Orlanski. -OBC_RAD_VEL_WT = 0.3 ! [nondim] default = 0.3 - ! The relative weighting for the baroclinic radiation velocities (or speed of - ! characteristics) at the new time level (1) or the running mean (0) for - ! velocities. Valid values range from 0 to 1. This is only used if one of the - ! open boundary segments is using Orlanski. -OBC_TRACER_RESERVOIR_LENGTH_SCALE_OUT = 9000.0 ! [m] default = 0.0 - ! An effective length scale for restoring the tracer concentration at the - ! boundaries to externally imposed values when the flow is exiting the domain. -OBC_TRACER_RESERVOIR_LENGTH_SCALE_IN = 9000.0 ! [m] default = 0.0 - ! An effective length scale for restoring the tracer concentration at the - ! boundaries to values from the interior when the flow is entering the domain. -BRUSHCUTTER_MODE = True ! [Boolean] default = False - ! If true, read external OBC data on the supergrid. -REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the expressions and order of arithmetic to use for remapping. - ! Values below 20190101 result in the use of older, less accurate expressions - ! that were in use at the end of 2018. Higher values result in the use of more - ! robust and accurate forms of mathematically equivalent expressions. -OBC_TIDE_CONSTITUENTS = "M2,S2,N2,K2,K1,O1,P1,Q1,MM,MF" ! - ! Names of tidal constituents being added to the open boundaries. -OBC_TIDE_ADD_EQ_PHASE = True ! [Boolean] default = False - ! If true, add the equilibrium phase argument to the specified tidal phases. -OBC_TIDE_ADD_NODAL = True ! [Boolean] default = False - ! If true, include 18.6 year nodal modulation in the boundary tidal forcing. -OBC_TIDE_REF_DATE = 1993, 1, 1 ! - ! Reference date to use for tidal calculations and equilibrium phase. -OBC_TIDE_NODAL_REF_DATE = 1993, 7, 2 ! default = 0 - ! Fixed reference date to use for nodal modulation of boundary tides. -TIDE_M2_FREQ = 1.405189E-04 ! [s-1] default = 1.405189E-04 - ! Frequency of the M2 tidal constituent. This is only used if TIDES and TIDE_M2 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and M2 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_S2_FREQ = 1.454441E-04 ! [s-1] default = 1.454441E-04 - ! Frequency of the S2 tidal constituent. This is only used if TIDES and TIDE_S2 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and S2 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_N2_FREQ = 1.378797E-04 ! [s-1] default = 1.378797E-04 - ! Frequency of the N2 tidal constituent. This is only used if TIDES and TIDE_N2 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and N2 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_K2_FREQ = 1.4584234E-04 ! [s-1] default = 1.4584234E-04 - ! Frequency of the K2 tidal constituent. This is only used if TIDES and TIDE_K2 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and K2 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_K1_FREQ = 7.292117E-05 ! [s-1] default = 7.292117E-05 - ! Frequency of the K1 tidal constituent. This is only used if TIDES and TIDE_K1 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and K1 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_O1_FREQ = 6.759774E-05 ! [s-1] default = 6.759774E-05 - ! Frequency of the O1 tidal constituent. This is only used if TIDES and TIDE_O1 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and O1 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_P1_FREQ = 7.252295E-05 ! [s-1] default = 7.252295E-05 - ! Frequency of the P1 tidal constituent. This is only used if TIDES and TIDE_P1 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and P1 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_Q1_FREQ = 6.495854E-05 ! [s-1] default = 6.495854E-05 - ! Frequency of the Q1 tidal constituent. This is only used if TIDES and TIDE_Q1 - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and Q1 is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_MM_FREQ = 2.6392E-06 ! [s-1] default = 2.6392E-06 - ! Frequency of the MM tidal constituent. This is only used if TIDES and TIDE_MM - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and MM is in - ! OBC_TIDE_CONSTITUENTS. -TIDE_MF_FREQ = 5.3234E-06 ! [s-1] default = 5.3234E-06 - ! Frequency of the MF tidal constituent. This is only used if TIDES and TIDE_MF - ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and MF is in - ! OBC_TIDE_CONSTITUENTS. -CHANNEL_CONFIG = "none" ! default = "none" - ! A parameter that determines which set of channels are - ! restricted to specific widths. Options are: - ! none - All channels have the grid width. - ! global_1deg - Sets 16 specific channels appropriate - ! for a 1-degree model, as used in CM2G. - ! list - Read the channel locations and widths from a - ! text file, like MOM_channel_list in the MOM_SIS - ! test case. - ! file - Read open face widths everywhere from a - ! NetCDF file on the model grid. -SUBGRID_TOPO_AT_VEL = False ! [Boolean] default = False - ! If true, use variables from TOPO_AT_VEL_FILE as parameters for porous barrier. -ROTATION = "2omegasinlat" ! default = "2omegasinlat" - ! This specifies how the Coriolis parameter is specified: - ! 2omegasinlat - Use twice the planetary rotation rate - ! times the sine of latitude. - ! betaplane - Use a beta-plane or f-plane. - ! USER - call a user modified routine. -OMEGA = 7.2921E-05 ! [s-1] default = 7.2921E-05 - ! The rotation rate of the earth. -GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = False - ! If true, use an older algorithm to calculate the sine and cosines needed - ! rotate between grid-oriented directions and true north and east. Differences - ! arise at the tripolar fold. - -! === module MOM_verticalGrid === -! Parameters providing information about the vertical grid. -G_EARTH = 9.8 ! [m s-2] default = 9.8 - ! The gravitational acceleration of the Earth. -RHO_0 = 1035.0 ! [kg m-3] default = 1035.0 - ! The mean ocean density used with BOUSSINESQ true to calculate accelerations - ! and the mass for conservation properties, or with BOUSSINSEQ false to convert - ! some parameters from vertical units of m to kg m-2. -BOUSSINESQ = True ! [Boolean] default = True - ! If true, make the Boussinesq approximation. -ANGSTROM = 1.0E-10 ! [m] default = 1.0E-10 - ! The minimum layer thickness, usually one-Angstrom. -H_TO_M = 1.0 ! [m H-1] default = 1.0 - ! A constant that translates the model's internal units of thickness into m. -NK = 75 ! [nondim] - ! The number of model layers. - -! === module MOM_tracer_registry === - -! === module MOM_EOS === -EQN_OF_STATE = "WRIGHT" ! default = "WRIGHT" - ! EQN_OF_STATE determines which ocean equation of state should be used. - ! Currently, the valid choices are "LINEAR", "UNESCO", "JACKETT_MCD", "WRIGHT", - ! "WRIGHT_REDUCED", "WRIGHT_FULL", "NEMO", "ROQUET_RHO", "ROQUET_SPV" and - ! "TEOS10". This is only used if USE_EOS is true. -USE_WRIGHT_2ND_DERIV_BUG = False ! [Boolean] default = False - ! If true, use a bug in the calculation of the second derivatives of density - ! with temperature and with temperature and pressure that causes some terms to - ! be only 2/3 of what they should be. -EOS_QUADRATURE = False ! [Boolean] default = False - ! If true, always use the generic (quadrature) code code for the integrals of - ! density. -TFREEZE_FORM = "LINEAR" ! default = "LINEAR" - ! TFREEZE_FORM determines which expression should be used for the freezing - ! point. Currently, the valid choices are "LINEAR", "MILLERO_78", "TEOS_POLY", - ! "TEOS10" -TFREEZE_S0_P0 = 0.0 ! [degC] default = 0.0 - ! When TFREEZE_FORM=LINEAR, this is the freezing potential temperature at S=0, - ! P=0. -DTFREEZE_DS = -0.054 ! [degC ppt-1] default = -0.054 - ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential - ! temperature with salinity. -DTFREEZE_DP = -7.75E-08 ! [degC Pa-1] default = 0.0 - ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential - ! temperature with pressure. - -! === module MOM_restart === -PARALLEL_RESTARTFILES = False ! [Boolean] default = False - ! If true, the IO layout is used to group processors that write to the same - ! restart file or each processor writes its own (numbered) restart file. If - ! false, a single restart file is generated combining output from all PEs. -RESTARTFILE = "MOM.res" ! default = "MOM.res" - ! The name-root of the restart file. -MAX_FIELDS = 500 ! default = 100 - ! The maximum number of restart fields that can be used. -RESTART_CHECKSUMS_REQUIRED = True ! [Boolean] default = True - ! If true, require the restart checksums to match and error out otherwise. Users - ! may want to avoid this comparison if for example the restarts are made from a - ! run with a different mask_table than the current run, in which case the - ! checksums will not match and cause crash. - -! === module MOM_tracer_flow_control === -USE_USER_TRACER_EXAMPLE = False ! [Boolean] default = False - ! If true, use the USER_tracer_example tracer package. -USE_DOME_TRACER = False ! [Boolean] default = False - ! If true, use the DOME_tracer tracer package. -USE_ISOMIP_TRACER = False ! [Boolean] default = False - ! If true, use the ISOMIP_tracer tracer package. -USE_RGC_TRACER = False ! [Boolean] default = False - ! If true, use the RGC_tracer tracer package. -USE_IDEAL_AGE_TRACER = False ! [Boolean] default = False - ! If true, use the ideal_age_example tracer package. -USE_REGIONAL_DYES = False ! [Boolean] default = False - ! If true, use the regional_dyes tracer package. -USE_OIL_TRACER = False ! [Boolean] default = False - ! If true, use the oil_tracer tracer package. -USE_ADVECTION_TEST_TRACER = False ! [Boolean] default = False - ! If true, use the advection_test_tracer tracer package. -USE_OCMIP2_CFC = False ! [Boolean] default = False - ! If true, use the MOM_OCMIP2_CFC tracer package. -USE_CFC_CAP = False ! [Boolean] default = False - ! If true, use the MOM_CFC_cap tracer package. -USE_generic_tracer = True ! [Boolean] default = False - ! If true and _USE_GENERIC_TRACER is defined as a preprocessor macro, use the - ! MOM_generic_tracer packages. -USE_PSEUDO_SALT_TRACER = False ! [Boolean] default = False - ! If true, use the pseudo salt tracer, typically run as a diagnostic. -USE_BOUNDARY_IMPULSE_TRACER = False ! [Boolean] default = False - ! If true, use the boundary impulse tracer. -USE_DYED_OBC_TRACER = False ! [Boolean] default = False - ! If true, use the dyed_obc_tracer tracer package. -USE_NW2_TRACERS = False ! [Boolean] default = False - ! If true, use the NeverWorld2 tracers. - -! === module register_MOM_generic_tracer === -GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc" ! default = "" - ! The file in which the generic trcer initial values can be found, or an empty - ! string for internal initialization. -GENERIC_TRACER_IC_FILE_IS_Z = False ! [Boolean] default = False - ! If true, GENERIC_TRACER_IC_FILE is in depth space, not layer space. -TRACERS_MAY_REINIT = False ! [Boolean] default = False - ! If true, tracers may go through the initialization code if they are not found - ! in the restart files. Otherwise it is a fatal error if tracers are not found - ! in the restart files of a restarted run. - -! === module MOM_boundary_update === -USE_FILE_OBC = False ! [Boolean] default = False - ! If true, use external files for the open boundary. -USE_TIDAL_BAY_OBC = False ! [Boolean] default = False - ! If true, use the tidal_bay open boundary. -USE_KELVIN_WAVE_OBC = False ! [Boolean] default = False - ! If true, use the Kelvin wave open boundary. -USE_SHELFWAVE_OBC = False ! [Boolean] default = False - ! If true, use the shelfwave open boundary. -USE_DYED_CHANNEL_OBC = False ! [Boolean] default = False - ! If true, use the dyed channel open boundary. - -! === module segment_tracer_registry_init === - -! === module MOM_coord_initialization === -COORD_CONFIG = "ALE" ! default = "none" - ! This specifies how layers are to be defined: - ! ALE or none - used to avoid defining layers in ALE mode - ! file - read coordinate information from the file - ! specified by (COORD_FILE). - ! BFB - Custom coords for buoyancy-forced basin case - ! based on SST_S, T_BOT and DRHO_DT. - ! linear - linear based on interfaces not layers - ! layer_ref - linear based on layer densities - ! ts_ref - use reference temperature and salinity - ! ts_range - use range of temperature and salinity - ! (T_REF and S_REF) to determine surface density - ! and GINT calculate internal densities. - ! gprime - use reference density (RHO_0) for surface - ! density and GINT calculate internal densities. - ! ts_profile - use temperature and salinity profiles - ! (read from COORD_FILE) to set layer densities. - ! USER - call a user modified routine. -GFS = 9.8 ! [m s-2] default = 9.8 - ! The reduced gravity at the free surface. -LIGHTEST_DENSITY = 1035.0 ! [kg m-3] default = 1035.0 - ! The reference potential density used for layer 1. -REGRIDDING_COORDINATE_MODE = "Z*" ! default = "LAYER" - ! Coordinate mode for vertical regridding. Choose among the following - ! possibilities: LAYER - Isopycnal or stacked shallow water layers - ! ZSTAR, Z* - stretched geopotential z* - ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf - ! SIGMA - terrain following coordinates - ! RHO - continuous isopycnal - ! HYCOM1 - HyCOM-like hybrid coordinate - ! HYBGEN - Hybrid coordinate from the Hycom hybgen code - ! ADAPTIVE - optimize for smooth neutral density surfaces -REGRIDDING_COORDINATE_UNITS = "m" ! default = "m" - ! Units of the regridding coordinate. -ALE_COORDINATE_CONFIG = "FILE:vgrid_75_2m.nc,dz" ! default = "UNIFORM" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter ALE_RESOLUTION - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz -!ALE_RESOLUTION = 4*2.0, 2*2.01, 2.02, 2.03, 2.05, 2.08, 2.11, 2.15, 2.2, 2.27, 2.34, 2.44, 2.55, 2.69, 2.85, 3.04, 3.27, 3.54, 3.85, 4.22, 4.66, 5.18, 5.79, 6.52, 7.37, 8.37, 9.55, 10.94, 12.57, 14.48, 16.72, 19.33, 22.36, 25.87, 29.91, 34.53, 39.79, 45.72, 52.37, 59.76, 67.89, 76.74, 86.29, 96.47, 107.2, 118.35, 129.81, 141.42, 153.01, 164.41, 175.47, 186.01, 195.9, 205.01, 213.27, 220.6, 226.99, 232.43, 236.96, 240.63, 243.52, 245.72, 247.33, 248.45, 249.18, 249.62, 249.86, 249.96, 249.99, 2*250.0 ! [m] - ! The distribution of vertical resolution for the target - ! grid used for Eulerian-like coordinates. For example, - ! in z-coordinate mode, the parameter is a list of level - ! thicknesses (in m). In sigma-coordinate mode, the list - ! is of non-dimensional fractions of the water column. -MIN_THICKNESS = 1.0E-06 ! [m] default = 0.001 - ! When regridding, this is the minimum layer thickness allowed. -REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" - ! This sets the reconstruction scheme used for vertical remapping for all - ! variables. It can be one of the following schemes: - ! PCM (1st-order accurate) - ! PLM (2nd-order accurate) - ! PLM_HYBGEN (2nd-order accurate) - ! PPM_H4 (3rd-order accurate) - ! PPM_IH4 (3rd-order accurate) - ! PPM_HYBGEN (3rd-order accurate) - ! WENO_HYBGEN (3rd-order accurate) - ! PQM_IH4IH3 (4th-order accurate) - ! PQM_IH6IH5 (5th-order accurate) -VELOCITY_REMAPPING_SCHEME = "PPM_H4" ! default = "PPM_H4" - ! This sets the reconstruction scheme used for vertical remapping of velocities. - ! By default it is the same as REMAPPING_SCHEME. It can be one of the following - ! schemes: - ! PCM (1st-order accurate) - ! PLM (2nd-order accurate) - ! PLM_HYBGEN (2nd-order accurate) - ! PPM_H4 (3rd-order accurate) - ! PPM_IH4 (3rd-order accurate) - ! PPM_HYBGEN (3rd-order accurate) - ! WENO_HYBGEN (3rd-order accurate) - ! PQM_IH4IH3 (4th-order accurate) - ! PQM_IH6IH5 (5th-order accurate) -FATAL_CHECK_RECONSTRUCTIONS = False ! [Boolean] default = False - ! If true, cell-by-cell reconstructions are checked for consistency and if - ! non-monotonicity or an inconsistency is detected then a FATAL error is issued. -FATAL_CHECK_REMAPPING = False ! [Boolean] default = False - ! If true, the results of remapping are checked for conservation and new extrema - ! and if an inconsistency is detected then a FATAL error is issued. -REMAP_BOUND_INTERMEDIATE_VALUES = False ! [Boolean] default = False - ! If true, the values on the intermediate grid used for remapping are forced to - ! be bounded, which might not be the case due to round off. -REMAP_BOUNDARY_EXTRAP = False ! [Boolean] default = False - ! If true, values at the interfaces of boundary cells are extrapolated instead - ! of piecewise constant -PARTIAL_CELL_VELOCITY_REMAP = False ! [Boolean] default = False - ! If true, use partial cell thicknesses at velocity points that are masked out - ! where they extend below the shallower of the neighboring bathymetry for - ! remapping velocity. -REMAP_AFTER_INITIALIZATION = True ! [Boolean] default = True - ! If true, applies regridding and remapping immediately after initialization so - ! that the state is ALE consistent. This is a legacy step and should not be - ! needed if the initialization is consistent with the coordinate mode. -REGRID_TIME_SCALE = 0.0 ! [s] default = 0.0 - ! The time-scale used in blending between the current (old) grid and the target - ! (new) grid. A short time-scale favors the target grid (0. or anything less - ! than DT_THERM) has no memory of the old grid. A very long time-scale makes the - ! model more Lagrangian. -REGRID_FILTER_SHALLOW_DEPTH = 0.0 ! [m] default = 0.0 - ! The depth above which no time-filtering is applied. Above this depth final - ! grid exactly matches the target (new) grid. -REGRID_FILTER_DEEP_DEPTH = 0.0 ! [m] default = 0.0 - ! The depth below which full time-filtering is applied with time-scale - ! REGRID_TIME_SCALE. Between depths REGRID_FILTER_SHALLOW_DEPTH and - ! REGRID_FILTER_SHALLOW_DEPTH the filter weights adopt a cubic profile. -REMAP_VEL_MASK_BBL_THICK = -0.001 ! [m] default = -0.001 - ! A thickness of a bottom boundary layer below which velocities in thin layers - ! are zeroed out after remapping, following practice with Hybgen remapping, or a - ! negative value to avoid such filtering altogether. - -! === module MOM_state_initialization === -FATAL_INCONSISTENT_RESTART_TIME = False ! [Boolean] default = False - ! If true and a time_in value is provided to MOM_initialize_state, verify that - ! the time read from a restart file is the same as time_in, and issue a fatal - ! error if it is not. Otherwise, simply set the time to time_in if present. -INIT_LAYERS_FROM_Z_FILE = False ! [Boolean] default = False - ! If true, initialize the layer thicknesses, temperatures, and salinities from a - ! Z-space file on a latitude-longitude grid. -THICKNESS_CONFIG = "coord" ! default = "uniform" - ! A string that determines how the initial layer thicknesses are specified for a - ! new run: - ! file - read interface heights from the file specified - ! by (THICKNESS_FILE). - ! thickness_file - read thicknesses from the file specified - ! by (THICKNESS_FILE). - ! mass_file - read thicknesses in units of mass per unit area from the file - ! specified by (THICKNESS_FILE). - ! coord - determined by ALE coordinate. - ! uniform - uniform thickness layers evenly distributed - ! between the surface and MAXIMUM_DEPTH. - ! list - read a list of positive interface depths. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a configuration for the - ! ISOMIP test case. - ! benchmark - use the benchmark test case thicknesses. - ! Neverworld - use the Neverworld test case thicknesses. - ! search - search a density profile for the interface - ! densities. This is not yet implemented. - ! circle_obcs - the circle_obcs test case is used. - ! DOME2D - 2D version of DOME initialization. - ! adjustment2d - 2D lock exchange thickness ICs. - ! sloshing - sloshing gravity thickness ICs. - ! seamount - no motion test with seamount ICs. - ! dumbbell - sloshing channel ICs. - ! soliton - Equatorial Rossby soliton. - ! rossby_front - a mixed layer front in thermal wind balance. - ! USER - call a user modified routine. -TS_CONFIG = "file" ! - ! A string that determines how the initial temperatures and salinities are - ! specified for a new run: - ! file - read velocities from the file specified - ! by (TS_FILE). - ! fit - find the temperatures that are consistent with - ! the layer densities and salinity S_REF. - ! TS_profile - use temperature and salinity profiles - ! (read from TS_FILE) to set layer densities. - ! benchmark - use the benchmark test case T & S. - ! linear - linear in logical layer space. - ! DOME2D - 2D DOME initialization. - ! ISOMIP - ISOMIP initialization. - ! adjustment2d - 2d lock exchange T/S ICs. - ! sloshing - sloshing mode T/S ICs. - ! seamount - no motion test with seamount ICs. - ! dumbbell - sloshing channel ICs. - ! rossby_front - a mixed layer front in thermal wind balance. - ! SCM_CVMix_tests - used in the SCM CVMix tests. - ! USER - call a user modified routine. -TS_FILE = "glorys_ic_1993-01-01.nc" ! - ! The initial condition file for temperature. -TEMP_IC_VAR = "temp" ! default = "PTEMP" - ! The initial condition variable for potential temperature. -SALT_IC_VAR = "salt" ! default = "SALT" - ! The initial condition variable for salinity. -SALT_FILE = "glorys_ic_1993-01-01.nc" ! default = "glorys_ic_1993-01-01.nc" - ! The initial condition file for salinity. -DEPRESS_INITIAL_SURFACE = True ! [Boolean] default = False - ! If true, depress the initial surface to avoid huge tsunamis when a large - ! surface pressure is applied. -TRIM_IC_FOR_P_SURF = False ! [Boolean] default = False - ! If true, cuts way the top of the column for initial conditions at the depth - ! where the hydrostatic pressure matches the imposed surface pressure which is - ! read from file. -SURFACE_HEIGHT_IC_FILE = "glorys_ic_1993-01-01.nc" ! - ! The initial condition file for the surface height. -SURFACE_HEIGHT_IC_VAR = "ssh" ! default = "SSH" - ! The initial condition variable for the surface height. -SURFACE_HEIGHT_IC_SCALE = 1.0 ! [variable] default = 1.0 - ! A scaling factor to convert SURFACE_HEIGHT_IC_VAR into units of m -REGRID_ACCELERATE_INIT = False ! [Boolean] default = False - ! If true, runs REGRID_ACCELERATE_ITERATIONS iterations of the regridding - ! algorithm to push the initial grid to be consistent with the initial - ! condition. Useful only for state-based and iterative coordinates. -VELOCITY_CONFIG = "file" ! default = "zero" - ! A string that determines how the initial velocities are specified for a new - ! run: - ! file - read velocities from the file specified - ! by (VELOCITY_FILE). - ! zero - the fluid is initially at rest. - ! uniform - the flow is uniform (determined by - ! parameters INITIAL_U_CONST and INITIAL_V_CONST). - ! rossby_front - a mixed layer front in thermal wind balance. - ! soliton - Equatorial Rossby soliton. - ! USER - call a user modified routine. -VELOCITY_FILE = "glorys_ic_1993-01-01.nc" ! - ! The name of the velocity initial condition file. -U_IC_VAR = "u" ! default = "u" - ! The initial condition variable for zonal velocity in VELOCITY_FILE. -V_IC_VAR = "v" ! default = "v" - ! The initial condition variable for meridional velocity in VELOCITY_FILE. -ODA_INCUPD = False ! [Boolean] default = False - ! If true, oda incremental updates will be applied everywhere in the domain. -SPONGE = False ! [Boolean] default = False - ! If true, sponges may be applied anywhere in the domain. The exact location and - ! properties of those sponges are specified via SPONGE_CONFIG. -OBC_SEGMENT_001_DATA = "U=file:uv_001.nc(u),V=file:uv_001.nc(v),SSH=file:zos_001.nc(zos),TEMP=file:thetao_001.nc(thetao),SALT=file:so_001.nc(so),Uamp=file:tu_001.nc(uamp),Uphase=file:tu_001.nc(uphase),Vamp=file:tu_001.nc(vamp),Vphase=file:tu_001.nc(vphase),SSHamp=file:tz_001.nc(zamp),SSHphase=file:tz_001.nc(zphase)" ! - ! OBC segment docs -OBC_SEGMENT_002_DATA = "U=file:uv_002.nc(u),V=file:uv_002.nc(v),SSH=file:zos_002.nc(zos),TEMP=file:thetao_002.nc(thetao),SALT=file:so_002.nc(so),Uamp=file:tu_002.nc(uamp),Uphase=file:tu_002.nc(uphase),Vamp=file:tu_002.nc(vamp),Vphase=file:tu_002.nc(vphase),SSHamp=file:tz_002.nc(zamp),SSHphase=file:tz_002.nc(zphase)" ! - ! OBC segment docs -OBC_SEGMENT_003_DATA = "U=file:uv_003.nc(u),V=file:uv_003.nc(v),SSH=file:zos_003.nc(zos),TEMP=file:thetao_003.nc(thetao),SALT=file:so_003.nc(so),Uamp=file:tu_003.nc(uamp),Uphase=file:tu_003.nc(uphase),Vamp=file:tu_003.nc(vamp),Vphase=file:tu_003.nc(vphase),SSHamp=file:tz_003.nc(zamp),SSHphase=file:tz_003.nc(zphase)" ! - ! OBC segment docs -OBC_USER_CONFIG = "none" ! default = "none" - ! A string that sets how the user code is invoked to set open boundary data: - ! DOME - specified inflow on northern boundary - ! dyed_channel - supercritical with dye on the inflow boundary - ! dyed_obcs - circle_obcs with dyes on the open boundaries - ! Kelvin - barotropic Kelvin wave forcing on the western boundary - ! shelfwave - Flather with shelf wave forcing on western boundary - ! supercritical - now only needed here for the allocations - ! tidal_bay - Flather with tidal forcing on eastern boundary - ! USER - user specified - -! === module MOM_diag_mediator === -NUM_DIAG_COORDS = 1 ! default = 1 - ! The number of diagnostic vertical coordinates to use. For each coordinate, an - ! entry in DIAG_COORDS must be provided. -USE_GRID_SPACE_DIAGNOSTIC_AXES = False ! [Boolean] default = False - ! If true, use a grid index coordinate convention for diagnostic axes. -DIAG_COORDS = "z Z ZSTAR" ! default = "z Z ZSTAR" - ! A list of string tuples associating diag_table modules to a coordinate - ! definition used for diagnostics. Each string is of the form "MODULE_SUFFIX - ! PARAMETER_SUFFIX COORDINATE_NAME". -DIAG_MISVAL = 1.0E+20 ! [various] default = 1.0E+20 - ! Set the default missing value to use for diagnostics. -DIAG_AS_CHKSUM = False ! [Boolean] default = False - ! Instead of writing diagnostics to the diag manager, write a text file - ! containing the checksum (bitcount) of the array. -AVAILABLE_DIAGS_FILE = "available_diags.000000" ! default = "available_diags.000000" - ! A file into which to write a list of all available ocean diagnostics that can - ! be included in a diag_table. -DIAG_COORD_DEF_Z = "FILE:diag_dz.nc,dz" ! default = "WOA09" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter DIAG_COORD_RES_Z - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz - -! === module MOM_MEKE === -USE_MEKE = False ! [Boolean] default = False - ! If true, turns on the MEKE scheme which calculates a sub-grid mesoscale eddy - ! kinetic energy budget. - -! === module MOM_lateral_mixing_coeffs === -USE_VARIABLE_MIXING = True ! [Boolean] default = False - ! If true, the variable mixing code will be called. This allows diagnostics to - ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or - ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter - ! file. -USE_VISBECK = False ! [Boolean] default = False - ! If true, use the Visbeck et al. (1997) formulation for - ! thickness diffusivity. -RESOLN_SCALED_KH = False ! [Boolean] default = False - ! If true, the Laplacian lateral viscosity is scaled away when the first - ! baroclinic deformation radius is well resolved. -DEPTH_SCALED_KHTH = False ! [Boolean] default = False - ! If true, KHTH is scaled away when the depth is shallowerthan a reference - ! depth: KHTH = MIN(1,H/H0)**N * KHTH, where H0 is a reference depth, controlled - ! via DEPTH_SCALED_KHTH_H0, and the exponent (N) is controlled via - ! DEPTH_SCALED_KHTH_EXP. -RESOLN_SCALED_KHTH = False ! [Boolean] default = False - ! If true, the interface depth diffusivity is scaled away when the first - ! baroclinic deformation radius is well resolved. -RESOLN_SCALED_KHTR = False ! [Boolean] default = False - ! If true, the epipycnal tracer diffusivity is scaled away when the first - ! baroclinic deformation radius is well resolved. -RESOLN_USE_EBT = False ! [Boolean] default = False - ! If true, uses the equivalent barotropic wave speed instead of first baroclinic - ! wave for calculating the resolution fn. -KHTH_USE_EBT_STRUCT = False ! [Boolean] default = False - ! If true, uses the equivalent barotropic structure as the vertical structure of - ! thickness diffusivity. -KD_GL90_USE_EBT_STRUCT = False ! [Boolean] default = False - ! If true, uses the equivalent barotropic structure as the vertical structure of - ! diffusivity in the GL90 scheme. -KHTH_SLOPE_CFF = 0.0 ! [nondim] default = 0.0 - ! The nondimensional coefficient in the Visbeck formula for the interface depth - ! diffusivity -KHTR_SLOPE_CFF = 0.0 ! [nondim] default = 0.0 - ! The nondimensional coefficient in the Visbeck formula for the epipycnal tracer - ! diffusivity -USE_STORED_SLOPES = True ! [Boolean] default = False - ! If true, the isopycnal slopes are calculated once and stored for re-use. This - ! uses more memory but avoids calling the equation of state more times than - ! should be necessary. -VERY_SMALL_FREQUENCY = 1.0E-17 ! [s-1] default = 1.0E-17 - ! A miniscule frequency that is used to avoid division by 0. The default value - ! is roughly (pi / (the age of the universe)). -USE_STANLEY_ISO = False ! [Boolean] default = False - ! If true, turn on Stanley SGS T variance parameterization in isopycnal slope - ! code. -KD_SMOOTH = 1.0E-06 ! [m2 s-1] default = 1.0E-06 - ! A diapycnal diffusivity that is used to interpolate more sensible values of T - ! & S into thin layers. -INTERNAL_WAVE_SPEED_TOL = 0.001 ! [nondim] default = 0.001 - ! The fractional tolerance for finding the wave speeds. -INTERNAL_WAVE_SPEED_MIN = 0.0 ! [m s-1] default = 0.0 - ! A floor in the first mode speed below which 0 used instead. -INTERNAL_WAVE_SPEED_BETTER_EST = True ! [Boolean] default = True - ! If true, use a more robust estimate of the first mode wave speed as the - ! starting point for iterations. -USE_QG_LEITH_GM = False ! [Boolean] default = False - ! If true, use the QG Leith viscosity as the GM coefficient. - -! === module MOM_set_visc === -SET_VISC_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the order of arithmetic and expressions in the set viscosity - ! calculations. Values below 20190101 recover the answers from the end of 2018, - ! while higher values use updated and more robust forms of the same expressions. -BOTTOMDRAGLAW = True ! [Boolean] default = True - ! If true, the bottom stress is calculated with a drag law of the form - ! c_drag*|u|*u. The velocity magnitude may be an assumed value or it may be - ! based on the actual velocity in the bottommost HBBL, depending on LINEAR_DRAG. -DRAG_AS_BODY_FORCE = False ! [Boolean] default = False - ! If true, the bottom stress is imposed as an explicit body force applied over a - ! fixed distance from the bottom, rather than as an implicit calculation based - ! on an enhanced near-bottom viscosity. The thickness of the bottom boundary - ! layer is HBBL. -CHANNEL_DRAG = True ! [Boolean] default = False - ! If true, the bottom drag is exerted directly on each layer proportional to the - ! fraction of the bottom it overlies. -LINEAR_DRAG = False ! [Boolean] default = False - ! If LINEAR_DRAG and BOTTOMDRAGLAW are defined the drag law is - ! cdrag*DRAG_BG_VEL*u. -PRANDTL_TURB = 1.25 ! [nondim] default = 1.0 - ! The turbulent Prandtl number applied to shear instability. -DYNAMIC_VISCOUS_ML = False ! [Boolean] default = False - ! If true, use a bulk Richardson number criterion to determine the mixed layer - ! thickness for viscosity. -HBBL = 10.0 ! [m] - ! The thickness of a bottom boundary layer with a viscosity increased by - ! KV_EXTRA_BBL if BOTTOMDRAGLAW is not defined, or the thickness over which - ! near-bottom velocities are averaged for the drag law if BOTTOMDRAGLAW is - ! defined but LINEAR_DRAG is not. -CDRAG = 0.003 ! [nondim] default = 0.003 - ! CDRAG is the drag coefficient relating the magnitude of the velocity field to - ! the bottom stress. CDRAG is only used if BOTTOMDRAGLAW is defined. -BBL_USE_TIDAL_BG = False ! [Boolean] default = False - ! Flag to use the tidal RMS amplitude in place of constant background velocity - ! for computing u* in the BBL. This flag is only used when BOTTOMDRAGLAW is true - ! and LINEAR_DRAG is false. -DRAG_BG_VEL = 0.0 ! [m s-1] default = 0.0 - ! DRAG_BG_VEL is either the assumed bottom velocity (with LINEAR_DRAG) or an - ! unresolved velocity that is combined with the resolved velocity to estimate - ! the velocity magnitude. DRAG_BG_VEL is only used when BOTTOMDRAGLAW is - ! defined. -BBL_USE_EOS = True ! [Boolean] default = True - ! If true, use the equation of state in determining the properties of the bottom - ! boundary layer. Otherwise use the layer target potential densities. The - ! default of this parameter is the value of USE_EOS. -BBL_THICK_MIN = 0.1 ! [m] default = 0.0 - ! The minimum bottom boundary layer thickness that can be used with - ! BOTTOMDRAGLAW. This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum - ! near-bottom viscosity. -HTBL_SHELF_MIN = 0.1 ! [m] default = 0.1 - ! The minimum top boundary layer thickness that can be used with BOTTOMDRAGLAW. - ! This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum near-top - ! viscosity. -HTBL_SHELF = 10.0 ! [m] default = 10.0 - ! The thickness over which near-surface velocities are averaged for the drag law - ! under an ice shelf. By default this is the same as HBBL -KV = 1.0E-06 ! [m2 s-1] - ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 - ! m2 s-1, may be used. -KV_BBL_MIN = 1.0E-06 ! [m2 s-1] default = 1.0E-06 - ! The minimum viscosities in the bottom boundary layer. -KV_TBL_MIN = 1.0E-06 ! [m2 s-1] default = 1.0E-06 - ! The minimum viscosities in the top boundary layer. -CORRECT_BBL_BOUNDS = False ! [Boolean] default = False - ! If true, uses the correct bounds on the BBL thickness and viscosity so that - ! the bottom layer feels the intended drag. -SMAG_CONST_CHANNEL = 0.15 ! [nondim] default = 0.15 - ! The nondimensional Laplacian Smagorinsky constant used in calculating the - ! channel drag if it is enabled. The default is to use the same value as - ! SMAG_LAP_CONST if it is defined, or 0.15 if it is not. The value used is also - ! 0.15 if the specified value is negative. -CHANNEL_DRAG_MAX_BBL_THICK = 5.0 ! [m] default = 5.0 - ! The maximum bottom boundary layer thickness over which the channel drag is - ! exerted, or a negative value for no fixed limit, instead basing the BBL - ! thickness on the bottom stress, rotation and stratification. The default is - ! proportional to HBBL if USE_JACKSON_PARAM or DRAG_AS_BODY_FORCE is true. - -! === module MOM_thickness_diffuse === -KHTH = 0.0 ! [m2 s-1] default = 0.0 - ! The background horizontal thickness diffusivity. -READ_KHTH = False ! [Boolean] default = False - ! If true, read a file (given by KHTH_FILE) containing the spatially varying - ! horizontal isopycnal height diffusivity. -KHTH_MIN = 0.0 ! [m2 s-1] default = 0.0 - ! The minimum horizontal thickness diffusivity. -KHTH_MAX = 0.0 ! [m2 s-1] default = 0.0 - ! The maximum horizontal thickness diffusivity. -KHTH_MAX_CFL = 0.1 ! [nondimensional] default = 0.8 - ! The maximum value of the local diffusive CFL ratio that is permitted for the - ! thickness diffusivity. 1.0 is the marginally unstable value in a pure layered - ! model, but much smaller numbers (e.g. 0.1) seem to work better for ALE-based - ! models. -KH_ETA_CONST = 0.0 ! [m2 s-1] default = 0.0 - ! The background horizontal diffusivity of the interface heights (without - ! considering the layer density structure). If diffusive CFL limits are - ! encountered, the diffusivities of the isopycnals and the interfaces heights - ! are scaled back proportionately. -KH_ETA_VEL_SCALE = 0.0 ! [m s-1] default = 0.0 - ! A velocity scale that is multiplied by the grid spacing to give a contribution - ! to the horizontal diffusivity of the interface heights (without considering - ! the layer density structure). -DETANGLE_INTERFACES = False ! [Boolean] default = False - ! If defined add 3-d structured enhanced interface height diffusivities to - ! horizontally smooth jagged layers. -KHTH_SLOPE_MAX = 0.01 ! [nondim] default = 0.01 - ! A slope beyond which the calculated isopycnal slope is not reliable and is - ! scaled away. -KHTH_USE_FGNV_STREAMFUNCTION = False ! [Boolean] default = False - ! If true, use the streamfunction formulation of Ferrari et al., 2010, which - ! effectively emphasizes graver vertical modes by smoothing in the vertical. -USE_STANLEY_GM = False ! [Boolean] default = False - ! If true, turn on Stanley SGS T variance parameterization in GM code. -MEKE_GM_SRC_ALT = False ! [Boolean] default = False - ! If true, use the GM energy conversion form S^2*N^2*kappa rather than the - ! streamfunction for the GM source term. -MEKE_GEOMETRIC = False ! [Boolean] default = False - ! If true, uses the GM coefficient formulation from the GEOMETRIC framework - ! (Marshall et al., 2012). -USE_KH_IN_MEKE = False ! [Boolean] default = False - ! If true, uses the thickness diffusivity calculated here to diffuse MEKE. -USE_GME = False ! [Boolean] default = False - ! If true, use the GM+E backscatter scheme in association with the Gent and - ! McWilliams parameterization. -USE_GM_WORK_BUG = False ! [Boolean] default = False - ! If true, compute the top-layer work tendency on the u-grid with the incorrect - ! sign, for legacy reproducibility. -STOCH_EOS = False ! [Boolean] default = False - ! If true, stochastic perturbations are applied to the EOS in the PGF. -STANLEY_COEFF = -1.0 ! [nondim] default = -1.0 - ! Coefficient correlating the temperature gradient and SGS T variance. - -! === module MOM_porous_barriers === -PORBAR_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the porous barrier weight function calculations. Values below - ! 20220806 recover the old answers in which the layer averaged weights are not - ! strictly limited by an upper-bound of 1.0 . -PORBAR_MASKING_DEPTH = 0.0 ! [m] default = 0.0 - ! If the effective average depth at the velocity cell is shallower than this - ! number, then porous barrier is not applied at that location. - ! PORBAR_MASKING_DEPTH is assumed to be positive below the sea surface. -PORBAR_ETA_INTERP = "MAX" ! default = "MAX" - ! A string describing the method that decides how the interface heights at the - ! velocity points are calculated. Valid values are: - ! MAX (the default) - maximum of the adjacent cells - ! MIN - minimum of the adjacent cells - ! ARITHMETIC - arithmetic mean of the adjacent cells - ! HARMONIC - harmonic mean of the adjacent cells - -! === module MOM_dynamics_split_RK2 === -TIDES = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing. -CALCULATE_SAL = True ! [Boolean] default = True - ! If true, calculate self-attraction and loading. -BE = 0.6 ! [nondim] default = 0.6 - ! If SPLIT is true, BE determines the relative weighting of a 2nd-order - ! Runga-Kutta baroclinic time stepping scheme (0.5) and a backward Euler scheme - ! (1) that is used for the Coriolis and inertial terms. BE may be from 0.5 to - ! 1, but instability may occur near 0.5. BE is also applicable if SPLIT is false - ! and USE_RK2 is true. -BEGW = 0.0 ! [nondim] default = 0.0 - ! If SPLIT is true, BEGW is a number from 0 to 1 that controls the extent to - ! which the treatment of gravity waves is forward-backward (0) or simulated - ! backward Euler (1). 0 is almost always used. If SPLIT is false and USE_RK2 is - ! true, BEGW can be between 0 and 0.5 to damp gravity waves. -SPLIT_BOTTOM_STRESS = False ! [Boolean] default = False - ! If true, provide the bottom stress calculated by the vertical viscosity to the - ! barotropic solver. -BT_USE_LAYER_FLUXES = True ! [Boolean] default = True - ! If true, use the summed layered fluxes plus an adjustment due to the change in - ! the barotropic velocity in the barotropic continuity equation. -STORE_CORIOLIS_ACCEL = True ! [Boolean] default = True - ! If true, calculate the Coriolis accelerations at the end of each timestep for - ! use in the predictor step of the next split RK2 timestep. -FPMIX = False ! [Boolean] default = False - ! If true, apply profiles of momentum flux magnitude and direction - -! === module MOM_continuity_PPM === -MONOTONIC_CONTINUITY = False ! [Boolean] default = False - ! If true, CONTINUITY_PPM uses the Colella and Woodward monotonic limiter. The - ! default (false) is to use a simple positive definite limiter. -SIMPLE_2ND_PPM_CONTINUITY = False ! [Boolean] default = False - ! If true, CONTINUITY_PPM uses a simple 2nd order (arithmetic mean) - ! interpolation of the edge values. This may give better PV conservation - ! properties. While it formally reduces the accuracy of the continuity solver - ! itself in the strongly advective limit, it does not reduce the overall order - ! of accuracy of the dynamic core. -UPWIND_1ST_CONTINUITY = False ! [Boolean] default = False - ! If true, CONTINUITY_PPM becomes a 1st-order upwind continuity solver. This - ! scheme is highly diffusive but may be useful for debugging or in single-column - ! mode where its minimal stencil is useful. -ETA_TOLERANCE = 3.75E-09 ! [m] default = 3.75E-09 - ! The tolerance for the differences between the barotropic and baroclinic - ! estimates of the sea surface height due to the fluxes through each face. The - ! total tolerance for SSH is 4 times this value. The default is - ! 0.5*NK*ANGSTROM, and this should not be set less than about - ! 10^-15*MAXIMUM_DEPTH. -VELOCITY_TOLERANCE = 3.0E+08 ! [m s-1] default = 3.0E+08 - ! The tolerance for barotropic velocity discrepancies between the barotropic - ! solution and the sum of the layer thicknesses. -CONT_PPM_AGGRESS_ADJUST = False ! [Boolean] default = False - ! If true, allow the adjusted velocities to have a relative CFL change up to - ! 0.5. -CONT_PPM_VOLUME_BASED_CFL = False ! [Boolean] default = False - ! If true, use the ratio of the open face lengths to the tracer cell areas when - ! estimating CFL numbers. The default is set by CONT_PPM_AGGRESS_ADJUST. -CONTINUITY_CFL_LIMIT = 0.5 ! [nondim] default = 0.5 - ! The maximum CFL of the adjusted velocities. -CONT_PPM_BETTER_ITER = True ! [Boolean] default = True - ! If true, stop corrective iterations using a velocity based criterion and only - ! stop if the iteration is better than all predecessors. -CONT_PPM_USE_VISC_REM_MAX = True ! [Boolean] default = True - ! If true, use more appropriate limiting bounds for corrections in strongly - ! viscous columns. -CONT_PPM_MARGINAL_FACE_AREAS = True ! [Boolean] default = True - ! If true, use the marginal face areas from the continuity solver for use as the - ! weights in the barotropic solver. Otherwise use the transport averaged areas. - -! === module MOM_CoriolisAdv === -NOSLIP = False ! [Boolean] default = False - ! If true, no slip boundary conditions are used; otherwise free slip boundary - ! conditions are assumed. The implementation of the free slip BCs on a C-grid is - ! much cleaner than the no slip BCs. The use of free slip BCs is strongly - ! encouraged, and no slip BCs are not used with the biharmonic viscosity. -CORIOLIS_EN_DIS = True ! [Boolean] default = False - ! If true, two estimates of the thickness fluxes are used to estimate the - ! Coriolis term, and the one that dissipates energy relative to the other one is - ! used. -CORIOLIS_SCHEME = "SADOURNY75_ENERGY" ! default = "SADOURNY75_ENERGY" - ! CORIOLIS_SCHEME selects the discretization for the Coriolis terms. Valid - ! values are: - ! SADOURNY75_ENERGY - Sadourny, 1975; energy cons. - ! ARAKAWA_HSU90 - Arakawa & Hsu, 1990 - ! SADOURNY75_ENSTRO - Sadourny, 1975; enstrophy cons. - ! ARAKAWA_LAMB81 - Arakawa & Lamb, 1981; En. + Enst. - ! ARAKAWA_LAMB_BLEND - A blend of Arakawa & Lamb with - ! Arakawa & Hsu and Sadourny energy -BOUND_CORIOLIS = False ! [Boolean] default = False - ! If true, the Coriolis terms at u-points are bounded by the four estimates of - ! (f+rv)v from the four neighboring v-points, and similarly at v-points. This - ! option is always effectively false with CORIOLIS_EN_DIS defined and - ! CORIOLIS_SCHEME set to SADOURNY75_ENERGY. -KE_SCHEME = "KE_ARAKAWA" ! default = "KE_ARAKAWA" - ! KE_SCHEME selects the discretization for acceleration due to the kinetic - ! energy gradient. Valid values are: - ! KE_ARAKAWA, KE_SIMPLE_GUDONOV, KE_GUDONOV -PV_ADV_SCHEME = "PV_ADV_CENTERED" ! default = "PV_ADV_CENTERED" - ! PV_ADV_SCHEME selects the discretization for PV advection. Valid values are: - ! PV_ADV_CENTERED - centered (aka Sadourny, 75) - ! PV_ADV_UPWIND1 - upwind, first order - -! === module MOM_self_attr_load === -SAL_SCALAR_APPROX = True ! [Boolean] default = True - ! If true, use the scalar approximation to calculate self-attraction and - ! loading. -SAL_SCALAR_VALUE = 0.01 ! [m m-1] default = 0.01 - ! The constant of proportionality between sea surface height (really it should - ! be bottom pressure) anomalies and bottom geopotential anomalies. This is only - ! used if USE_SAL_SCALAR is true or USE_PREVIOUS_TIDES is true. -SAL_HARMONICS = False ! [Boolean] default = False - ! If true, use the online spherical harmonics method to calculate - ! self-attraction and loading. - -! === module MOM_tidal_forcing === -TIDE_M2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the M2 frequency. This is only used - ! if TIDES is true. -TIDE_S2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the S2 frequency. This is only used - ! if TIDES is true. -TIDE_N2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the N2 frequency. This is only used - ! if TIDES is true. -TIDE_K2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the K2 frequency. This is only used - ! if TIDES is true. -TIDE_K1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the K1 frequency. This is only used - ! if TIDES is true. -TIDE_O1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the O1 frequency. This is only used - ! if TIDES is true. -TIDE_P1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the P1 frequency. This is only used - ! if TIDES is true. -TIDE_Q1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the Q1 frequency. This is only used - ! if TIDES is true. -TIDE_MF = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the MF frequency. This is only used - ! if TIDES is true. -TIDE_MM = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the MM frequency. This is only used - ! if TIDES is true. -TIDAL_SAL_FROM_FILE = False ! [Boolean] default = False - ! If true, read the tidal self-attraction and loading from input files, - ! specified by TIDAL_INPUT_FILE. This is only used if TIDES is true. -USE_PREVIOUS_TIDES = False ! [Boolean] default = False - ! If true, use the SAL from the previous iteration of the tides to facilitate - ! convergent iteration. This is only used if TIDES is true. -TIDE_REF_DATE = 1993, 1, 1 ! default = 0 - ! Year,month,day to use as reference date for tidal forcing. If not specified, - ! defaults to 0. -TIDE_USE_EQ_PHASE = True ! [Boolean] default = False - ! Correct phases by calculating equilibrium phase arguments for TIDE_REF_DATE. -TIDE_M2_AMP = 0.242334 ! [m] default = 0.242334 - ! Amplitude of the M2 tidal constituent. This is only used if TIDES and TIDE_M2 - ! are true. -TIDE_M2_PHASE_T0 = 9.347582645568489 ! [radians] default = 9.347582645568489 - ! Phase of the M2 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_M2 are true. -TIDE_S2_AMP = 0.112743 ! [m] default = 0.112743 - ! Amplitude of the S2 tidal constituent. This is only used if TIDES and TIDE_S2 - ! are true. -TIDE_S2_PHASE_T0 = 0.0 ! [radians] default = 0.0 - ! Phase of the S2 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_S2 are true. -TIDE_N2_AMP = 0.046397 ! [m] default = 0.046397 - ! Amplitude of the N2 tidal constituent. This is only used if TIDES and TIDE_N2 - ! are true. -TIDE_N2_PHASE_T0 = 11.890182671016415 ! [radians] default = 11.890182671016415 - ! Phase of the N2 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_N2 are true. -TIDE_K2_AMP = 0.030684 ! [m] default = 0.030684 - ! Amplitude of the K2 tidal constituent. This is only used if TIDES and TIDE_K2 - ! are true. -TIDE_K2_PHASE_T0 = 9.79682726018515 ! [radians] default = 9.79682726018515 - ! Phase of the K2 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_K2 are true. -TIDE_K1_AMP = 0.141565 ! [m] default = 0.141565 - ! Amplitude of the K1 tidal constituent. This is only used if TIDES and TIDE_K1 - ! are true. -TIDE_K1_PHASE_T0 = 6.469209956887472 ! [radians] default = 6.469209956887472 - ! Phase of the K1 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_K1 are true. -TIDE_O1_AMP = 0.100661 ! [m] default = 0.100661 - ! Amplitude of the O1 tidal constituent. This is only used if TIDES and TIDE_O1 - ! are true. -TIDE_O1_PHASE_T0 = 2.878372688681016 ! [radians] default = 2.878372688681016 - ! Phase of the O1 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_O1 are true. -TIDE_P1_AMP = 0.046848 ! [m] default = 0.046848 - ! Amplitude of the P1 tidal constituent. This is only used if TIDES and TIDE_P1 - ! are true. -TIDE_P1_PHASE_T0 = -6.469209956887472 ! [radians] default = -6.469209956887472 - ! Phase of the P1 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_P1 are true. -TIDE_Q1_AMP = 0.019273 ! [m] default = 0.019273 - ! Amplitude of the Q1 tidal constituent. This is only used if TIDES and TIDE_Q1 - ! are true. -TIDE_Q1_PHASE_T0 = 5.420972714128944 ! [radians] default = 5.420972714128944 - ! Phase of the Q1 tidal constituent at time 0. This is only used if TIDES and - ! TIDE_Q1 are true. -TIDE_MF_AMP = 0.042041 ! [m] default = 0.042041 - ! Amplitude of the MF tidal constituent. This is only used if TIDES and TIDE_MF - ! are true. -TIDE_MF_PHASE_T0 = 0.4492446146166624 ! [radians] default = 0.4492446146166624 - ! Phase of the MF tidal constituent at time 0. This is only used if TIDES and - ! TIDE_MF are true. -TIDE_MM_AMP = 0.022191 ! [m] default = 0.022191 - ! Amplitude of the MM tidal constituent. This is only used if TIDES and TIDE_MM - ! are true. -TIDE_MM_PHASE_T0 = -2.542600025447928 ! [radians] default = -2.542600025447928 - ! Phase of the MM tidal constituent at time 0. This is only used if TIDES and - ! TIDE_MM are true. - -! === module MOM_PressureForce === -ANALYTIC_FV_PGF = True ! [Boolean] default = True - ! If true the pressure gradient forces are calculated with a finite volume form - ! that analytically integrates the equations of state in pressure to avoid any - ! possibility of numerical thermobaric instability, as described in Adcroft et - ! al., O. Mod. (2008). - -! === module MOM_PressureForce_FV === -RHO_PGF_REF = 1035.0 ! [kg m-3] default = 1035.0 - ! The reference density that is subtracted off when calculating pressure - ! gradient forces. Its inverse is subtracted off of specific volumes when in - ! non-Boussinesq mode. The default is RHO_0. -TIDES_ANSWER_DATE = 20230630 ! default = 20230630 - ! The vintage of self-attraction and loading (SAL) and tidal forcing - ! calculations in Boussinesq mode. Values below 20230701 recover the old answers - ! in which the SAL is part of the tidal forcing calculation. The change is due - ! to a reordered summation and the difference is only at bit level. -MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False - ! If true, use mass weighting when interpolating T/S for integrals near the - ! bathymetry in FV pressure gradient calculations. -USE_INACCURATE_PGF_RHO_ANOM = False ! [Boolean] default = False - ! If true, use a form of the PGF that uses the reference density in an - ! inaccurate way. This is not recommended. -RECONSTRUCT_FOR_PRESSURE = True ! [Boolean] default = True - ! If True, use vertical reconstruction of T & S within the integrals of the FV - ! pressure gradient calculation. If False, use the constant-by-layer algorithm. - ! The default is set by USE_REGRIDDING. -PRESSURE_RECONSTRUCTION_SCHEME = 1 ! default = 1 - ! Order of vertical reconstruction of T/S to use in the integrals within the FV - ! pressure gradient calculation. - ! 0: PCM or no reconstruction. - ! 1: PLM reconstruction. - ! 2: PPM reconstruction. -BOUNDARY_EXTRAPOLATION_PRESSURE = True ! [Boolean] default = True - ! If true, the reconstruction of T & S for pressure in boundary cells is - ! extrapolated, rather than using PCM in these cells. If true, the same order - ! polynomial is used as is used for the interior cells. -USE_STANLEY_PGF = False ! [Boolean] default = False - ! If true, turn on Stanley SGS T variance parameterization in PGF code. - -! === module MOM_Zanna_Bolton === -USE_ZB2020 = False ! [Boolean] default = False - ! If true, turns on Zanna-Bolton-2020 (ZB) subgrid momentum parameterization of - ! mesoscale eddies. - -! === module MOM_hor_visc === -HOR_VISC_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the order of arithmetic and expressions in the horizontal - ! viscosity calculations. Values below 20190101 recover the answers from the - ! end of 2018, while higher values use updated and more robust forms of the same - ! expressions. -LAPLACIAN = False ! [Boolean] default = False - ! If true, use a Laplacian horizontal viscosity. -BIHARMONIC = True ! [Boolean] default = True - ! If true, use a biharmonic horizontal viscosity. BIHARMONIC may be used with - ! LAPLACIAN. -AH = 0.0 ! [m4 s-1] default = 0.0 - ! The background biharmonic horizontal viscosity. -AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the cube of the grid spacing to - ! calculate the biharmonic viscosity. The final viscosity is the largest of this - ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. -AH_TIME_SCALE = 0.0 ! [s] default = 0.0 - ! A time scale whose inverse is multiplied by the fourth power of the grid - ! spacing to calculate biharmonic viscosity. The final viscosity is the largest - ! of all viscosity formulations in use. 0.0 means that it's not used. -SMAGORINSKY_AH = True ! [Boolean] default = False - ! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity. -LEITH_AH = False ! [Boolean] default = False - ! If true, use a biharmonic Leith nonlinear eddy viscosity. -USE_LEITHY = False ! [Boolean] default = False - ! If true, use a biharmonic Leith nonlinear eddy viscosity together with a - ! harmonic backscatter. -BOUND_AH = True ! [Boolean] default = True - ! If true, the biharmonic coefficient is locally limited to be stable. -BETTER_BOUND_AH = True ! [Boolean] default = True - ! If true, the biharmonic coefficient is locally limited to be stable with a - ! better bounding than just BOUND_AH. -RE_AH = 0.0 ! [nondim] default = 0.0 - ! If nonzero, the biharmonic coefficient is scaled so that the biharmonic - ! Reynolds number is equal to this. -SMAG_BI_CONST = 0.015 ! [nondim] default = 0.0 - ! The nondimensional biharmonic Smagorinsky constant, typically 0.015 - 0.06. -BOUND_CORIOLIS_BIHARM = False ! [Boolean] default = False - ! If true use a viscosity that increases with the square of the velocity shears, - ! so that the resulting viscous drag is of comparable magnitude to the Coriolis - ! terms when the velocity differences between adjacent grid points is - ! 0.5*BOUND_CORIOLIS_VEL. The default is the value of BOUND_CORIOLIS (or - ! false). -USE_LAND_MASK_FOR_HVISC = True ! [Boolean] default = True - ! If true, use the land mask for the computation of thicknesses at velocity - ! locations. This eliminates the dependence on arbitrary values over land or - ! outside of the domain. -HORVISC_BOUND_COEF = 0.8 ! [nondim] default = 0.8 - ! The nondimensional coefficient of the ratio of the viscosity bounds to the - ! theoretical maximum for stability without considering other terms. - -! === module MOM_vert_friction === -VERT_FRICTION_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the order of arithmetic and expressions in the viscous - ! calculations. Values below 20190101 recover the answers from the end of 2018, - ! while higher values use expressions that do not use an arbitrary hard-coded - ! maximum viscous coupling coefficient between layers. Values below 20230601 - ! recover a form of the viscosity within the mixed layer that breaks up the - ! magnitude of the wind stress in some non-Boussinesq cases. -DIRECT_STRESS = True ! [Boolean] default = False - ! If true, the wind stress is distributed over the topmost HMIX_STRESS of fluid - ! (like in HYCOM), and an added mixed layer viscosity or a physically based - ! boundary layer turbulence parameterization is not needed for stability. -FIXED_DEPTH_LOTW_ML = False ! [Boolean] default = False - ! If true, use a Law-of-the-wall prescription for the mixed layer viscosity - ! within a boundary layer that is the lesser of HMIX_FIXED and the total depth - ! of the ocean in a column. -LOTW_VISCOUS_ML_FLOOR = False ! [Boolean] default = False - ! If true, use a Law-of-the-wall prescription to set a lower bound on the - ! viscous coupling between layers within the surface boundary layer, based the - ! distance of interfaces from the surface. This only acts when there are large - ! changes in the thicknesses of successive layers or when the viscosity is set - ! externally and the wind stress has subsequently increased. -VON_KARMAN_CONST = 0.41 ! [nondim] default = 0.41 - ! The value the von Karman constant as used for mixed layer viscosity. -HARMONIC_VISC = False ! [Boolean] default = False - ! If true, use the harmonic mean thicknesses for calculating the vertical - ! viscosity. -HARMONIC_BL_SCALE = 0.0 ! [nondim] default = 0.0 - ! A scale to determine when water is in the boundary layers based solely on - ! harmonic mean thicknesses for the purpose of determining the extent to which - ! the thicknesses used in the viscosities are upwinded. -HMIX_FIXED = 0.9 ! [m] - ! The prescribed depth over which the near-surface viscosity and diffusivity are - ! elevated when the bulk mixed layer is not used. -HMIX_STRESS = 0.9 ! [m] default = 0.9 - ! The depth over which the wind stress is applied if DIRECT_STRESS is true. -USE_GL90_IN_SSW = False ! [Boolean] default = False - ! If true, use simpler method to calculate 1/N^2 in GL90 vertical viscosity - ! coefficient. This method is valid in stacked shallow water mode. -KV_ML_INVZ2 = 0.0 ! [m2 s-1] default = 0.0 - ! An extra kinematic viscosity in a mixed layer of thickness HMIX_FIXED, with - ! the actual viscosity scaling as 1/(z*HMIX_FIXED)^2, where z is the distance - ! from the surface, to allow for finite wind stresses to be transmitted through - ! infinitesimally thin surface layers. This is an older option for numerical - ! convenience without a strong physical basis, and its use is now discouraged. -MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 - ! The maximum velocity allowed before the velocity components are truncated. -CFL_BASED_TRUNCATIONS = True ! [Boolean] default = True - ! If true, base truncations on the CFL number, and not an absolute speed. -CFL_TRUNCATE = 0.5 ! [nondim] default = 0.5 - ! The value of the CFL number that will cause velocity components to be - ! truncated; instability can occur past 0.5. -CFL_REPORT = 0.5 ! [nondim] default = 0.5 - ! The value of the CFL number that causes accelerations to be reported; the - ! default is CFL_TRUNCATE. -CFL_TRUNCATE_RAMP_TIME = 0.0 ! [s] default = 0.0 - ! The time over which the CFL truncation value is ramped up at the beginning of - ! the run. -CFL_TRUNCATE_START = 0.0 ! [nondim] default = 0.0 - ! The start value of the truncation CFL number used when ramping up CFL_TRUNC. -STOKES_MIXING_COMBINED = False ! [Boolean] default = False - ! Flag to use Stokes drift Mixing via the Lagrangian current (Eulerian plus - ! Stokes drift). Still needs work and testing, so not recommended for use. -VEL_UNDERFLOW = 0.0 ! [m s-1] default = 0.0 - ! A negligibly small velocity magnitude below which velocity components are set - ! to 0. A reasonable value might be 1e-30 m/s, which is less than an Angstrom - ! divided by the age of the universe. - -! === module MOM_barotropic === -USE_BT_CONT_TYPE = True ! [Boolean] default = True - ! If true, use a structure with elements that describe effective face areas from - ! the summed continuity solver as a function the barotropic flow in coupling - ! between the barotropic and baroclinic flow. This is only used if SPLIT is - ! true. -INTEGRAL_BT_CONTINUITY = False ! [Boolean] default = False - ! If true, use the time-integrated velocity over the barotropic steps to - ! determine the integrated transports used to update the continuity equation. - ! Otherwise the transports are the sum of the transports based on a series of - ! instantaneous velocities and the BT_CONT_TYPE for transports. This is only - ! valid if USE_BT_CONT_TYPE = True. -BOUND_BT_CORRECTION = True ! [Boolean] default = False - ! If true, the corrective pseudo mass-fluxes into the barotropic solver are - ! limited to values that require less than maxCFL_BT_cont to be accommodated. -BT_CONT_CORR_BOUNDS = True ! [Boolean] default = True - ! If true, and BOUND_BT_CORRECTION is true, use the BT_cont_type variables to - ! set limits determined by MAXCFL_BT_CONT on the CFL number of the velocities - ! that are likely to be driven by the corrective mass fluxes. -ADJUST_BT_CONT = False ! [Boolean] default = False - ! If true, adjust the curve fit to the BT_cont type that is used by the - ! barotropic solver to match the transport about which the flow is being - ! linearized. -GRADUAL_BT_ICS = False ! [Boolean] default = False - ! If true, adjust the initial conditions for the barotropic solver to the values - ! from the layered solution over a whole timestep instead of instantly. This is - ! a decent approximation to the inclusion of sum(u dh_dt) while also correcting - ! for truncation errors. -BT_USE_VISC_REM_U_UH0 = False ! [Boolean] default = False - ! If true, use the viscous remnants when estimating the barotropic velocities - ! that were used to calculate uh0 and vh0. False is probably the better choice. -BT_PROJECT_VELOCITY = True ! [Boolean] default = False - ! If true, step the barotropic velocity first and project out the velocity - ! tendency by 1+BEBT when calculating the transport. The default (false) is to - ! use a predictor continuity step to find the pressure field, and then to do a - ! corrector continuity step using a weighted average of the old and new - ! velocities, with weights of (1-BEBT) and BEBT. -BT_NONLIN_STRESS = True ! [Boolean] default = False - ! If true, use the full depth of the ocean at the start of the barotropic step - ! when calculating the surface stress contribution to the barotropic - ! acclerations. Otherwise use the depth based on bathyT. -DYNAMIC_SURFACE_PRESSURE = True ! [Boolean] default = False - ! If true, add a dynamic pressure due to a viscous ice shelf, for instance. -ICE_LENGTH_DYN_PSURF = 1.0E+04 ! [m] default = 1.0E+04 - ! The length scale at which the Rayleigh damping rate due to the ice strength - ! should be the same as if a Laplacian were applied, if DYNAMIC_SURFACE_PRESSURE - ! is true. -DEPTH_MIN_DYN_PSURF = 1.0E-06 ! [m] default = 1.0E-06 - ! The minimum depth to use in limiting the size of the dynamic surface pressure - ! for stability, if DYNAMIC_SURFACE_PRESSURE is true.. -CONST_DYN_PSURF = 0.9 ! [nondim] default = 0.9 - ! The constant that scales the dynamic surface pressure, if - ! DYNAMIC_SURFACE_PRESSURE is true. Stable values are < ~1.0. -BT_CORIOLIS_SCALE = 1.0 ! [nondim] default = 1.0 - ! A factor by which the barotropic Coriolis anomaly terms are scaled. -BAROTROPIC_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the expressions in the barotropic solver. Values below 20190101 - ! recover the answers from the end of 2018, while higher values uuse more - ! efficient or general expressions. -BAROTROPIC_TIDAL_SAL_BUG = False ! [Boolean] default = False - ! If true, the tidal self-attraction and loading anomaly in the barotropic - ! solver has the wrong sign, replicating a long-standing bug with a scalar - ! self-attraction and loading term or the SAL term from a previous simulation. -TIDAL_SAL_FLATHER = True ! [Boolean] default = False - ! If true, then apply adjustments to the external gravity wave speed used with - ! the Flather OBC routine consistent with the barotropic solver. This applies to - ! cases with tidal forcing using the scalar self-attraction approximation. The - ! default is currently False in order to retain previous answers but should be - ! set to True for new experiments -SADOURNY = False ! [Boolean] default = True - ! If true, the Coriolis terms are discretized with the Sadourny (1975) energy - ! conserving scheme, otherwise the Arakawa & Hsu scheme is used. If the - ! internal deformation radius is not resolved, the Sadourny scheme should - ! probably be used. -BT_THICK_SCHEME = "FROM_BT_CONT" ! default = "FROM_BT_CONT" - ! A string describing the scheme that is used to set the open face areas used - ! for barotropic transport and the relative weights of the accelerations. Valid - ! values are: - ! ARITHMETIC - arithmetic mean layer thicknesses - ! HARMONIC - harmonic mean layer thicknesses - ! HYBRID (the default) - use arithmetic means for - ! layers above the shallowest bottom, the harmonic - ! mean for layers below, and a weighted average for - ! layers that straddle that depth - ! FROM_BT_CONT - use the average thicknesses kept - ! in the h_u and h_v fields of the BT_cont_type -BT_STRONG_DRAG = True ! [Boolean] default = False - ! If true, use a stronger estimate of the retarding effects of strong bottom - ! drag, by making it implicit with the barotropic time-step instead of implicit - ! with the baroclinic time-step and dividing by the number of barotropic steps. -BT_LINEAR_WAVE_DRAG = False ! [Boolean] default = False - ! If true, apply a linear drag to the barotropic velocities, using rates set by - ! lin_drag_u & _v divided by the depth of the ocean. This was introduced to - ! facilitate tide modeling. -CLIP_BT_VELOCITY = False ! [Boolean] default = False - ! If true, limit any velocity components that exceed CFL_TRUNCATE. This should - ! only be used as a desperate debugging measure. -MAXCFL_BT_CONT = 0.25 ! [nondim] default = 0.25 - ! The maximum permitted CFL number associated with the barotropic accelerations - ! from the summed velocities times the time-derivatives of thicknesses. -DT_BT_FILTER = -0.25 ! [sec or nondim] default = -0.25 - ! A time-scale over which the barotropic mode solutions are filtered, in seconds - ! if positive, or as a fraction of DT if negative. When used this can never be - ! taken to be longer than 2*dt. Set this to 0 to apply no filtering. -G_BT_EXTRA = 0.0 ! [nondim] default = 0.0 - ! A nondimensional factor by which gtot is enhanced. -SSH_EXTRA = 10.0 ! [m] default = 10.0 - ! An estimate of how much higher SSH might get, for use in calculating the safe - ! external wave speed. The default is the minimum of 10 m or 5% of - ! MAXIMUM_DEPTH. -LINEARIZED_BT_CORIOLIS = False ! [Boolean] default = True - ! If true use the bottom depth instead of the total water column thickness in - ! the barotropic Coriolis term calculations. -BEBT = 0.2 ! [nondim] default = 0.1 - ! BEBT determines whether the barotropic time stepping uses the forward-backward - ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range - ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 - ! (for a backward Euler treatment). In practice, BEBT must be greater than about - ! 0.05. -DTBT = -0.9 ! [s or nondim] default = -0.98 - ! The barotropic time step, in s. DTBT is only used with the split explicit time - ! stepping. To set the time step automatically based the maximum stable value - ! use 0, or a negative value gives the fraction of the stable value. Setting - ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will - ! actually be used is an integer fraction of DT, rounding down. -BT_USE_OLD_CORIOLIS_BRACKET_BUG = False ! [Boolean] default = False - ! If True, use an order of operations that is not bitwise rotationally symmetric - ! in the meridional Coriolis term of the barotropic solver. - -! === module MOM_mixed_layer_restrat === -MIXEDLAYER_RESTRAT = True ! [Boolean] default = False - ! If true, a density-gradient dependent re-stratifying flow is imposed in the - ! mixed layer. Can be used in ALE mode without restriction but in layer mode can - ! only be used if BULKMIXEDLAYER is true. -MLE% -USE_BODNER23 = False ! [Boolean] default = False - ! If true, use the Bodner et al., 2023, formulation of the re-stratifying - ! mixed-layer restratification parameterization. This only works in ALE mode. -%MLE -FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0 - ! A nondimensional coefficient that is proportional to the ratio of the - ! deformation radius to the dominant lengthscale of the submesoscale mixed layer - ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic - ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of - ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. - ! (2010) -USE_STANLEY_ML = False ! [Boolean] default = False - ! If true, turn on Stanley SGS T variance parameterization in ML restrat code. -FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0 - ! As for FOX_KEMPER_ML_RESTRAT_COEF but used in a second application of the MLE - ! restratification parameterization. -MLE_FRONT_LENGTH = 1500.0 ! [m] default = 0.0 - ! If non-zero, is the frontal-length scale used to calculate the upscaling of - ! buoyancy gradients that is otherwise represented by the parameter - ! FOX_KEMPER_ML_RESTRAT_COEF. If MLE_FRONT_LENGTH is non-zero, it is recommended - ! to set FOX_KEMPER_ML_RESTRAT_COEF=1.0. -MLE_USE_PBL_MLD = True ! [Boolean] default = False - ! If true, the MLE parameterization will use the mixed-layer depth provided by - ! the active PBL parameterization. If false, MLE will estimate a MLD based on a - ! density difference with the surface using the parameter MLE_DENSITY_DIFF. -MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 - ! The time-scale for a running-mean filter applied to the mixed-layer depth used - ! in the MLE restratification parameterization. When the MLD deepens below the - ! current running-mean the running-mean is instantaneously set to the current - ! MLD. -MLE_MLD_DECAY_TIME2 = 0.0 ! [s] default = 0.0 - ! The time-scale for a running-mean filter applied to the filtered mixed-layer - ! depth used in a second MLE restratification parameterization. When the MLD - ! deepens below the current running-mean the running-mean is instantaneously set - ! to the current MLD. -MLE_TAIL_DH = 0.0 ! [nondim] default = 0.0 - ! Fraction by which to extend the mixed-layer restratification depth used for a - ! smoother stream function at the base of the mixed-layer. -MLE_MLD_STRETCH = 1.0 ! [nondim] default = 1.0 - ! A scaling coefficient for stretching/shrinking the MLD used in the MLE scheme. - ! This simply multiplies MLD wherever used. -KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0 - ! A small viscosity that sets a floor on the momentum mixing rate during - ! restratification. If this is positive, it will prevent some possible - ! divisions by zero even if ustar, RESTRAT_USTAR_MIN, and f are all 0. -RESTRAT_USTAR_MIN = 1.45842E-18 ! [m s-1] default = 1.45842E-18 - ! The minimum value of ustar that will be used by the mixed layer - ! restratification module. This can be tiny, but if this is greater than 0, it - ! will prevent divisions by zero when f and KV_RESTRAT are zero. - -! === module MOM_diagnostics === -DIAG_EBT_MONO_N2_COLUMN_FRACTION = 0.0 ! [nondim] default = 0.0 - ! The lower fraction of water column over which N2 is limited as monotonic for - ! the purposes of calculating the equivalent barotropic wave speed. -DIAG_EBT_MONO_N2_DEPTH = -1.0 ! [m] default = -1.0 - ! The depth below which N2 is limited as monotonic for the purposes of - ! calculating the equivalent barotropic wave speed. - -! === module MOM_diabatic_driver === -! The following parameters are used for diabatic processes. -USE_LEGACY_DIABATIC_DRIVER = False ! [Boolean] default = True - ! If true, use a legacy version of the diabatic subroutine. This is temporary - ! and is needed to avoid change in answers. -ENERGETICS_SFC_PBL = True ! [Boolean] default = False - ! If true, use an implied energetics planetary boundary layer scheme to - ! determine the diffusivity and viscosity in the surface boundary layer. -EPBL_IS_ADDITIVE = False ! [Boolean] default = True - ! If true, the diffusivity from ePBL is added to all other diffusivities. - ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. -PRANDTL_EPBL = 1.0 ! [nondim] default = 1.0 - ! The Prandtl number used by ePBL to convert vertical diffusivities into - ! viscosities. -INTERNAL_TIDES = False ! [Boolean] default = False - ! If true, use the code that advances a separate set of equations for the - ! internal tide energy density. -MASSLESS_MATCH_TARGETS = True ! [Boolean] default = True - ! If true, the temperature and salinity of massless layers are kept consistent - ! with their target densities. Otherwise the properties of massless layers - ! evolve diffusively to match massive neighboring layers. -AGGREGATE_FW_FORCING = True ! [Boolean] default = True - ! If true, the net incoming and outgoing fresh water fluxes are combined and - ! applied as either incoming or outgoing depending on the sign of the net. If - ! false, the net incoming fresh water flux is added to the model and thereafter - ! the net outgoing is removed from the topmost non-vanished layers of the - ! updated state. -MIX_BOUNDARY_TRACERS = True ! [Boolean] default = True - ! If true, mix the passive tracers in massless layers at the bottom into the - ! interior as though a diffusivity of KD_MIN_TR were operating. -MIX_BOUNDARY_TRACER_ALE = False ! [Boolean] default = False - ! If true and in ALE mode, mix the passive tracers in massless layers at the - ! bottom into the interior as though a diffusivity of KD_MIN_TR were operating. -KD_MIN_TR = 1.0E-07 ! [m2 s-1] default = 1.0E-07 - ! A minimal diffusivity that should always be applied to tracers, especially in - ! massless layers near the bottom. The default is 0.1*KD. -KD_BBL_TR = 0.0 ! [m2 s-1] default = 0.0 - ! A bottom boundary layer tracer diffusivity that will allow for explicitly - ! specified bottom fluxes. The entrainment at the bottom is at least - ! sqrt(Kd_BBL_tr*dt) over the same distance. -TRACER_TRIDIAG = False ! [Boolean] default = False - ! If true, use the passive tracer tridiagonal solver for T and S -MINIMUM_FORCING_DEPTH = 0.001 ! [m] default = 0.001 - ! The smallest depth over which forcing can be applied. This only takes effect - ! when near-surface layers become thin relative to this scale, in which case the - ! forcing tendencies scaled down by distributing the forcing over this depth - ! scale. -EVAP_CFL_LIMIT = 0.8 ! [nondim] default = 0.8 - ! The largest fraction of a layer than can be lost to forcing (e.g. evaporation, - ! sea-ice formation) in one time-step. The unused mass loss is passed down - ! through the column. -MLD_EN_VALS = 3*0.0 ! [J/m2] default = 0.0 - ! The energy values used to compute MLDs. If not set (or all set to 0.), the - ! default will overwrite to 25., 2500., 250000. -DIAG_MLD_DENSITY_DIFF = 0.1 ! [kg/m3] default = 0.1 - ! The density difference used to determine a diagnostic mixed layer depth, - ! MLD_user, following the definition of Levitus 1982. The MLD is the depth at - ! which the density is larger than the surface density by the specified amount. -DIAG_DEPTH_SUBML_N2 = 50.0 ! [m] default = 50.0 - ! The distance over which to calculate a diagnostic of the stratification at the - ! base of the mixed layer. - -! === module MOM_CVMix_KPP === -! This is the MOM wrapper to CVMix:KPP -! See http://cvmix.github.io/ -USE_KPP = False ! [Boolean] default = False - ! If true, turns on the [CVMix] KPP scheme of Large et al., 1994, to calculate - ! diffusivities and non-local transport in the OBL. - -! === module MOM_CVMix_conv === -! Parameterization of enhanced mixing due to convection via CVMix -USE_CVMix_CONVECTION = False ! [Boolean] default = False - ! If true, turns on the enhanced mixing due to convection via CVMix. This scheme - ! increases diapycnal diffs./viscs. at statically unstable interfaces. Relevant - ! parameters are contained in the CVMix_CONVECTION% parameter block. - -! === module MOM_geothermal === -GEOTHERMAL_SCALE = 0.0 ! [W m-2 or various] default = 0.0 - ! The constant geothermal heat flux, a rescaling factor for the heat flux read - ! from GEOTHERMAL_FILE, or 0 to disable the geothermal heating. - -! === module MOM_set_diffusivity === -FLUX_RI_MAX = 0.2 ! [nondim] default = 0.2 - ! The flux Richardson number where the stratification is large enough that N2 > - ! omega2. The full expression for the Flux Richardson number is usually - ! FLUX_RI_MAX*N2/(N2+OMEGA2). -SET_DIFF_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the order of arithmetic and expressions in the set diffusivity - ! calculations. Values below 20190101 recover the answers from the end of 2018, - ! while higher values use updated and more robust forms of the same expressions. - -! === module MOM_tidal_mixing === -! Vertical Tidal Mixing Parameterization -USE_CVMix_TIDAL = False ! [Boolean] default = False - ! If true, turns on tidal mixing via CVMix -INT_TIDE_DISSIPATION = False ! [Boolean] default = False - ! If true, use an internal tidal dissipation scheme to drive diapycnal mixing, - ! along the lines of St. Laurent et al. (2002) and Simmons et al. (2004). -ML_RADIATION = False ! [Boolean] default = False - ! If true, allow a fraction of TKE available from wind work to penetrate below - ! the base of the mixed layer with a vertical decay scale determined by the - ! minimum of: (1) The depth of the mixed layer, (2) an Ekman length scale. -BBL_EFFIC = 0.0 ! [nondim] default = 0.2 - ! The efficiency with which the energy extracted by bottom drag drives BBL - ! diffusion. This is only used if BOTTOMDRAGLAW is true. -BBL_MIXING_MAX_DECAY = 200.0 ! [m] default = 200.0 - ! The maximum decay scale for the BBL diffusion, or 0 to allow the mixing to - ! penetrate as far as stratification and rotation permit. The default for now - ! is 200 m. This is only used if BOTTOMDRAGLAW is true. -BBL_MIXING_AS_MAX = False ! [Boolean] default = True - ! If true, take the maximum of the diffusivity from the BBL mixing and the other - ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added. -USE_LOTW_BBL_DIFFUSIVITY = False ! [Boolean] default = False - ! If true, uses a simple, imprecise but non-coordinate dependent, model of BBL - ! mixing diffusivity based on Law of the Wall. Otherwise, uses the original BBL - ! scheme. -DZ_BBL_AVG_MIN = 0.0 ! [m] default = 0.0 - ! A minimal distance over which to average to determine the average bottom - ! boundary layer density. -SIMPLE_TKE_TO_KD = False ! [Boolean] default = False - ! If true, uses a simple estimate of Kd/TKE that will work for arbitrary - ! vertical coordinates. If false, calculates Kd/TKE and bounds based on exact - ! energetics for an isopycnal layer-formulation. - -! === module MOM_bkgnd_mixing === -! Adding static vertical background mixing coefficients -KD = 1.0E-06 ! [m2 s-1] default = 0.0 - ! The background diapycnal diffusivity of density in the interior. Zero or the - ! molecular value, ~1e-7 m2 s-1, may be used. -KD_MIN = 2.0E-07 ! [m2 s-1] default = 1.0E-08 - ! The minimum diapycnal diffusivity. -BRYAN_LEWIS_DIFFUSIVITY = False ! [Boolean] default = False - ! If true, use a Bryan & Lewis (JGR 1979) like tanh profile of background - ! diapycnal diffusivity with depth. This is done via CVMix. -HORIZ_VARYING_BACKGROUND = False ! [Boolean] default = False - ! If true, apply vertically uniform, latitude-dependent background diffusivity, - ! as described in Danabasoglu et al., 2012 -PRANDTL_BKGND = 1.0 ! [nondim] default = 1.0 - ! Turbulent Prandtl number used to convert vertical background diffusivities - ! into viscosities. -HENYEY_IGW_BACKGROUND = False ! [Boolean] default = False - ! If true, use a latitude-dependent scaling for the near surface background - ! diffusivity, as described in Harrison & Hallberg, JPO 2008. -KD_TANH_LAT_FN = False ! [Boolean] default = False - ! If true, use a tanh dependence of Kd_sfc on latitude, like CM2.1/CM2M. There - ! is no physical justification for this form, and it can not be used with - ! HENYEY_IGW_BACKGROUND. -KD_MAX = -1.0 ! [m2 s-1] default = -1.0 - ! The maximum permitted increment for the diapycnal diffusivity from TKE-based - ! parameterizations, or a negative value for no limit. -KD_ADD = 0.0 ! [m2 s-1] default = 0.0 - ! A uniform diapycnal diffusivity that is added everywhere without any filtering - ! or scaling. -USER_CHANGE_DIFFUSIVITY = False ! [Boolean] default = False - ! If true, call user-defined code to change the diffusivity. -DISSIPATION_MIN = 0.0 ! [W m-3] default = 0.0 - ! The minimum dissipation by which to determine a lower bound of Kd (a floor). -DISSIPATION_N0 = 0.0 ! [W m-3] default = 0.0 - ! The intercept when N=0 of the N-dependent expression used to set a minimum - ! dissipation by which to determine a lower bound of Kd (a floor): A in eps_min - ! = A + B*N. -DISSIPATION_N1 = 0.0 ! [J m-3] default = 0.0 - ! The coefficient multiplying N, following Gargett, used to set a minimum - ! dissipation by which to determine a lower bound of Kd (a floor): B in eps_min - ! = A + B*N -DISSIPATION_KD_MIN = 0.0 ! [m2 s-1] default = 0.0 - ! The minimum vertical diffusivity applied as a floor. -DOUBLE_DIFFUSION = True ! [Boolean] default = False - ! If true, increase diffusivites for temperature or salinity based on the - ! double-diffusive parameterization described in Large et al. (1994). -MAX_RRHO_SALT_FINGERS = 2.55 ! [nondim] default = 2.55 - ! Maximum density ratio for salt fingering regime. -MAX_SALT_DIFF_SALT_FINGERS = 1.0E-04 ! [m2 s-1] default = 1.0E-04 - ! Maximum salt diffusivity for salt fingering regime. -KV_MOLECULAR = 1.5E-06 ! [m2 s-1] default = 1.5E-06 - ! Molecular viscosity for calculation of fluxes under double-diffusive - ! convection. - -! === module MOM_kappa_shear === -! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 -USE_JACKSON_PARAM = True ! [Boolean] default = False - ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing - ! parameterization. -VERTEX_SHEAR = False ! [Boolean] default = False - ! If true, do the calculations of the shear-driven mixing at the cell vertices - ! (i.e., the vorticity points). -RINO_CRIT = 0.25 ! [nondim] default = 0.25 - ! The critical Richardson number for shear mixing. -SHEARMIX_RATE = 0.089 ! [nondim] default = 0.089 - ! A nondimensional rate scale for shear-driven entrainment. Jackson et al find - ! values in the range of 0.085-0.089. -MAX_RINO_IT = 25 ! [nondim] default = 50 - ! The maximum number of iterations that may be used to estimate the Richardson - ! number driven mixing. -KD_KAPPA_SHEAR_0 = 1.0E-06 ! [m2 s-1] default = 1.0E-06 - ! The background diffusivity that is used to smooth the density and shear - ! profiles before solving for the diffusivities. The default is the greater of - ! KD and 1e-7 m2 s-1. -KD_SEED_KAPPA_SHEAR = 1.0 ! [m2 s-1] default = 1.0 - ! A moderately large seed value of diapycnal diffusivity that is used as a - ! starting turbulent diffusivity in the iterations to find an energetically - ! constrained solution for the shear-driven diffusivity. -KD_TRUNC_KAPPA_SHEAR = 1.0E-08 ! [m2 s-1] default = 1.0E-08 - ! The value of shear-driven diffusivity that is considered negligible and is - ! rounded down to 0. The default is 1% of KD_KAPPA_SHEAR_0. -FRI_CURVATURE = -0.97 ! [nondim] default = -0.97 - ! The nondimensional curvature of the function of the Richardson number in the - ! kappa source term in the Jackson et al. scheme. -TKE_N_DECAY_CONST = 0.24 ! [nondim] default = 0.24 - ! The coefficient for the decay of TKE due to stratification (i.e. proportional - ! to N*tke). The values found by Jackson et al. are 0.24-0.28. -TKE_SHEAR_DECAY_CONST = 0.14 ! [nondim] default = 0.14 - ! The coefficient for the decay of TKE due to shear (i.e. proportional to - ! |S|*tke). The values found by Jackson et al. are 0.14-0.12. -KAPPA_BUOY_SCALE_COEF = 0.82 ! [nondim] default = 0.82 - ! The coefficient for the buoyancy length scale in the kappa equation. The - ! values found by Jackson et al. are in the range of 0.81-0.86. -KAPPA_N_OVER_S_SCALE_COEF2 = 0.0 ! [nondim] default = 0.0 - ! The square of the ratio of the coefficients of the buoyancy and shear scales - ! in the diffusivity equation, Set this to 0 (the default) to eliminate the - ! shear scale. This is only used if USE_JACKSON_PARAM is true. -KAPPA_SHEAR_TOL_ERR = 0.1 ! [nondim] default = 0.1 - ! The fractional error in kappa that is tolerated. Iteration stops when changes - ! between subsequent iterations are smaller than this everywhere in a column. - ! The peak diffusivities usually converge most rapidly, and have much smaller - ! errors than this. -TKE_BACKGROUND = 0.0 ! [m2 s-2] default = 0.0 - ! A background level of TKE used in the first iteration of the kappa equation. - ! TKE_BACKGROUND could be 0. -KAPPA_SHEAR_ELIM_MASSLESS = True ! [Boolean] default = True - ! If true, massless layers are merged with neighboring massive layers in this - ! calculation. The default is true and I can think of no good reason why it - ! should be false. This is only used if USE_JACKSON_PARAM is true. -MAX_KAPPA_SHEAR_IT = 13 ! default = 13 - ! The maximum number of iterations that may be used to estimate the - ! time-averaged diffusivity. -KAPPA_SHEAR_MAX_KAP_SRC_CHG = 10.0 ! [nondim] default = 10.0 - ! The maximum permitted increase in the kappa source within an iteration - ! relative to the local source; this must be greater than 1. The lower limit - ! for the permitted fractional decrease is (1 - 0.5/kappa_src_max_chg). These - ! limits could perhaps be made dynamic with an improved iterative solver. -KAPPA_SHEAR_ITER_BUG = False ! [Boolean] default = False - ! If true, use an older, dimensionally inconsistent estimate of the derivative - ! of diffusivity with energy in the Newton's method iteration. The bug causes - ! undercorrections when dz > 1 m. -KAPPA_SHEAR_ALL_LAYER_TKE_BUG = False ! [Boolean] default = False - ! If true, report back the latest estimate of TKE instead of the time average - ! TKE when there is mass in all layers. Otherwise always report the time - ! averaged TKE, as is currently done when there are some massless layers. -USE_RESTRICTIVE_TOLERANCE_CHECK = False ! [Boolean] default = False - ! If true, uses the more restrictive tolerance check to determine if a timestep - ! is acceptable for the KS_it outer iteration loop. False uses the original - ! less restrictive check. - -! === module MOM_CVMix_shear === -! Parameterization of shear-driven turbulence via CVMix (various options) -USE_LMD94 = False ! [Boolean] default = False - ! If true, use the Large-McWilliams-Doney (JGR 1994) shear mixing - ! parameterization. -USE_PP81 = False ! [Boolean] default = False - ! If true, use the Pacanowski and Philander (JPO 1981) shear mixing - ! parameterization. - -! === module MOM_CVMix_ddiff === -! Parameterization of mixing due to double diffusion processes via CVMix -USE_CVMIX_DDIFF = False ! [Boolean] default = False - ! If true, turns on double diffusive processes via CVMix. Note that double - ! diffusive processes on viscosity are ignored in CVMix, see - ! http://cvmix.github.io/ for justification. - -! === module MOM_diabatic_aux === -! The following parameters are used for auxiliary diabatic processes. -RECLAIM_FRAZIL = True ! [Boolean] default = True - ! If true, try to use any frazil heat deficit to cool any overlying layers down - ! to the freezing point, thereby avoiding the creation of thin ice when the SST - ! is above the freezing point. -SALT_EXTRACTION_LIMIT = 0.9999 ! [nondim] default = 0.9999 - ! An upper limit on the fraction of the salt in a layer that can be lost to the - ! net surface salt fluxes within a timestep. -PRESSURE_DEPENDENT_FRAZIL = True ! [Boolean] default = False - ! If true, use a pressure dependent freezing temperature when making frazil. The - ! default is false, which will be faster but is inappropriate with ice-shelf - ! cavities. -IGNORE_FLUXES_OVER_LAND = True ! [Boolean] default = False - ! If true, the model does not check if fluxes are being applied over land - ! points. This is needed when the ocean is coupled with ice shelves and sea ice, - ! since the sea ice mask needs to be different than the ocean mask to avoid sea - ! ice formation under ice shelves. This flag only works when use_ePBL = True. -DO_RIVERMIX = True ! [Boolean] default = False - ! If true, apply additional mixing wherever there is runoff, so that it is mixed - ! down to RIVERMIX_DEPTH if the ocean is that deep. -RIVERMIX_DEPTH = 5.0 ! [m] default = 0.0 - ! The depth to which rivers are mixed if DO_RIVERMIX is defined. -USE_RIVER_HEAT_CONTENT = False ! [Boolean] default = False - ! If true, use the fluxes%runoff_Hflx field to set the heat carried by runoff, - ! instead of using SST*CP*liq_runoff. -USE_CALVING_HEAT_CONTENT = False ! [Boolean] default = False - ! If true, use the fluxes%calving_Hflx field to set the heat carried by runoff, - ! instead of using SST*CP*froz_runoff. -DO_BRINE_PLUME = False ! [Boolean] default = False - ! If true, use a brine plume parameterization from Nguyen et al., 2009. -VAR_PEN_SW = True ! [Boolean] default = False - ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine - ! the e-folding depth of incoming short wave radiation. -CHL_FROM_FILE = False ! [Boolean] default = True - ! If true, chl_a is read from a file. - -! === module MOM_energetic_PBL === -ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0 - ! When setting the decay scale for turbulence, use this fraction of the absolute - ! rotation rate blended with the local value of f, as sqrt((1-of)*f^2 + - ! of*4*omega^2). -EKMAN_SCALE_COEF = 1.0 ! [nondim] default = 1.0 - ! A nondimensional scaling factor controlling the inhibition of the diffusive - ! length scale by rotation. Making this larger decreases the PBL diffusivity. -EPBL_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the order of arithmetic and expressions in the energetic PBL - ! calculations. Values below 20190101 recover the answers from the end of 2018, - ! while higher values use updated and more robust forms of the same expressions. -EPBL_ORIGINAL_PE_CALC = True ! [Boolean] default = True - ! If true, the ePBL code uses the original form of the potential energy change - ! code. Otherwise, the newer version that can work with successive increments - ! to the diffusivity in upward or downward passes is used. -MKE_TO_TKE_EFFIC = 0.0 ! [nondim] default = 0.0 - ! The efficiency with which mean kinetic energy released by mechanically forced - ! entrainment of the mixed layer is converted to turbulent kinetic energy. -TKE_DECAY = 0.001 ! [nondim] default = 2.5 - ! TKE_DECAY relates the vertical rate of decay of the TKE available for - ! mechanical entrainment to the natural Ekman depth. -EPBL_MSTAR_SCHEME = "REICHL_H18" ! default = "CONSTANT" - ! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are: - ! CONSTANT - Use a fixed mstar given by MSTAR - ! OM4 - Use L_Ekman/L_Obukhov in the stabilizing limit, as in OM4 - ! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018. -MSTAR_CAP = 10.0 ! [nondim] default = -1.0 - ! If this value is positive, it sets the maximum value of mstar allowed in ePBL. - ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT). -RH18_MSTAR_CN1 = 0.275 ! [nondim] default = 0.275 - ! MSTAR_N coefficient 1 (outter-most coefficient for fit). The value of 0.275 is - ! given in RH18. Increasing this coefficient increases MSTAR for all values of - ! Hf/ust, but more effectively at low values (weakly developed OSBLs). -RH18_MSTAR_CN2 = 8.0 ! [nondim] default = 8.0 - ! MSTAR_N coefficient 2 (coefficient outside of exponential decay). The value of - ! 8.0 is given in RH18. Increasing this coefficient increases MSTAR for all - ! values of HF/ust, with a much more even effect across a wide range of Hf/ust - ! than CN1. -RH18_MSTAR_CN3 = -6.0 ! [nondim] default = -5.0 - ! MSTAR_N coefficient 3 (exponential decay coefficient). The value of -5.0 is - ! given in RH18. Increasing this increases how quickly the value of MSTAR - ! decreases as Hf/ust increases. -RH18_MSTAR_CS1 = 0.2 ! [nondim] default = 0.2 - ! MSTAR_S coefficient for RH18 in stabilizing limit. The value of 0.2 is given - ! in RH18 and increasing it increases MSTAR in the presence of a stabilizing - ! surface buoyancy flux. -RH18_MSTAR_CS2 = 0.4 ! [nondim] default = 0.4 - ! MSTAR_S exponent for RH18 in stabilizing limit. The value of 0.4 is given in - ! RH18 and increasing it increases MSTAR exponentially in the presence of a - ! stabilizing surface buoyancy flux. -NSTAR = 0.06 ! [nondim] default = 0.2 - ! The portion of the buoyant potential energy imparted by surface fluxes that is - ! available to drive entrainment at the base of mixed layer when that energy is - ! positive. -MSTAR_CONV_ADJ = 0.66 ! [nondim] default = 0.0 - ! Coefficient used for reducing mstar during convection due to reduction of - ! stable density gradient. -USE_MLD_ITERATION = True ! [Boolean] default = True - ! A logical that specifies whether or not to use the distance to the bottom of - ! the actively turbulent boundary layer to help set the EPBL length scale. -EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1 - ! A scale for the mixing length in the transition layer at the edge of the - ! boundary layer as a fraction of the boundary layer thickness. -MLD_ITERATION_GUESS = False ! [Boolean] default = False - ! If true, use the previous timestep MLD as a first guess in the MLD iteration, - ! otherwise use half the ocean depth as the first guess of the boundary layer - ! depth. The default is false to facilitate reproducibility. -EPBL_MLD_TOLERANCE = 1.0 ! [meter] default = 1.0 - ! The tolerance for the iteratively determined mixed layer depth. This is only - ! used with USE_MLD_ITERATION. -EPBL_MLD_BISECTION = True ! [Boolean] default = False - ! If true, use bisection with the iterative determination of the self-consistent - ! mixed layer depth. Otherwise use the false position after a maximum and - ! minimum bound have been evaluated and the returned value or bisection before - ! this. -EPBL_MLD_MAX_ITS = 20 ! default = 20 - ! The maximum number of iterations that can be used to find a self-consistent - ! mixed layer depth. If EPBL_MLD_BISECTION is true, the maximum number - ! iteractions needed is set by Depth/2^MAX_ITS < EPBL_MLD_TOLERANCE. -EPBL_MIN_MIX_LEN = 0.0 ! [meter] default = 0.0 - ! The minimum mixing length scale that will be used by ePBL. The default (0) - ! does not set a minimum. -MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0 - ! The exponent applied to the ratio of the distance to the MLD and the MLD depth - ! which determines the shape of the mixing length. This is only used if - ! USE_MLD_ITERATION is True. -EPBL_VEL_SCALE_SCHEME = "REICHL_H18" ! default = "CUBE_ROOT_TKE" - ! Selects the method for translating TKE into turbulent velocities. Valid values - ! are: - ! CUBE_ROOT_TKE - A constant times the cube root of remaining TKE. - ! REICHL_H18 - Use the scheme based on a combination of w* and v* as - ! documented in Reichl & Hallberg, 2018. -WSTAR_USTAR_COEF = 15.0 ! [nondim] default = 1.0 - ! A ratio relating the efficiency with which convectively released energy is - ! converted to a turbulent velocity, relative to mechanically forced TKE. Making - ! this larger increases the BL diffusivity -EPBL_VEL_SCALE_FACTOR = 0.5477 ! [nondim] default = 1.0 - ! An overall nondimensional scaling factor for wT. Making this larger increases - ! the PBL diffusivity. -VSTAR_SURF_FAC = 1.8258 ! [nondim] default = 1.2 - ! The proportionality times ustar to set vstar at the surface. -USE_LA_LI2016 = True ! [Boolean] default = False - ! A logical to use the Li et al. 2016 (submitted) formula to determine the - ! Langmuir number. -EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" - ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. - ! Valid values are: - ! NONE - Do not do any extra mixing due to Langmuir turbulence - ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir - ! turbulence - ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other - ! contributions -LT_ENHANCE_COEF = 0.1056 ! [nondim] default = 0.447 - ! Coefficient for Langmuir enhancement of mstar -LT_ENHANCE_EXP = -1.0 ! [nondim] default = -1.33 - ! Exponent for Langmuir enhancementt of mstar -LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 - ! Coefficient for modification of Langmuir number due to MLD approaching Ekman - ! depth. -LT_MOD_LAC2 = 0.0 ! [nondim] default = 0.0 - ! Coefficient for modification of Langmuir number due to MLD approaching stable - ! Obukhov depth. -LT_MOD_LAC3 = 0.0 ! [nondim] default = 0.0 - ! Coefficient for modification of Langmuir number due to MLD approaching - ! unstable Obukhov depth. -LT_MOD_LAC4 = 0.8 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! stable Obukhov depth. -LT_MOD_LAC5 = 0.8 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! unstable Obukhov depth. -!EPBL_USTAR_MIN = 1.45842E-18 ! [m s-1] - ! The (tiny) minimum friction velocity used within the ePBL code, derived from - ! OMEGA and ANGSTROM. - -! === module MOM_regularize_layers === -REGULARIZE_SURFACE_LAYERS = False ! [Boolean] default = False - ! If defined, vertically restructure the near-surface layers when they have too - ! much lateral variations to allow for sensible lateral barotropic transports. - -! === module MOM_opacity === -OPACITY_SCHEME = "MANIZZA_05" ! default = "MANIZZA_05" - ! This character string specifies how chlorophyll concentrations are translated - ! into opacities. Currently valid options include: - ! MANIZZA_05 - Use Manizza et al., GRL, 2005. - ! MOREL_88 - Use Morel, JGR, 1988. -BLUE_FRAC_SW = 0.5 ! [nondim] default = 0.5 - ! The fraction of the penetrating shortwave radiation that is in the blue band. -PEN_SW_NBANDS = 3 ! default = 1 - ! The number of bands of penetrating shortwave radiation. -OPTICS_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the order of arithmetic and expressions in the optics - ! calculations. Values below 20190101 recover the answers from the end of 2018, - ! while higher values use updated and more robust forms of the same expressions. -PEN_SW_FLUX_ABSORB = 2.5E-11 ! [degC m s-1] default = 2.5E-11 - ! A minimum remaining shortwave heating rate that will be simply absorbed in the - ! next sufficiently thick layers for computational efficiency, instead of - ! continuing to penetrate. The default, 2.5e-11 degC m s-1, is about 1e-4 W m-2 - ! or 0.08 degC m century-1, but 0 is also a valid value. -PEN_SW_ABSORB_MINTHICK = 1.0 ! [m] default = 1.0 - ! A thickness that is used to absorb the remaining penetrating shortwave heat - ! flux when it drops below PEN_SW_FLUX_ABSORB. -OPACITY_LAND_VALUE = 10.0 ! [m-1] default = 10.0 - ! The value to use for opacity over land. The default is 10 m-1 - a value for - ! muddy water. - -! === module MOM_tracer_advect === -TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" - ! The horizontal transport scheme for tracers: - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) - ! PPM - Piecewise Parabolic Method (Colella-Woodward) - -! === module MOM_tracer_hor_diff === -KHTR = 0.0 ! [m2 s-1] default = 0.0 - ! The background along-isopycnal tracer diffusivity. -KHTR_USE_EBT_STRUCT = False ! [Boolean] default = False - ! If true, uses the equivalent barotropic structure as the vertical structure of - ! the tracer diffusivity. -KHTR_MIN = 0.0 ! [m2 s-1] default = 0.0 - ! The minimum along-isopycnal tracer diffusivity. -KHTR_MAX = 0.0 ! [m2 s-1] default = 0.0 - ! The maximum along-isopycnal tracer diffusivity. -KHTR_PASSIVITY_COEFF = 0.0 ! [nondim] default = 0.0 - ! The coefficient that scales deformation radius over grid-spacing in passivity, - ! where passivity is the ratio between along isopycnal mixing of tracers to - ! thickness mixing. A non-zero value enables this parameterization. -KHTR_PASSIVITY_MIN = 0.5 ! [nondim] default = 0.5 - ! The minimum passivity which is the ratio between along isopycnal mixing of - ! tracers to thickness mixing. -DIFFUSE_ML_TO_INTERIOR = False ! [Boolean] default = False - ! If true, enable epipycnal mixing between the surface boundary layer and the - ! interior. -CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False - ! If true, use enough iterations the diffusion to ensure that the diffusive - ! equivalent of the CFL limit is not violated. If false, always use the greater - ! of 1 or MAX_TR_DIFFUSION_CFL iteration. -MAX_TR_DIFFUSION_CFL = -1.0 ! [nondim] default = -1.0 - ! If positive, locally limit the along-isopycnal tracer diffusivity to keep the - ! diffusive CFL locally at or below this value. The number of diffusive - ! iterations is often this value or the next greater integer. -RECALC_NEUTRAL_SURF = False ! [Boolean] default = False - ! If true, then recalculate the neutral surfaces if the - ! diffusive CFL is exceeded. If false, assume that the - ! positions of the surfaces do not change - -! === module MOM_neutral_diffusion === -! This module implements neutral diffusion of tracers -USE_NEUTRAL_DIFFUSION = False ! [Boolean] default = False - ! If true, enables the neutral diffusion module. - -! === module MOM_hor_bnd_diffusion === -! This module implements horizontal diffusion of tracers near boundaries -USE_HORIZONTAL_BOUNDARY_DIFFUSION = False ! [Boolean] default = False - ! If true, enables the horizonal boundary tracer's diffusion module. -OBSOLETE_DIAGNOSTIC_IS_FATAL = True ! [Boolean] default = True - ! If an obsolete diagnostic variable appears in the diag_table, cause a FATAL - ! error rather than issue a WARNING. - -! === module MOM_sum_output === -CALCULATE_APE = False ! [Boolean] default = True - ! If true, calculate the available potential energy of the interfaces. Setting - ! this to false reduces the memory footprint of high-PE-count models - ! dramatically. -WRITE_STOCKS = True ! [Boolean] default = True - ! If true, write the integrated tracer amounts to stdout when the energy files - ! are written. -MAXTRUNC = 1000 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 - ! to stop if there is any truncation of velocities. -MAX_ENERGY = 0.0 ! [m2 s-2] default = 0.0 - ! The maximum permitted average energy per unit mass; the model will be stopped - ! if there is more energy than this. If zero or negative, this is set to - ! 10*MAXVEL^2. -ENERGYFILE = "ocean.stats" ! default = "ocean.stats" - ! The file to use to write the energies and globally summed diagnostics. -DATE_STAMPED_STDOUT = True ! [Boolean] default = True - ! If true, use dates (not times) in messages to stdout -TIMEUNIT = 8.64E+04 ! [s] default = 8.64E+04 - ! The time unit in seconds a number of input fields -ENERGYSAVEDAYS = 1.0 ! [days] default = 1.0 - ! The interval in units of TIMEUNIT between saves of the energies of the run and - ! other globally summed diagnostics. -ENERGYSAVEDAYS_GEOMETRIC = 0.0 ! [days] default = 0.0 - ! The starting interval in units of TIMEUNIT for the first call to save the - ! energies of the run and other globally summed diagnostics. The interval - ! increases by a factor of 2. after each call to write_energy. - -! === module ocean_stochastics_init === -DO_SPPT = False ! [Boolean] default = False - ! If true, then stochastically perturb the thermodynamic tendemcies of T,S, amd - ! h. Amplitude and correlations are controlled by the nam_stoch namelist in the - ! UFS model only. -PERT_EPBL = False ! [Boolean] default = False - ! If true, then stochastically perturb the kinetic energy production and - ! dissipation terms. Amplitude and correlations are controlled by the nam_stoch - ! namelist in the UFS model only. - -! === module ocean_model_init === -SINGLE_STEPPING_CALL = True ! [Boolean] default = True - ! If true, advance the state of MOM with a single step including both dynamics - ! and thermodynamics. If false, the two phases are advanced with separate - ! calls. -RESTART_CONTROL = 1 ! default = 1 - ! An integer whose bits encode which restart files are written. Add 2 (bit 1) - ! for a time-stamped file, and odd (bit 0) for a non-time-stamped file. A - ! restart file will be saved at the end of the run segment for any non-negative - ! value. -OCEAN_SURFACE_STAGGER = "C" ! default = "C" - ! A case-insensitive character string to indicate the staggering of the surface - ! velocity field that is returned to the coupler. Valid values include 'A', - ! 'B', or 'C'. -ICEBERGS_APPLY_RIGID_BOUNDARY = False ! [Boolean] default = False - ! If true, allows icebergs to change boundary condition felt by ocean - -! === module MOM_surface_forcing === -LATENT_HEAT_FUSION = 3.34E+05 ! [J/kg] default = 3.34E+05 - ! The latent heat of fusion. -LATENT_HEAT_VAPORIZATION = 2.5E+06 ! [J/kg] default = 2.5E+06 - ! The latent heat of fusion. -MAX_P_SURF = 0.0 ! [Pa] default = -1.0 - ! The maximum surface pressure that can be exerted by the atmosphere and - ! floating sea-ice or ice shelves. This is needed because the FMS coupling - ! structure does not limit the water that can be frozen out of the ocean and the - ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a - ! negative value is used. -RESTORE_SALINITY = False ! [Boolean] default = False - ! If true, the coupled driver will add a globally-balanced fresh-water flux that - ! drives sea-surface salinity toward specified values. -RESTORE_TEMPERATURE = False ! [Boolean] default = False - ! If true, the coupled driver will add a heat flux that drives sea-surface - ! temperature toward specified values. -ADJUST_NET_SRESTORE_TO_ZERO = False ! [Boolean] default = False - ! If true, adjusts the salinity restoring seen to zero whether restoring is via - ! a salt flux or virtual precip. -ADJUST_NET_SRESTORE_BY_SCALING = False ! [Boolean] default = False - ! If true, adjustments to salt restoring to achieve zero net are made by scaling - ! values without moving the zero contour. -ADJUST_NET_FRESH_WATER_TO_ZERO = False ! [Boolean] default = False - ! If true, adjusts the net fresh-water forcing seen by the ocean (including - ! restoring) to zero. -ADJUST_NET_FRESH_WATER_BY_SCALING = False ! [Boolean] default = False - ! If true, adjustments to net fresh water to achieve zero net are made by - ! scaling values without moving the zero contour. -ICE_SALT_CONCENTRATION = 0.005 ! [kg/kg] default = 0.005 - ! The assumed sea-ice salinity needed to reverse engineer the melt flux (or - ! ice-ocean fresh-water flux). -USE_LIMITED_PATM_SSH = True ! [Boolean] default = True - ! If true, return the sea surface height with the correction for the atmospheric - ! (and sea-ice) pressure limited by max_p_surf instead of the full atmospheric - ! pressure. -APPROX_NET_MASS_SRC = False ! [Boolean] default = False - ! If true, use the net mass sources from the ice-ocean boundary type without any - ! further adjustments to drive the ocean dynamics. The actual net mass source - ! may differ due to internal corrections. -WIND_STAGGER = "C" ! default = "C" - ! A case-insensitive character string to indicate the staggering of the input - ! wind stress field. Valid values are 'A', 'B', or 'C'. -WIND_STRESS_MULTIPLIER = 1.0 ! [nondim] default = 1.0 - ! A factor multiplying the wind-stress given to the ocean by the coupler. This - ! is used for testing and should be =1.0 for any production runs. -CD_TIDES = 0.0018 ! [nondim] default = 1.0E-04 - ! The drag coefficient that applies to the tides. -READ_TIDEAMP = False ! [Boolean] default = False - ! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude - ! with INT_TIDE_DISSIPATION. -UTIDE = 0.0 ! [m s-1] default = 0.0 - ! The constant tidal amplitude used with INT_TIDE_DISSIPATION. -READ_GUST_2D = False ! [Boolean] default = False - ! If true, use a 2-dimensional gustiness supplied from an input file -GUST_CONST = 0.0 ! [Pa] default = 0.0 - ! The background gustiness in the winds. -SURFACE_FORCING_ANSWER_DATE = 99991231 ! default = 99991231 - ! The vintage of the order of arithmetic and expressions in the gustiness - ! calculations. Values below 20190101 recover the answers from the end of 2018, - ! while higher values use a simpler expression to calculate gustiness. -USTAR_GUSTLESS_BUG = False ! [Boolean] default = False - ! If true include a bug in the time-averaging of the gustless wind friction - ! velocity -USE_RIGID_SEA_ICE = True ! [Boolean] default = False - ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that - ! resist vertical motion. -SEA_ICE_MEAN_DENSITY = 900.0 ! [kg m-3] default = 900.0 - ! A typical density of sea ice, used with the kinematic viscosity, when - ! USE_RIGID_SEA_ICE is true. -SEA_ICE_VISCOSITY = 1.0E+09 ! [m2 s-1] default = 1.0E+09 - ! The kinematic viscosity of sufficiently thick sea ice for use in calculating - ! the rigidity of sea ice. -SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 - ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit - ! rigidity -ALLOW_ICEBERG_FLUX_DIAGNOSTICS = False ! [Boolean] default = False - ! If true, makes available diagnostics of fluxes from icebergs as seen by MOM6. -ALLOW_FLUX_ADJUSTMENTS = False ! [Boolean] default = False - ! If true, allows flux adjustments to specified via the data_table using the - ! component name 'OCN'. - -! === module MOM_restart === -USE_WAVES = False ! [Boolean] default = False - ! If true, enables surface wave modules. -WAVE_INTERFACE_ANSWER_DATE = 20221231 ! default = 20221231 - ! The vintage of the order of arithmetic and expressions in the surface wave - ! calculations. Values below 20230101 recover the answers from the end of 2022, - ! while higher values use updated and more robust forms of the same expressions: - ! < 20230101 - Original answers for wave interface routines - ! >= 20230101 - More robust expressions for Update_Stokes_Drift - ! >= 20230102 - More robust expressions for get_StokesSL_LiFoxKemper - ! >= 20230103 - More robust expressions for ust_2_u10_coare3p5 -LA_DEPTH_RATIO = 0.2 ! [nondim] default = 0.04 - ! The depth (normalized by BLD) to average Stokes drift over in Langmuir number - ! calculation, where La = sqrt(ust/Stokes). -LA_DEPTH_MIN = 0.1 ! [m] default = 0.1 - ! The minimum depth over which to average the Stokes drift in the Langmuir - ! number calculation. -VISCOSITY_AIR = 1.0E-06 ! [m2 s-1] default = 1.0E-06 - ! A typical viscosity of air at sea level, as used in wave calculations -VON_KARMAN_WAVES = 0.4 ! [nondim] default = 0.4 - ! The value the von Karman constant as used for surface wave calculations. -RHO_AIR = 1.225 ! [kg m-3] default = 1.225 - ! A typical density of air at sea level, as used in wave calculations -RHO_SFC_WAVES = 1035.0 ! [kg m-3] default = 1035.0 - ! A typical surface density of seawater, as used in wave calculations in - ! comparison with the density of air. The default is RHO_0. -WAVE_HEIGHT_SCALE_FACTOR = 0.0246 ! [s2 m-1] default = 0.0246 - ! A factor relating the square of the 10 m wind speed to the significant wave - ! height, with a default value based on the Pierson-Moskowitz spectrum. -CHARNOCK_MIN = 0.028 ! [nondim] default = 0.028 - ! The minimum value of the Charnock coefficient, which relates the square of the - ! air friction velocity divided by the gravitational acceleration to the wave - ! roughness length. -CHARNOCK_SLOPE_U10 = 0.0017 ! [s m-1] default = 0.0017 - ! The partial derivative of the Charnock coefficient with the 10 m wind speed. - ! Note that in eq. 13 of the Edson et al. 2013 describing the COARE 3.5 bulk - ! flux algorithm, this slope is given as 0.017. However, 0.0017 reproduces the - ! curve in their figure 6, so that is the default value used in MOM6. -CHARNOCK_0_WIND_INTERCEPT = -0.005 ! [nondim] default = -0.005 - ! The intercept of the fit for the Charnock coefficient in the limit of no wind. - ! Note that this can be negative because CHARNOCK_MIN will keep the final value - ! for the Charnock coefficient from being from being negative. - -! === module MOM_file_parser === -SEND_LOG_TO_STDOUT = False ! [Boolean] default = False - ! If true, all log messages are also sent to stdout. -DOCUMENT_FILE = "MOM_parameter_doc" ! default = "MOM_parameter_doc" - ! The basename for files where run-time parameters, their settings, units and - ! defaults are documented. Blank will disable all parameter documentation. -COMPLETE_DOCUMENTATION = True ! [Boolean] default = True - ! If true, all run-time parameters are documented in MOM_parameter_doc.all . -MINIMAL_DOCUMENTATION = True ! [Boolean] default = True - ! If true, non-default run-time parameters are documented in - ! MOM_parameter_doc.short . diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.debugging b/exps/NWA12.COBALT/MOM_parameter_doc.debugging deleted file mode 100644 index a54ab8109..000000000 --- a/exps/NWA12.COBALT/MOM_parameter_doc.debugging +++ /dev/null @@ -1,85 +0,0 @@ -! This file was written by the model and records the debugging parameters used at run-time. - -! === module MOM_unit_scaling === -! Parameters for doing unit scaling of variables. -Z_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! depths and heights. Valid values range from -300 to 300. -L_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! lateral distances. Valid values range from -300 to 300. -T_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! time. Valid values range from -300 to 300. -R_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! density. Valid values range from -300 to 300. -Q_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! heat content. Valid values range from -300 to 300. -C_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! temperature. Valid values range from -300 to 300. -S_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! salinity. Valid values range from -300 to 300. - -! === module MOM === -VERBOSITY = 2 ! default = 2 - ! Integer controlling level of messaging - ! 0 = Only FATAL messages - ! 2 = Only FATAL, WARNING, NOTE [default] - ! 9 = All) -DO_UNIT_TESTS = False ! [Boolean] default = False - ! If True, exercises unit tests at model start up. -DEBUG = False ! [Boolean] default = False - ! If true, write out verbose debugging data. -DEBUG_TRUNCATIONS = False ! [Boolean] default = False - ! If true, calculate all diagnostics that are useful for debugging truncations. -ROTATE_INDEX = False ! [Boolean] default = False - ! Enable rotation of the horizontal indices. -DEBUG_CHKSUMS = False ! [Boolean] default = False - ! If true, checksums are performed on arrays in the various vec_chksum routines. -DEBUG_REDUNDANT = False ! [Boolean] default = False - ! If true, debug redundant data points during calls to the various vec_chksum - ! routines. - -! === module MOM_verticalGrid === -! Parameters providing information about the vertical grid. -H_RESCALE_POWER = 0 ! [nondim] default = 0 - ! An integer power of 2 that is used to rescale the model's intenal units of - ! thickness. Valid values range from -300 to 300. - -! === module MOM_vert_friction === -U_TRUNC_FILE = "" ! default = "" - ! The absolute path to a file into which the accelerations leading to zonal - ! velocity truncations are written. Undefine this for efficiency if this - ! diagnostic is not needed. -V_TRUNC_FILE = "" ! default = "" - ! The absolute path to a file into which the accelerations leading to meridional - ! velocity truncations are written. Undefine this for efficiency if this - ! diagnostic is not needed. - -! === module MOM_barotropic === -DEBUG_BT = False ! [Boolean] default = False - ! If true, write out verbose debugging data within the barotropic time-stepping - ! loop. The data volume can be quite large if this is true. - -! === module MOM_diabatic_driver === -! The following parameters are used for diabatic processes. -DEBUG_CONSERVATION = False ! [Boolean] default = False - ! If true, monitor conservation and extrema. - -! === module MOM_kappa_shear === -! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 - -! === module MOM_surface_forcing === -CHECK_NO_LAND_FLUXES = False ! [Boolean] default = False - ! If true, checks that values from IOB fluxes are zero above land points (i.e. - ! G%mask2dT = 0). - -! === module MOM_file_parser === -REPORT_UNUSED_PARAMS = True ! [Boolean] default = True - ! If true, report any parameter lines that are not used in the run. -FATAL_UNUSED_PARAMS = False ! [Boolean] default = False - ! If true, kill the run if there are any unused parameters. diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.layout b/exps/NWA12.COBALT/MOM_parameter_doc.layout deleted file mode 100644 index 65585b2ef..000000000 --- a/exps/NWA12.COBALT/MOM_parameter_doc.layout +++ /dev/null @@ -1,67 +0,0 @@ -! This file was written by the model and records the layout parameters used at run-time. - -! === module MOM === -GLOBAL_INDEXING = False ! [Boolean] default = False - ! If true, use a global lateral indexing convention, so that corresponding - ! points on different processors have the same index. This does not work with - ! static memory. - -! === module MOM_domains === -!SYMMETRIC_MEMORY_ = True ! [Boolean] - ! If defined, the velocity point data domain includes every face of the - ! thickness points. In other words, some arrays are larger than others, - ! depending on where they are on the staggered grid. Also, the starting index - ! of the velocity-point arrays is usually 0, not 1. This can only be set at - ! compile time. -NONBLOCKING_UPDATES = False ! [Boolean] default = False - ! If true, non-blocking halo updates may be used. -THIN_HALO_UPDATES = True ! [Boolean] default = True - ! If true, optional arguments may be used to specify the width of the halos that - ! are updated with each call. -!STATIC_MEMORY_ = False ! [Boolean] - ! If STATIC_MEMORY_ is defined, the principle variables will have sizes that are - ! statically determined at compile time. Otherwise the sizes are not determined - ! until run time. The STATIC option is substantially faster, but does not allow - ! the PE count to be changed at run time. This can only be set at compile time. -MASKTABLE = "mask_table.854.50x50" ! default = "MOM_mask_table" - ! A text file to specify n_mask, layout and mask_list. This feature masks out - ! processors that contain only land points. The first line of mask_table is the - ! number of regions to be masked out. The second line is the layout of the model - ! and must be consistent with the actual model layout. The following (n_mask) - ! lines give the logical positions of the processors that are masked out. The - ! mask_table can be created by tools like check_mask. The following example of - ! mask_table masks out 2 processors, (1,2) and (3,6), out of the 24 in a 4x6 - ! layout: - ! 2 - ! 4,6 - ! 1,2 - ! 3,6 -NIPROC = 50 ! - ! The number of processors in the x-direction. With STATIC_MEMORY_ this is set - ! in MOM_memory.h at compile time. -NJPROC = 50 ! - ! The number of processors in the y-direction. With STATIC_MEMORY_ this is set - ! in MOM_memory.h at compile time. -LAYOUT = 50, 50 ! - ! The processor layout that was actually used. -IO_LAYOUT = 1, 1 ! default = 1 - ! The processor layout to be used, or 0,0 to automatically set the io_layout to - ! be the same as the layout. - -! === module MOM_grid === -! Parameters providing information about the lateral grid. -NIBLOCK = 1 ! default = 1 - ! The number of blocks in the x-direction on each processor (for openmp). -NJBLOCK = 1 ! default = 1 - ! The number of blocks in the y-direction on each processor (for openmp). - -! === module MOM_barotropic === -BT_USE_WIDE_HALOS = True ! [Boolean] default = True - ! If true, use wide halos and march in during the barotropic time stepping for - ! efficiency. -BTHALO = 0 ! default = 0 - ! The minimum halo size for the barotropic solver. -!BT x-halo = 4 ! - ! The barotropic x-halo size that is actually used. -!BT y-halo = 4 ! - ! The barotropic y-halo size that is actually used. diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.short b/exps/NWA12.COBALT/MOM_parameter_doc.short deleted file mode 100644 index 46f4182ae..000000000 --- a/exps/NWA12.COBALT/MOM_parameter_doc.short +++ /dev/null @@ -1,750 +0,0 @@ -! This file was written by the model and records the non-default parameters used at run-time. - -! === module MOM === -DIABATIC_FIRST = True ! [Boolean] default = False - ! If true, apply diabatic and thermodynamic processes, including buoyancy - ! forcing and mass gain or loss, before stepping the dynamics forward. -USE_REGRIDDING = True ! [Boolean] default = False - ! If True, use the ALE algorithm (regridding/remapping). If False, use the - ! layered isopycnal algorithm. -DT = 600.0 ! [s] - ! The (baroclinic) dynamics time step. The time-step that is actually used will - ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode - ! or the coupling timestep in coupled mode.) -DT_THERM = 1800.0 ! [s] default = 600.0 - ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be - ! an integer multiple of DT and less than the forcing or coupling time-step, - ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer - ! multiple of the coupling timestep. By default DT_THERM is set to DT. -FRAZIL = True ! [Boolean] default = False - ! If true, water freezes if it gets too cold, and the accumulated heat deficit - ! is returned in the surface state. FRAZIL is only used if - ! ENABLE_THERMODYNAMICS is true. -DO_GEOTHERMAL = True ! [Boolean] default = False - ! If true, apply geothermal heating. -BOUND_SALINITY = True ! [Boolean] default = False - ! If true, limit salinity to being positive. (The sea-ice model may ask for more - ! salt than is available and drive the salinity negative otherwise.) -C_P = 3992.0 ! [J kg-1 K-1] default = 3991.86795711963 - ! The heat capacity of sea water, approximated as a constant. This is only used - ! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10 - ! definition of conservative temperature. -WRITE_GEOM = 0 ! default = 1 - ! If =0, never write the geometry and vertical grid files. If =1, write the - ! geometry and vertical grid files only for a new simulation. If =2, always - ! write the geometry and vertical grid files. Other values are invalid. - -! === module MOM_domains === -REENTRANT_X = False ! [Boolean] default = True - ! If true, the domain is zonally reentrant. -NIGLOBAL = 775 ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. -NJGLOBAL = 845 ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. - -! === module MOM_fixed_initialization === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -TOPO_CONFIG = "file" ! - ! This specifies how bathymetry is specified: - ! file - read bathymetric information from the file - ! specified by (TOPO_FILE). - ! flat - flat bottom set to MAXIMUM_DEPTH. - ! bowl - an analytically specified bowl-shaped basin - ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. - ! spoon - a similar shape to 'bowl', but with an vertical - ! wall at the southern face. - ! halfpipe - a zonally uniform channel with a half-sine - ! profile in the meridional direction. - ! bbuilder - build topography from list of functions. - ! benchmark - use the benchmark test case topography. - ! Neverworld - use the Neverworld test case topography. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a slope and channel configuration for the - ! ISOMIP test case. - ! DOME2D - use a shelf and slope configuration for the - ! DOME2D gravity current/overflow test case. - ! Kelvin - flat but with rotated land mask. - ! seamount - Gaussian bump for spontaneous motion test case. - ! dumbbell - Sloshing channel with reservoirs on both ends. - ! shelfwave - exponential slope for shelfwave test case. - ! Phillips - ACC-like idealized topography used in the Phillips config. - ! dense - Denmark Strait-like dense water formation and overflow. - ! USER - call a user modified routine. -TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" - ! The file from which the bathymetry is read. -MINIMUM_DEPTH = 4.0 ! [m] default = 0.0 - ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is - ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is - ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than - ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. -MASKING_DEPTH = 1.0 ! [m] default = -9999.0 - ! The depth below which to mask points as land points, for which all fluxes are - ! zeroed out. MASKING_DEPTH is ignored if it has the special default value. -MAXIMUM_DEPTH = 6500.0 ! [m] - ! The maximum depth of the ocean. - -! === module MOM_open_boundary === -! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, -! if any. -OBC_NUMBER_OF_SEGMENTS = 3 ! default = 0 - ! The number of open boundary segments. -OBC_FREESLIP_VORTICITY = False ! [Boolean] default = True - ! If true, sets the normal gradient of tangential velocity to zero in the - ! relative vorticity on open boundaries. This cannot be true if another - ! OBC_XXX_VORTICITY option is True. -OBC_COMPUTED_VORTICITY = True ! [Boolean] default = False - ! If true, uses the external values of tangential velocity in the relative - ! vorticity on open boundaries. This cannot be true if another OBC_XXX_VORTICITY - ! option is True. -OBC_FREESLIP_STRAIN = False ! [Boolean] default = True - ! If true, sets the normal gradient of tangential velocity to zero in the strain - ! use in the stress tensor on open boundaries. This cannot be true if another - ! OBC_XXX_STRAIN option is True. -OBC_COMPUTED_STRAIN = True ! [Boolean] default = False - ! If true, sets the normal gradient of tangential velocity to zero in the strain - ! use in the stress tensor on open boundaries. This cannot be true if another - ! OBC_XXX_STRAIN option is True. -OBC_ZERO_BIHARMONIC = True ! [Boolean] default = False - ! If true, zeros the Laplacian of flow on open boundaries in the biharmonic - ! viscosity term. -OBC_RAMP_TIMESCALE = 2.0 ! [days] default = 1.0 - ! If RAMP_OBCS is true, this sets the ramping timescale. -OBC_TIDE_N_CONSTITUENTS = 10 ! default = 0 - ! Number of tidal constituents being added to the open boundary. -OBC_SEGMENT_001 = "J=0,I=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! - ! Documentation needs to be dynamic????? -OBC_SEGMENT_001_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 - ! Timescales in days for nudging along a segment, for inflow, then outflow. - ! Setting both to zero should behave like SIMPLE obcs for the baroclinic - ! velocities. -OBC_SEGMENT_002 = "J=N,I=N:0,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! - ! Documentation needs to be dynamic????? -OBC_SEGMENT_002_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 - ! Timescales in days for nudging along a segment, for inflow, then outflow. - ! Setting both to zero should behave like SIMPLE obcs for the baroclinic - ! velocities. -OBC_SEGMENT_003 = "I=N,J=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! - ! Documentation needs to be dynamic????? -OBC_SEGMENT_003_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 - ! Timescales in days for nudging along a segment, for inflow, then outflow. - ! Setting both to zero should behave like SIMPLE obcs for the baroclinic - ! velocities. -OBC_TRACER_RESERVOIR_LENGTH_SCALE_OUT = 9000.0 ! [m] default = 0.0 - ! An effective length scale for restoring the tracer concentration at the - ! boundaries to externally imposed values when the flow is exiting the domain. -OBC_TRACER_RESERVOIR_LENGTH_SCALE_IN = 9000.0 ! [m] default = 0.0 - ! An effective length scale for restoring the tracer concentration at the - ! boundaries to values from the interior when the flow is entering the domain. -BRUSHCUTTER_MODE = True ! [Boolean] default = False - ! If true, read external OBC data on the supergrid. -OBC_TIDE_CONSTITUENTS = "M2,S2,N2,K2,K1,O1,P1,Q1,MM,MF" ! - ! Names of tidal constituents being added to the open boundaries. -OBC_TIDE_ADD_EQ_PHASE = True ! [Boolean] default = False - ! If true, add the equilibrium phase argument to the specified tidal phases. -OBC_TIDE_ADD_NODAL = True ! [Boolean] default = False - ! If true, include 18.6 year nodal modulation in the boundary tidal forcing. -OBC_TIDE_REF_DATE = 1993, 1, 1 ! - ! Reference date to use for tidal calculations and equilibrium phase. -OBC_TIDE_NODAL_REF_DATE = 1993, 7, 2 ! default = 0 - ! Fixed reference date to use for nodal modulation of boundary tides. - -! === module MOM_verticalGrid === -! Parameters providing information about the vertical grid. -NK = 75 ! [nondim] - ! The number of model layers. - -! === module MOM_EOS === -DTFREEZE_DP = -7.75E-08 ! [degC Pa-1] default = 0.0 - ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential - ! temperature with pressure. - -! === module MOM_restart === -MAX_FIELDS = 500 ! default = 100 - ! The maximum number of restart fields that can be used. - -! === module MOM_tracer_flow_control === -USE_generic_tracer = True ! [Boolean] default = False - ! If true and _USE_GENERIC_TRACER is defined as a preprocessor macro, use the - ! MOM_generic_tracer packages. - -! === module register_MOM_generic_tracer === -GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc" ! default = "" - ! The file in which the generic trcer initial values can be found, or an empty - ! string for internal initialization. - -! === module MOM_boundary_update === - -! === module segment_tracer_registry_init === - -! === module MOM_coord_initialization === -COORD_CONFIG = "ALE" ! default = "none" - ! This specifies how layers are to be defined: - ! ALE or none - used to avoid defining layers in ALE mode - ! file - read coordinate information from the file - ! specified by (COORD_FILE). - ! BFB - Custom coords for buoyancy-forced basin case - ! based on SST_S, T_BOT and DRHO_DT. - ! linear - linear based on interfaces not layers - ! layer_ref - linear based on layer densities - ! ts_ref - use reference temperature and salinity - ! ts_range - use range of temperature and salinity - ! (T_REF and S_REF) to determine surface density - ! and GINT calculate internal densities. - ! gprime - use reference density (RHO_0) for surface - ! density and GINT calculate internal densities. - ! ts_profile - use temperature and salinity profiles - ! (read from COORD_FILE) to set layer densities. - ! USER - call a user modified routine. -REGRIDDING_COORDINATE_MODE = "Z*" ! default = "LAYER" - ! Coordinate mode for vertical regridding. Choose among the following - ! possibilities: LAYER - Isopycnal or stacked shallow water layers - ! ZSTAR, Z* - stretched geopotential z* - ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf - ! SIGMA - terrain following coordinates - ! RHO - continuous isopycnal - ! HYCOM1 - HyCOM-like hybrid coordinate - ! HYBGEN - Hybrid coordinate from the Hycom hybgen code - ! ADAPTIVE - optimize for smooth neutral density surfaces -ALE_COORDINATE_CONFIG = "FILE:vgrid_75_2m.nc,dz" ! default = "UNIFORM" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter ALE_RESOLUTION - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz -!ALE_RESOLUTION = 4*2.0, 2*2.01, 2.02, 2.03, 2.05, 2.08, 2.11, 2.15, 2.2, 2.27, 2.34, 2.44, 2.55, 2.69, 2.85, 3.04, 3.27, 3.54, 3.85, 4.22, 4.66, 5.18, 5.79, 6.52, 7.37, 8.37, 9.55, 10.94, 12.57, 14.48, 16.72, 19.33, 22.36, 25.87, 29.91, 34.53, 39.79, 45.72, 52.37, 59.76, 67.89, 76.74, 86.29, 96.47, 107.2, 118.35, 129.81, 141.42, 153.01, 164.41, 175.47, 186.01, 195.9, 205.01, 213.27, 220.6, 226.99, 232.43, 236.96, 240.63, 243.52, 245.72, 247.33, 248.45, 249.18, 249.62, 249.86, 249.96, 249.99, 2*250.0 ! [m] - ! The distribution of vertical resolution for the target - ! grid used for Eulerian-like coordinates. For example, - ! in z-coordinate mode, the parameter is a list of level - ! thicknesses (in m). In sigma-coordinate mode, the list - ! is of non-dimensional fractions of the water column. -MIN_THICKNESS = 1.0E-06 ! [m] default = 0.001 - ! When regridding, this is the minimum layer thickness allowed. -REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" - ! This sets the reconstruction scheme used for vertical remapping for all - ! variables. It can be one of the following schemes: - ! PCM (1st-order accurate) - ! PLM (2nd-order accurate) - ! PLM_HYBGEN (2nd-order accurate) - ! PPM_H4 (3rd-order accurate) - ! PPM_IH4 (3rd-order accurate) - ! PPM_HYBGEN (3rd-order accurate) - ! WENO_HYBGEN (3rd-order accurate) - ! PQM_IH4IH3 (4th-order accurate) - ! PQM_IH6IH5 (5th-order accurate) - -! === module MOM_state_initialization === -THICKNESS_CONFIG = "coord" ! default = "uniform" - ! A string that determines how the initial layer thicknesses are specified for a - ! new run: - ! file - read interface heights from the file specified - ! by (THICKNESS_FILE). - ! thickness_file - read thicknesses from the file specified - ! by (THICKNESS_FILE). - ! mass_file - read thicknesses in units of mass per unit area from the file - ! specified by (THICKNESS_FILE). - ! coord - determined by ALE coordinate. - ! uniform - uniform thickness layers evenly distributed - ! between the surface and MAXIMUM_DEPTH. - ! list - read a list of positive interface depths. - ! DOME - use a slope and channel configuration for the - ! DOME sill-overflow test case. - ! ISOMIP - use a configuration for the - ! ISOMIP test case. - ! benchmark - use the benchmark test case thicknesses. - ! Neverworld - use the Neverworld test case thicknesses. - ! search - search a density profile for the interface - ! densities. This is not yet implemented. - ! circle_obcs - the circle_obcs test case is used. - ! DOME2D - 2D version of DOME initialization. - ! adjustment2d - 2D lock exchange thickness ICs. - ! sloshing - sloshing gravity thickness ICs. - ! seamount - no motion test with seamount ICs. - ! dumbbell - sloshing channel ICs. - ! soliton - Equatorial Rossby soliton. - ! rossby_front - a mixed layer front in thermal wind balance. - ! USER - call a user modified routine. -TS_CONFIG = "file" ! - ! A string that determines how the initial temperatures and salinities are - ! specified for a new run: - ! file - read velocities from the file specified - ! by (TS_FILE). - ! fit - find the temperatures that are consistent with - ! the layer densities and salinity S_REF. - ! TS_profile - use temperature and salinity profiles - ! (read from TS_FILE) to set layer densities. - ! benchmark - use the benchmark test case T & S. - ! linear - linear in logical layer space. - ! DOME2D - 2D DOME initialization. - ! ISOMIP - ISOMIP initialization. - ! adjustment2d - 2d lock exchange T/S ICs. - ! sloshing - sloshing mode T/S ICs. - ! seamount - no motion test with seamount ICs. - ! dumbbell - sloshing channel ICs. - ! rossby_front - a mixed layer front in thermal wind balance. - ! SCM_CVMix_tests - used in the SCM CVMix tests. - ! USER - call a user modified routine. -TS_FILE = "glorys_ic_1993-01-01.nc" ! - ! The initial condition file for temperature. -TEMP_IC_VAR = "temp" ! default = "PTEMP" - ! The initial condition variable for potential temperature. -SALT_IC_VAR = "salt" ! default = "SALT" - ! The initial condition variable for salinity. -DEPRESS_INITIAL_SURFACE = True ! [Boolean] default = False - ! If true, depress the initial surface to avoid huge tsunamis when a large - ! surface pressure is applied. -SURFACE_HEIGHT_IC_FILE = "glorys_ic_1993-01-01.nc" ! - ! The initial condition file for the surface height. -SURFACE_HEIGHT_IC_VAR = "ssh" ! default = "SSH" - ! The initial condition variable for the surface height. -VELOCITY_CONFIG = "file" ! default = "zero" - ! A string that determines how the initial velocities are specified for a new - ! run: - ! file - read velocities from the file specified - ! by (VELOCITY_FILE). - ! zero - the fluid is initially at rest. - ! uniform - the flow is uniform (determined by - ! parameters INITIAL_U_CONST and INITIAL_V_CONST). - ! rossby_front - a mixed layer front in thermal wind balance. - ! soliton - Equatorial Rossby soliton. - ! USER - call a user modified routine. -VELOCITY_FILE = "glorys_ic_1993-01-01.nc" ! - ! The name of the velocity initial condition file. -OBC_SEGMENT_001_DATA = "U=file:uv_001.nc(u),V=file:uv_001.nc(v),SSH=file:zos_001.nc(zos),TEMP=file:thetao_001.nc(thetao),SALT=file:so_001.nc(so),Uamp=file:tu_001.nc(uamp),Uphase=file:tu_001.nc(uphase),Vamp=file:tu_001.nc(vamp),Vphase=file:tu_001.nc(vphase),SSHamp=file:tz_001.nc(zamp),SSHphase=file:tz_001.nc(zphase)" ! - ! OBC segment docs -OBC_SEGMENT_002_DATA = "U=file:uv_002.nc(u),V=file:uv_002.nc(v),SSH=file:zos_002.nc(zos),TEMP=file:thetao_002.nc(thetao),SALT=file:so_002.nc(so),Uamp=file:tu_002.nc(uamp),Uphase=file:tu_002.nc(uphase),Vamp=file:tu_002.nc(vamp),Vphase=file:tu_002.nc(vphase),SSHamp=file:tz_002.nc(zamp),SSHphase=file:tz_002.nc(zphase)" ! - ! OBC segment docs -OBC_SEGMENT_003_DATA = "U=file:uv_003.nc(u),V=file:uv_003.nc(v),SSH=file:zos_003.nc(zos),TEMP=file:thetao_003.nc(thetao),SALT=file:so_003.nc(so),Uamp=file:tu_003.nc(uamp),Uphase=file:tu_003.nc(uphase),Vamp=file:tu_003.nc(vamp),Vphase=file:tu_003.nc(vphase),SSHamp=file:tz_003.nc(zamp),SSHphase=file:tz_003.nc(zphase)" ! - ! OBC segment docs - -! === module MOM_diag_mediator === -DIAG_COORD_DEF_Z = "FILE:diag_dz.nc,dz" ! default = "WOA09" - ! Determines how to specify the coordinate resolution. Valid options are: - ! PARAM - use the vector-parameter DIAG_COORD_RES_Z - ! UNIFORM[:N] - uniformly distributed - ! FILE:string - read from a file. The string specifies - ! the filename and variable name, separated - ! by a comma or space, e.g. FILE:lev.nc,dz - ! or FILE:lev.nc,interfaces=zw - ! WOA09[:N] - the WOA09 vertical grid (approximately) - ! FNC1:string - FNC1:dz_min,H_total,power,precision - ! HYBRID:string - read from a file. The string specifies - ! the filename and two variable names, separated - ! by a comma or space, for sigma-2 and dz. e.g. - ! HYBRID:vgrid.nc,sigma2,dz - -! === module MOM_lateral_mixing_coeffs === -USE_VARIABLE_MIXING = True ! [Boolean] default = False - ! If true, the variable mixing code will be called. This allows diagnostics to - ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or - ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter - ! file. -USE_STORED_SLOPES = True ! [Boolean] default = False - ! If true, the isopycnal slopes are calculated once and stored for re-use. This - ! uses more memory but avoids calling the equation of state more times than - ! should be necessary. - -! === module MOM_set_visc === -CHANNEL_DRAG = True ! [Boolean] default = False - ! If true, the bottom drag is exerted directly on each layer proportional to the - ! fraction of the bottom it overlies. -PRANDTL_TURB = 1.25 ! [nondim] default = 1.0 - ! The turbulent Prandtl number applied to shear instability. -HBBL = 10.0 ! [m] - ! The thickness of a bottom boundary layer with a viscosity increased by - ! KV_EXTRA_BBL if BOTTOMDRAGLAW is not defined, or the thickness over which - ! near-bottom velocities are averaged for the drag law if BOTTOMDRAGLAW is - ! defined but LINEAR_DRAG is not. -BBL_THICK_MIN = 0.1 ! [m] default = 0.0 - ! The minimum bottom boundary layer thickness that can be used with - ! BOTTOMDRAGLAW. This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum - ! near-bottom viscosity. -KV = 1.0E-06 ! [m2 s-1] - ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 - ! m2 s-1, may be used. - -! === module MOM_thickness_diffuse === -KHTH_MAX_CFL = 0.1 ! [nondimensional] default = 0.8 - ! The maximum value of the local diffusive CFL ratio that is permitted for the - ! thickness diffusivity. 1.0 is the marginally unstable value in a pure layered - ! model, but much smaller numbers (e.g. 0.1) seem to work better for ALE-based - ! models. - -! === module MOM_porous_barriers === - -! === module MOM_dynamics_split_RK2 === -TIDES = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing. - -! === module MOM_continuity_PPM === - -! === module MOM_CoriolisAdv === -CORIOLIS_EN_DIS = True ! [Boolean] default = False - ! If true, two estimates of the thickness fluxes are used to estimate the - ! Coriolis term, and the one that dissipates energy relative to the other one is - ! used. - -! === module MOM_self_attr_load === - -! === module MOM_tidal_forcing === -TIDE_M2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the M2 frequency. This is only used - ! if TIDES is true. -TIDE_S2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the S2 frequency. This is only used - ! if TIDES is true. -TIDE_N2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the N2 frequency. This is only used - ! if TIDES is true. -TIDE_K2 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the K2 frequency. This is only used - ! if TIDES is true. -TIDE_K1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the K1 frequency. This is only used - ! if TIDES is true. -TIDE_O1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the O1 frequency. This is only used - ! if TIDES is true. -TIDE_P1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the P1 frequency. This is only used - ! if TIDES is true. -TIDE_Q1 = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the Q1 frequency. This is only used - ! if TIDES is true. -TIDE_MF = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the MF frequency. This is only used - ! if TIDES is true. -TIDE_MM = True ! [Boolean] default = False - ! If true, apply tidal momentum forcing at the MM frequency. This is only used - ! if TIDES is true. -TIDE_REF_DATE = 1993, 1, 1 ! default = 0 - ! Year,month,day to use as reference date for tidal forcing. If not specified, - ! defaults to 0. -TIDE_USE_EQ_PHASE = True ! [Boolean] default = False - ! Correct phases by calculating equilibrium phase arguments for TIDE_REF_DATE. - -! === module MOM_PressureForce === - -! === module MOM_PressureForce_FV === -MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False - ! If true, use mass weighting when interpolating T/S for integrals near the - ! bathymetry in FV pressure gradient calculations. - -! === module MOM_Zanna_Bolton === - -! === module MOM_hor_visc === -AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 - ! The velocity scale which is multiplied by the cube of the grid spacing to - ! calculate the biharmonic viscosity. The final viscosity is the largest of this - ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. -SMAGORINSKY_AH = True ! [Boolean] default = False - ! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity. -SMAG_BI_CONST = 0.015 ! [nondim] default = 0.0 - ! The nondimensional biharmonic Smagorinsky constant, typically 0.015 - 0.06. - -! === module MOM_vert_friction === -DIRECT_STRESS = True ! [Boolean] default = False - ! If true, the wind stress is distributed over the topmost HMIX_STRESS of fluid - ! (like in HYCOM), and an added mixed layer viscosity or a physically based - ! boundary layer turbulence parameterization is not needed for stability. -HMIX_FIXED = 0.9 ! [m] - ! The prescribed depth over which the near-surface viscosity and diffusivity are - ! elevated when the bulk mixed layer is not used. -MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 - ! The maximum velocity allowed before the velocity components are truncated. - -! === module MOM_barotropic === -BOUND_BT_CORRECTION = True ! [Boolean] default = False - ! If true, the corrective pseudo mass-fluxes into the barotropic solver are - ! limited to values that require less than maxCFL_BT_cont to be accommodated. -BT_PROJECT_VELOCITY = True ! [Boolean] default = False - ! If true, step the barotropic velocity first and project out the velocity - ! tendency by 1+BEBT when calculating the transport. The default (false) is to - ! use a predictor continuity step to find the pressure field, and then to do a - ! corrector continuity step using a weighted average of the old and new - ! velocities, with weights of (1-BEBT) and BEBT. -BT_NONLIN_STRESS = True ! [Boolean] default = False - ! If true, use the full depth of the ocean at the start of the barotropic step - ! when calculating the surface stress contribution to the barotropic - ! acclerations. Otherwise use the depth based on bathyT. -DYNAMIC_SURFACE_PRESSURE = True ! [Boolean] default = False - ! If true, add a dynamic pressure due to a viscous ice shelf, for instance. -TIDAL_SAL_FLATHER = True ! [Boolean] default = False - ! If true, then apply adjustments to the external gravity wave speed used with - ! the Flather OBC routine consistent with the barotropic solver. This applies to - ! cases with tidal forcing using the scalar self-attraction approximation. The - ! default is currently False in order to retain previous answers but should be - ! set to True for new experiments -SADOURNY = False ! [Boolean] default = True - ! If true, the Coriolis terms are discretized with the Sadourny (1975) energy - ! conserving scheme, otherwise the Arakawa & Hsu scheme is used. If the - ! internal deformation radius is not resolved, the Sadourny scheme should - ! probably be used. -BT_STRONG_DRAG = True ! [Boolean] default = False - ! If true, use a stronger estimate of the retarding effects of strong bottom - ! drag, by making it implicit with the barotropic time-step instead of implicit - ! with the baroclinic time-step and dividing by the number of barotropic steps. -LINEARIZED_BT_CORIOLIS = False ! [Boolean] default = True - ! If true use the bottom depth instead of the total water column thickness in - ! the barotropic Coriolis term calculations. -BEBT = 0.2 ! [nondim] default = 0.1 - ! BEBT determines whether the barotropic time stepping uses the forward-backward - ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range - ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 - ! (for a backward Euler treatment). In practice, BEBT must be greater than about - ! 0.05. -DTBT = -0.9 ! [s or nondim] default = -0.98 - ! The barotropic time step, in s. DTBT is only used with the split explicit time - ! stepping. To set the time step automatically based the maximum stable value - ! use 0, or a negative value gives the fraction of the stable value. Setting - ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will - ! actually be used is an integer fraction of DT, rounding down. - -! === module MOM_mixed_layer_restrat === -MIXEDLAYER_RESTRAT = True ! [Boolean] default = False - ! If true, a density-gradient dependent re-stratifying flow is imposed in the - ! mixed layer. Can be used in ALE mode without restriction but in layer mode can - ! only be used if BULKMIXEDLAYER is true. -MLE% -%MLE -FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0 - ! A nondimensional coefficient that is proportional to the ratio of the - ! deformation radius to the dominant lengthscale of the submesoscale mixed layer - ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic - ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of - ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. - ! (2010) -MLE_FRONT_LENGTH = 1500.0 ! [m] default = 0.0 - ! If non-zero, is the frontal-length scale used to calculate the upscaling of - ! buoyancy gradients that is otherwise represented by the parameter - ! FOX_KEMPER_ML_RESTRAT_COEF. If MLE_FRONT_LENGTH is non-zero, it is recommended - ! to set FOX_KEMPER_ML_RESTRAT_COEF=1.0. -MLE_USE_PBL_MLD = True ! [Boolean] default = False - ! If true, the MLE parameterization will use the mixed-layer depth provided by - ! the active PBL parameterization. If false, MLE will estimate a MLD based on a - ! density difference with the surface using the parameter MLE_DENSITY_DIFF. -MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 - ! The time-scale for a running-mean filter applied to the mixed-layer depth used - ! in the MLE restratification parameterization. When the MLD deepens below the - ! current running-mean the running-mean is instantaneously set to the current - ! MLD. - -! === module MOM_diagnostics === - -! === module MOM_diabatic_driver === -! The following parameters are used for diabatic processes. -USE_LEGACY_DIABATIC_DRIVER = False ! [Boolean] default = True - ! If true, use a legacy version of the diabatic subroutine. This is temporary - ! and is needed to avoid change in answers. -ENERGETICS_SFC_PBL = True ! [Boolean] default = False - ! If true, use an implied energetics planetary boundary layer scheme to - ! determine the diffusivity and viscosity in the surface boundary layer. -EPBL_IS_ADDITIVE = False ! [Boolean] default = True - ! If true, the diffusivity from ePBL is added to all other diffusivities. - ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. - -! === module MOM_geothermal === - -! === module MOM_set_diffusivity === -BBL_EFFIC = 0.0 ! [nondim] default = 0.2 - ! The efficiency with which the energy extracted by bottom drag drives BBL - ! diffusion. This is only used if BOTTOMDRAGLAW is true. -BBL_MIXING_AS_MAX = False ! [Boolean] default = True - ! If true, take the maximum of the diffusivity from the BBL mixing and the other - ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added. - -! === module MOM_bkgnd_mixing === -! Adding static vertical background mixing coefficients -KD = 1.0E-06 ! [m2 s-1] default = 0.0 - ! The background diapycnal diffusivity of density in the interior. Zero or the - ! molecular value, ~1e-7 m2 s-1, may be used. -KD_MIN = 2.0E-07 ! [m2 s-1] default = 1.0E-08 - ! The minimum diapycnal diffusivity. -DOUBLE_DIFFUSION = True ! [Boolean] default = False - ! If true, increase diffusivites for temperature or salinity based on the - ! double-diffusive parameterization described in Large et al. (1994). - -! === module MOM_kappa_shear === -! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 -USE_JACKSON_PARAM = True ! [Boolean] default = False - ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing - ! parameterization. -MAX_RINO_IT = 25 ! [nondim] default = 50 - ! The maximum number of iterations that may be used to estimate the Richardson - ! number driven mixing. - -! === module MOM_diabatic_aux === -! The following parameters are used for auxiliary diabatic processes. -PRESSURE_DEPENDENT_FRAZIL = True ! [Boolean] default = False - ! If true, use a pressure dependent freezing temperature when making frazil. The - ! default is false, which will be faster but is inappropriate with ice-shelf - ! cavities. -IGNORE_FLUXES_OVER_LAND = True ! [Boolean] default = False - ! If true, the model does not check if fluxes are being applied over land - ! points. This is needed when the ocean is coupled with ice shelves and sea ice, - ! since the sea ice mask needs to be different than the ocean mask to avoid sea - ! ice formation under ice shelves. This flag only works when use_ePBL = True. -DO_RIVERMIX = True ! [Boolean] default = False - ! If true, apply additional mixing wherever there is runoff, so that it is mixed - ! down to RIVERMIX_DEPTH if the ocean is that deep. -RIVERMIX_DEPTH = 5.0 ! [m] default = 0.0 - ! The depth to which rivers are mixed if DO_RIVERMIX is defined. -VAR_PEN_SW = True ! [Boolean] default = False - ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine - ! the e-folding depth of incoming short wave radiation. -CHL_FROM_FILE = False ! [Boolean] default = True - ! If true, chl_a is read from a file. - -! === module MOM_energetic_PBL === -ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0 - ! When setting the decay scale for turbulence, use this fraction of the absolute - ! rotation rate blended with the local value of f, as sqrt((1-of)*f^2 + - ! of*4*omega^2). -TKE_DECAY = 0.001 ! [nondim] default = 2.5 - ! TKE_DECAY relates the vertical rate of decay of the TKE available for - ! mechanical entrainment to the natural Ekman depth. -EPBL_MSTAR_SCHEME = "REICHL_H18" ! default = "CONSTANT" - ! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are: - ! CONSTANT - Use a fixed mstar given by MSTAR - ! OM4 - Use L_Ekman/L_Obukhov in the stabilizing limit, as in OM4 - ! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018. -MSTAR_CAP = 10.0 ! [nondim] default = -1.0 - ! If this value is positive, it sets the maximum value of mstar allowed in ePBL. - ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT). -RH18_MSTAR_CN3 = -6.0 ! [nondim] default = -5.0 - ! MSTAR_N coefficient 3 (exponential decay coefficient). The value of -5.0 is - ! given in RH18. Increasing this increases how quickly the value of MSTAR - ! decreases as Hf/ust increases. -NSTAR = 0.06 ! [nondim] default = 0.2 - ! The portion of the buoyant potential energy imparted by surface fluxes that is - ! available to drive entrainment at the base of mixed layer when that energy is - ! positive. -MSTAR_CONV_ADJ = 0.66 ! [nondim] default = 0.0 - ! Coefficient used for reducing mstar during convection due to reduction of - ! stable density gradient. -EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1 - ! A scale for the mixing length in the transition layer at the edge of the - ! boundary layer as a fraction of the boundary layer thickness. -EPBL_MLD_BISECTION = True ! [Boolean] default = False - ! If true, use bisection with the iterative determination of the self-consistent - ! mixed layer depth. Otherwise use the false position after a maximum and - ! minimum bound have been evaluated and the returned value or bisection before - ! this. -MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0 - ! The exponent applied to the ratio of the distance to the MLD and the MLD depth - ! which determines the shape of the mixing length. This is only used if - ! USE_MLD_ITERATION is True. -EPBL_VEL_SCALE_SCHEME = "REICHL_H18" ! default = "CUBE_ROOT_TKE" - ! Selects the method for translating TKE into turbulent velocities. Valid values - ! are: - ! CUBE_ROOT_TKE - A constant times the cube root of remaining TKE. - ! REICHL_H18 - Use the scheme based on a combination of w* and v* as - ! documented in Reichl & Hallberg, 2018. -WSTAR_USTAR_COEF = 15.0 ! [nondim] default = 1.0 - ! A ratio relating the efficiency with which convectively released energy is - ! converted to a turbulent velocity, relative to mechanically forced TKE. Making - ! this larger increases the BL diffusivity -EPBL_VEL_SCALE_FACTOR = 0.5477 ! [nondim] default = 1.0 - ! An overall nondimensional scaling factor for wT. Making this larger increases - ! the PBL diffusivity. -VSTAR_SURF_FAC = 1.8258 ! [nondim] default = 1.2 - ! The proportionality times ustar to set vstar at the surface. -USE_LA_LI2016 = True ! [Boolean] default = False - ! A logical to use the Li et al. 2016 (submitted) formula to determine the - ! Langmuir number. -EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" - ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. - ! Valid values are: - ! NONE - Do not do any extra mixing due to Langmuir turbulence - ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir - ! turbulence - ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other - ! contributions -LT_ENHANCE_COEF = 0.1056 ! [nondim] default = 0.447 - ! Coefficient for Langmuir enhancement of mstar -LT_ENHANCE_EXP = -1.0 ! [nondim] default = -1.33 - ! Exponent for Langmuir enhancementt of mstar -LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 - ! Coefficient for modification of Langmuir number due to MLD approaching Ekman - ! depth. -LT_MOD_LAC4 = 0.8 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! stable Obukhov depth. -LT_MOD_LAC5 = 0.8 ! [nondim] default = 0.95 - ! Coefficient for modification of Langmuir number due to ratio of Ekman to - ! unstable Obukhov depth. - -! === module MOM_opacity === -PEN_SW_NBANDS = 3 ! default = 1 - ! The number of bands of penetrating shortwave radiation. - -! === module MOM_tracer_advect === -TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" - ! The horizontal transport scheme for tracers: - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) - ! PPM - Piecewise Parabolic Method (Colella-Woodward) - -! === module MOM_tracer_hor_diff === -CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False - ! If true, use enough iterations the diffusion to ensure that the diffusive - ! equivalent of the CFL limit is not violated. If false, always use the greater - ! of 1 or MAX_TR_DIFFUSION_CFL iteration. - -! === module MOM_sum_output === -CALCULATE_APE = False ! [Boolean] default = True - ! If true, calculate the available potential energy of the interfaces. Setting - ! this to false reduces the memory footprint of high-PE-count models - ! dramatically. -MAXTRUNC = 1000 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 - ! to stop if there is any truncation of velocities. - -! === module ocean_stochastics_init === - -! === module ocean_model_init === - -! === module MOM_surface_forcing === -MAX_P_SURF = 0.0 ! [Pa] default = -1.0 - ! The maximum surface pressure that can be exerted by the atmosphere and - ! floating sea-ice or ice shelves. This is needed because the FMS coupling - ! structure does not limit the water that can be frozen out of the ocean and the - ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a - ! negative value is used. -CD_TIDES = 0.0018 ! [nondim] default = 1.0E-04 - ! The drag coefficient that applies to the tides. -USE_RIGID_SEA_ICE = True ! [Boolean] default = False - ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that - ! resist vertical motion. -SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 - ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit - ! rigidity - -! === module MOM_restart === -LA_DEPTH_RATIO = 0.2 ! [nondim] default = 0.04 - ! The depth (normalized by BLD) to average Stokes drift over in Langmuir number - ! calculation, where La = sqrt(ust/Stokes). diff --git a/exps/NWA12.COBALT/SIS.available_diags b/exps/NWA12.COBALT/SIS.available_diags deleted file mode 100644 index 0c90e9502..000000000 --- a/exps/NWA12.COBALT/SIS.available_diags +++ /dev/null @@ -1,426 +0,0 @@ -"ice_model", "SH" [Unused] - ! long_name: sensible heat flux - ! units: W/m^2 -"ice_model", "LH" [Unused] - ! long_name: latent heat flux - ! units: W/m^2 -"ice_model", "SW" [Unused] - ! long_name: shortwave heat flux - ! units: W/m^2 -"ice_model", "LW" [Unused] - ! long_name: longwave heat flux over ice - ! units: W/m^2 -"ice_model", "SNOWFL" [Used] - ! long_name: rate of snow fall - ! units: kg/(m^2*s) -"ice_model", "RAIN" [Unused] - ! long_name: rate of rain fall - ! units: kg/(m^2*s) -"ice_model", "RUNOFF" [Unused] - ! long_name: liquid runoff - ! units: kg/(m^2*s) -"ice_model", "CALVING" [Used] - ! long_name: frozen runoff - ! units: kg/(m^2*s) -"ice_model", "RUNOFF_HFLX" [Unused] - ! long_name: liquid runoff sensible heat flux - ! units: W/m^2 -"ice_model", "CALVING_HFLX" [Used] - ! long_name: frozen runoff sensible heat flux - ! units: W/m^2 -"ice_model", "EVAP" [Unused] - ! long_name: evaporation - ! units: kg/(m^2*s) -"ice_model", "SALTF" [Used] - ! long_name: ice to ocean salt flux - ! units: kg/(m^2*s) -"ice_model", "TMELT" [Used] - ! long_name: upper surface melting energy flux - ! units: W/m^2 -"ice_model", "BMELT" [Used] - ! long_name: bottom surface melting energy flux - ! units: W/m^2 -"ice_model", "BHEAT" [Used] - ! long_name: ocean to ice heat flux - ! units: W/m^2 -"ice_model", "SWDN" [Unused] - ! long_name: Downward shortwave heat flux at the bottom of the atmosphere - ! units: W/m^2 -"ice_model", "ALB" [Used] - ! long_name: Shortwave flux weighted surface albedo, or 1 if no SW - ! units: 0-1 -"ice_model", "SW_VIS" [Unused] - ! long_name: visible shortwave heat flux - ! units: W/m^2 -"ice_model", "SW_DIR" [Unused] - ! long_name: direct shortwave heat flux - ! units: W/m^2 -"ice_model", "SW_DIF" [Unused] - ! long_name: diffuse shortwave heat flux - ! units: W/m^2 -"ice_model", "SW_VIS_DIR" [Unused] - ! long_name: visible direct shortwave heat flux - ! units: W/m^2 -"ice_model", "SW_VIS_DIF" [Unused] - ! long_name: visible diffuse shortwave heat flux - ! units: W/m^2 -"ice_model", "SW_NIR_DIR" [Unused] - ! long_name: near IR direct shortwave heat flux - ! units: W/m^2 -"ice_model", "SW_NIR_DIF" [Unused] - ! long_name: near IR diffuse shortwave heat flux - ! units: W/m^2 -"ice_model", "EVAP_T0" [Unused] - ! long_name: evaporation at 0 degC - ! units: kg/(m^2*s) -"ice_model", "LW_T0" [Unused] - ! long_name: net downward longwave heat flux over ice at 0 degC - ! units: W/m^2 -"ice_model", "SH_T0" [Unused] - ! long_name: sensible heat flux at 0 degC - ! units: W/m^2 -"ice_model", "dEVAP_dT" [Unused] - ! long_name: partial derivative of evaporation with ice skin temperature - ! units: kg/(m^2*s*K) -"ice_model", "dLW_dT" [Unused] - ! long_name: partial derivative of net downward longwave heat flux with ice skin temperature - ! units: W/(m^2*K) -"ice_model", "dSH_dT" [Unused] - ! long_name: partial derivative of sensible heat flux with ice skin temperature - ! units: W/(m^2*K) -"ice_model", "TS_CAT" [Unused] - ! long_name: surface temperature by category - ! units: C -"ice_model", "EVAP_CAT" [Unused] - ! long_name: evaporation by category - ! units: kg/(m^2*s) -"ice_model", "LW_CAT" [Unused] - ! long_name: longwave heat flux by category - ! units: W/m^2 -"ice_model", "SH_CAT" [Unused] - ! long_name: sensible heat flux by category - ! units: W/m^2 -"ice_model", "TS" [Unused] - ! long_name: surface temperature - ! units: C -"ice_model", "sitemptop" [Used] - ! long_name: surface temperature - ! units: C -"ice_model", "sitemptop_CMOR" [Unused] - ! long_name: Surface Temperature of Sea ice - ! units: Kelvin - ! standard_name: SeaIceSurfaceTemperature -"ice_model", "SLP" [Unused] - ! long_name: sea level pressure - ! units: Pa -"ice_model", "SST" [Unused] - ! long_name: sea surface temperature - ! units: deg-C -"ice_model", "SSS" [Unused] - ! long_name: sea surface salinity - ! units: psu -"ice_model", "SSH" [Unused] - ! long_name: sea surface height - ! units: m -"ice_model", "UO" [Unused] - ! long_name: surface current - x component - ! units: m/s -"ice_model", "VO" [Unused] - ! long_name: surface current - y component - ! units: m/s -"ice_model", "FRAZIL" [Used] - ! long_name: energy flux of frazil formation - ! units: W/m^2 -"ice_model", "LSRC" [Used] - ! long_name: frozen water local source - ! units: kg/(m^2*yr) -"ice_model", "LSNK" [Used] - ! long_name: frozen water local sink - ! units: kg/(m^2*yr) -"ice_model", "BSNK" [Used] - ! long_name: frozen water local bottom sink - ! units: kg/(m^2*yr) -"ice_model", "SN2IC" [Used] - ! long_name: rate of snow to ice conversion - ! units: kg/(m^2*s) -"ice_model", "net_melt" [Unused] - ! long_name: net mass flux from ice & snow to ocean due to melting & freezing - ! units: kg m-2 s-1 -"ice_model", "fsitherm" [Unused] - ! long_name: water_flux_into_sea_water_due_to_sea_ice_thermodynamics - ! units: kg m-2 s-1 -"ice_model", "SIGI" [Unused] - ! long_name: first stress invariant - ! units: none -"ice_model", "SIGII" [Unused] - ! long_name: second stress invariant - ! units: none -"ice_model", "STRENGTH" [Unused] - ! long_name: ice strength - ! units: Pa*m -"ice_model", "STREN_0" [Unused] - ! long_name: ice strength at start of rheology - ! units: Pa*m -"ice_model", "FI_X" [Used] - ! long_name: ice internal stress - x component - ! units: Pa -"ice_model", "FI_Y" [Used] - ! long_name: ice internal stress - y component - ! units: Pa -"ice_model", "FC_X" [Unused] - ! long_name: Coriolis force - x component - ! units: Pa -"ice_model", "FC_Y" [Unused] - ! long_name: Coriolis force - y component - ! units: Pa -"ice_model", "Cor_ui" [Unused] - ! long_name: Coriolis ice acceleration - x component - ! units: m s-2 -"ice_model", "Cor_vi" [Unused] - ! long_name: Coriolis ice acceleration - y component - ! units: m s-2 -"ice_model", "FP_X" [Unused] - ! long_name: Pressure force - x component - ! units: Pa -"ice_model", "FP_Y" [Unused] - ! long_name: Pressure force - y component - ! units: Pa -"ice_model", "Pfa_ui" [Unused] - ! long_name: Pressure-force ice acceleration - x component - ! units: m s-2 -"ice_model", "Pfa_vi" [Unused] - ! long_name: Pressure-force ice acceleration - y component - ! units: m s-2 -"ice_model", "FW_X" [Unused] - ! long_name: water stress on ice - x component - ! units: Pa -"ice_model", "FW_Y" [Unused] - ! long_name: water stress on ice - y component - ! units: Pa -"ice_model", "FLF_X" [Unused] - ! long_name: land-fast bottom stress on ice - x component - ! units: Pa -"ice_model", "FLF_Y" [Unused] - ! long_name: land-fast bottom stress on ice - y component - ! units: Pa -"ice_model", "UI" [Unused] - ! long_name: ice velocity - x component - ! units: m/s -"ice_model", "VI" [Unused] - ! long_name: ice velocity - y component - ! units: m/s -"ice_model", "MIS_tot" [Unused] - ! long_name: Mass of ice and snow at t-points - ! units: kg m-2 -"ice_model", "CI_tot" [Unused] - ! long_name: Initial summed concentration of ice at t-points - ! units: nondim -"ice_model", "CI_proj" [Unused] - ! long_name: Projected summed concentration of ice at t-points - ! units: nondim -"ice_model", "MI_U" [Unused] - ! long_name: Mass of ice and snow at u-points - ! units: kg m-2 -"ice_model", "MI_V" [Unused] - ! long_name: Mass of ice and snow at v-points - ! units: kg m-2 -"ice_model", "FI_d_X" [Unused] - ! long_name: ice divergence internal stress - x component - ! units: Pa -"ice_model", "FI_d_Y" [Unused] - ! long_name: ice divergence internal stress - y component - ! units: Pa -"ice_model", "FI_t_X" [Unused] - ! long_name: ice tension internal stress - x component - ! units: Pa -"ice_model", "FI_t_Y" [Unused] - ! long_name: ice tension internal stress - y component - ! units: Pa -"ice_model", "FI_s_X" [Unused] - ! long_name: ice shearing internal stress - x component - ! units: Pa -"ice_model", "FI_s_Y" [Unused] - ! long_name: ice shearing internal stress - y component - ! units: Pa -"ice_model", "str_d" [Unused] - ! long_name: ice divergence internal stress - ! units: Pa m -"ice_model", "str_t" [Unused] - ! long_name: ice tension internal stress - ! units: Pa m -"ice_model", "str_s" [Unused] - ! long_name: ice shearing internal stress - ! units: Pa m -"ice_model", "sh_d" [Unused] - ! long_name: ice divergence strain rate - ! units: s-1 -"ice_model", "sh_t" [Unused] - ! long_name: ice tension strain rate - ! units: s-1 -"ice_model", "sh_s" [Unused] - ! long_name: ice shearing strain rate - ! units: s-1 -"ice_model", "del_sh" [Unused] - ! long_name: ice strain rate magnitude - ! units: s-1 -"ice_model", "del_sh_min" [Unused] - ! long_name: minimum ice strain rate magnitude - ! units: s-1 -"ice_model", "ui_hf" [Unused] - ! long_name: ice velocity - x component - ! units: m/s -"ice_model", "vi_hf" [Unused] - ! long_name: ice velocity - y component - ! units: m/s -"ice_model", "str_d_hf" [Unused] - ! long_name: ice divergence internal stress - ! units: Pa m -"ice_model", "str_t_hf" [Unused] - ! long_name: ice tension internal stress - ! units: Pa m -"ice_model", "str_s_hf" [Unused] - ! long_name: ice shearing internal stress - ! units: Pa m -"ice_model", "sh_d_hf" [Unused] - ! long_name: ice divergence rate - ! units: s-1 -"ice_model", "sh_t_hf" [Unused] - ! long_name: ice tension rate - ! units: s-1 -"ice_model", "sh_s_hf" [Unused] - ! long_name: ice shearing rate - ! units: s-1 -"ice_model", "sigI_hf" [Unused] - ! long_name: first stress invariant - ! units: none -"ice_model", "sigII_hf" [Unused] - ! long_name: second stress invariant - ! units: none -"ice_model", "CI_hf" [Unused] - ! long_name: Summed concentration of ice at t-points - ! units: nondim -"ice_model", "STRENGTH_hf" [Used] - ! long_name: ice strength - ! units: Pa*m -"ice_model", "siu" [Used] - ! long_name: ice velocity - x component - ! units: m/s -"ice_model", "siv" [Used] - ! long_name: ice velocity - y component - ! units: m/s -"ice_model", "sispeed" [Used] - ! long_name: ice speed - ! units: m/s -"ice_model", "IX_TRANS" [Used] - ! long_name: x-direction ice transport - ! units: kg/s -"ice_model", "IY_TRANS" [Used] - ! long_name: y-direction ice transport - ! units: kg/s -"ice_model", "XPRT" [Used] - ! long_name: frozen water transport convergence - ! units: kg/(m^2*yr) -"ice_model", "RDG_RATE" [Unused] - ! long_name: ice ridging rate - ! units: 1/sec -"ice_model", "FA_X" [Used] - ! long_name: Air stress on ice on C-grid - x component - ! units: Pa -"ice_model", "FA_Y" [Used] - ! long_name: Air stress on ice on C-grid - y component - ! units: Pa -"ice_model", "EXT" [Used] - ! long_name: ice modeled - ! units: 0 or 1 -"ice_model", "CN" [Used] - ! long_name: ice concentration - ! units: 0-1 -"ice_model", "HP" [Unused] - ! long_name: pond thickness - ! units: m-pond -"ice_model", "HS" [Unused] - ! long_name: snow thickness - ! units: m-snow -"ice_model", "TSN" [Used] - ! long_name: snow layer temperature - ! units: C -"ice_model", "HI" [Unused] - ! long_name: ice thickness - ! units: m-ice -"ice_model", "sitimefrac" [Used] - ! long_name: time fraction of ice cover - ! units: 0-1 -"ice_model", "siconc" [Used] - ! long_name: ice concentration - ! units: 0-1 -"ice_model", "siconc_CMOR" [Unused] - ! long_name: Sea-Ice Area Percentage - ! units: % - ! standard_name: SeaIceAreaFraction -"ice_model", "sithick" [Used] - ! long_name: ice thickness - ! units: m-ice -"ice_model", "sivol" [Used] - ! long_name: ice volume - ! units: m-ice -"ice_model", "sivol_CMOR" [Unused] - ! long_name: Sea-ice Volume per Area - ! units: m-ice -"ice_model", "sisnconc" [Used] - ! long_name: snow concentration - ! units: 0-1 -"ice_model", "sisnconc_CMOR" [Unused] - ! long_name: Snow Area Percentage - ! units: % - ! standard_name: SurfaceSnowAreaFraction -"ice_model", "sisnthick" [Used] - ! long_name: snow thickness - ! units: m-snow -"ice_model", "T_bulkice" [Unused] - ! long_name: Volume-averaged ice temperature - ! units: C -"ice_model", "S_bulkice" [Unused] - ! long_name: Volume-averaged ice salinity - ! units: g/kg -"ice_model", "T1" [Used] - ! long_name: ice layer 1 temperature - ! units: C -"ice_model", "Sal1" [Unused] - ! long_name: ice layer 1 salinity - ! units: g/kg -"ice_model", "T2" [Used] - ! long_name: ice layer 2 temperature - ! units: C -"ice_model", "Sal2" [Unused] - ! long_name: ice layer 2 salinity - ! units: g/kg -"ice_model", "T3" [Used] - ! long_name: ice layer 3 temperature - ! units: C -"ice_model", "Sal3" [Unused] - ! long_name: ice layer 3 salinity - ! units: g/kg -"ice_model", "T4" [Used] - ! long_name: ice layer 4 temperature - ! units: C -"ice_model", "Sal4" [Unused] - ! long_name: ice layer 4 salinity - ! units: g/kg -"ice_model", "MI" [Unused] - ! long_name: ice + snow mass - ! units: kg/m^2 -"ice_model", "simass" [Used] - ! long_name: ice mass - ! units: kg/m^2 -"ice_model", "simass_n" [Unused] - ! long_name: ice mass - ! units: kg/m^2 -"ice_model", "sisnmass" [Used] - ! long_name: snow mass - ! units: kg/m^2 -"ice_model", "MIB" [Used] - ! long_name: ice + snow + bergs mass - ! units: kg/m^2 -"ice_model", "E2MELT" [Used] - ! long_name: heat needed to melt ice - ! units: J/m^2 diff --git a/exps/NWA12.COBALT/SIS_fast.available_diags b/exps/NWA12.COBALT/SIS_fast.available_diags deleted file mode 100644 index 0b445a523..000000000 --- a/exps/NWA12.COBALT/SIS_fast.available_diags +++ /dev/null @@ -1,57 +0,0 @@ -"ice_model_fast", "SWDN" [Unused] - ! long_name: downward shortwave flux - ! units: W/m^2 -"ice_model_fast", "LWDN" [Unused] - ! long_name: downward longwave flux - ! units: W/m^2 -"ice_model_fast", "ALB" [Unused] - ! long_name: surface albedo - ! units: 0-1 -"ice_model_fast", "coszen" [Unused] - ! long_name: cosine of the solar zenith angle for the next radiation step - ! units: -1:1 -"ice_model_fast", "sw_abs_sfc" [Unused] - ! long_name: SW frac. abs. at the ice surface - ! units: 0-1 -"ice_model_fast", "sw_abs_snow" [Unused] - ! long_name: SW frac. abs. in snow - ! units: 0-1 -"ice_model_fast", "sw_abs_ice1" [Unused] - ! long_name: SW frac. abs. in ice layer 1 - ! units: 0:1 -"ice_model_fast", "sw_abs_ice2" [Unused] - ! long_name: SW frac. abs. in ice layer 2 - ! units: 0:1 -"ice_model_fast", "sw_abs_ice3" [Unused] - ! long_name: SW frac. abs. in ice layer 3 - ! units: 0:1 -"ice_model_fast", "sw_abs_ice4" [Unused] - ! long_name: SW frac. abs. in ice layer 4 - ! units: 0:1 -"ice_model_fast", "sw_pen" [Unused] - ! long_name: SW frac. pen. surf. - ! units: 0:1 -"ice_model_fast", "sw_abs_ocn" [Unused] - ! long_name: SW frac. sent to the ocean - ! units: 0:1 -"ice_model_fast", "alb_vis_dir" [Unused] - ! long_name: ice surface albedo vis_dir - ! units: 0-1 -"ice_model_fast", "alb_vis_dif" [Unused] - ! long_name: ice surface albedo vis_dif - ! units: 0-1 -"ice_model_fast", "alb_nir_dir" [Unused] - ! long_name: ice surface albedo nir_dir - ! units: 0-1 -"ice_model_fast", "alb_nir_dif" [Unused] - ! long_name: ice surface albedo nir_dif - ! units: 0-1 -"ice_model_fast", "Tskin" [Unused] - ! long_name: Skin temperature - ! units: degC -"ice_model_fast", "CN_fast" [Unused] - ! long_name: Category concentration - ! units: 0-1 -"ice_model_fast", "MI_fast" [Unused] - ! long_name: Category concentration - ! units: 0-1 diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.all b/exps/NWA12.COBALT/SIS_parameter_doc.all deleted file mode 100644 index ec37b7fb0..000000000 --- a/exps/NWA12.COBALT/SIS_parameter_doc.all +++ /dev/null @@ -1,560 +0,0 @@ -! This file was written by the model and records all non-layout or debugging parameters used at run-time. - -! === module ice_model === -SPECIFIED_ICE = False ! [Boolean] default = False - ! If true, the ice is specified and there is no dynamics. -CGRID_ICE_DYNAMICS = True ! [Boolean] default = True - ! If true, use a C-grid discretization of the sea-ice dynamics; if false use a - ! B-grid discretization. -USE_SLAB_ICE = False ! [Boolean] default = False - ! If true, use the very old slab-style ice. -SINGLE_ICE_STATE_TYPE = True ! [Boolean] default = True - ! If true, the fast and slow portions of the ice use a single common - ! ice_state_type. Otherwise they point to different ice_state_types that need - ! to be explicitly copied back and forth. -EULERIAN_TSURF = True ! [Boolean] default = True - ! If true, use previous calculations of the ice-top surface skin temperature for - ! tsurf at the start of atmospheric time stepping, including interpolating - ! between tsurf values from other categories in the same location. -ICE_OCEAN_STRESS_STAGGER = "C" ! default = "C" - ! A case-insensitive character string to indicate the staggering of the stress - ! field on the ocean that is returned to the coupler. Valid values include 'A', - ! 'B', or 'C', with a default that follows the value of CGRID_ICE_DYNAMICS. -RHO_OCEAN = 1030.0 ! [kg m-3] default = 1030.0 - ! The nominal density of sea water as used by SIS. -RHO_ICE = 905.0 ! [kg m-3] default = 905.0 - ! The nominal density of sea ice as used by SIS. -RHO_SNOW = 330.0 ! [kg m-3] default = 330.0 - ! The nominal density of snow as used by SIS. -G_EARTH = 9.8 ! [m s-2] default = 9.8 - ! The gravitational acceleration of the Earth. -MOMENTUM_ROUGH_ICE = 1.0E-04 ! [m] default = 1.0E-04 - ! The default momentum roughness length scale for the ocean. -HEAT_ROUGH_ICE = 1.0E-04 ! [m] default = 1.0E-04 - ! The default roughness length scale for the turbulent transfer of heat into the - ! ocean. -CONSTANT_COSZEN_IC = -1.0 ! [nondim] default = -1.0 - ! A constant value to use to initialize the cosine of the solar zenith angle for - ! the first radiation step, or a negative number to use the current time and - ! astronomy. -DT_RADIATION = 3600.0 ! [s] default = 3600.0 - ! The time step with which the shortwave radiation and fields like albedos are - ! updated. Currently this is only used to initialize albedos when there is no - ! restart file. -ICE_KMELT = 240.0 ! [W m-2 K-1] default = 240.0 - ! A constant giving the proportionality of the ocean/ice base heat flux to the - ! tempature difference, given by the product of the heat capacity per unit - ! volume of sea water times a molecular diffusive piston velocity. -ICE_BOUNDS_CHECK = True ! [Boolean] default = True - ! If true, periodically check the values of ice and snow temperatures and - ! thicknesses to ensure that they are sensible, and issue warnings if they are - ! not. This does not change answers, but can increase model run time. -FIRST_DIRECTION = 0 ! default = 0 - ! An integer that indicates which direction goes first in parts of the code that - ! use directionally split updates, with even numbers (or 0) used for x- first - ! and odd numbers used for y-first. -ICE_SEES_ATMOS_WINDS = True ! [Boolean] default = True - ! If true, the sea ice is being given wind stresses with the atmospheric sign - ! convention, and need to have their sign changed. -APPLY_SLP_TO_OCEAN = False ! [Boolean] default = False - ! If true, apply the atmospheric sea level pressure to the ocean. -PASS_STRESS_MAG_TO_OCEAN = False ! [Boolean] default = False - ! If true, provide the time and area weighted mean magnitude of the stresses on - ! the ocean to the ocean. -DO_ICEBERGS = False ! [Boolean] default = False - ! If true, call the iceberg module. -ADD_DIURNAL_SW = False ! [Boolean] default = False - ! If true, add a synthetic diurnal cycle to the shortwave radiation. -DO_SUN_ANGLE_FOR_ALB = False ! [Boolean] default = False - ! If true, find the sun angle for calculating the ocean albedo within the sea - ! ice model. -DO_RIDGING = False ! [Boolean] default = False - ! If true, call the ridging routines. -RESTARTFILE = "ice_model.res.nc" ! default = "ice_model.res.nc" - ! The name of the restart file. -FAST_ICE_RESTARTFILE = "ice_model.res.nc" ! default = "ice_model.res.nc" - ! The name of the restart file for those elements of the the sea ice that are - ! handled by the fast ice PEs. -APPLY_MASKS_AFTER_RESTART = True ! [Boolean] default = True - ! If true, applies masks to mH_ice,mH_snow and part_size after a restart. -WRITE_GEOM = 1 ! default = 1 - ! If =0, never write the geometry and vertical grid files. If =1, write the - ! geometry and vertical grid files only for a new simulation. If =2, always - ! write the geometry and vertical grid files. Other values are invalid. -INTERPOLATE_FLUXES = True ! [Boolean] default = True - ! If true, interpolate a linearized version of the fast fluxes into arealess - ! categories. -REDO_FAST_ICE_UPDATE = False ! [Boolean] default = False - ! If true, recalculate the thermal updates from the fast dynamics on the slowly - ! evolving ice state, rather than copying over the slow ice state to the fast - ! ice state. -READ_HLIM_VALS = False ! [Boolean] default = False - ! If true, read the lower limits on the ice thicknesscategories. -NCAT_ICE = 5 ! [nondim] default = 5 - ! The number of sea ice thickness categories. -NK_ICE = 4 ! [nondim] default = 4 - ! The number of layers within the sea ice. -NK_SNOW = 1 ! [nondim] default = 1 - ! The number of layers within the snow atop the sea ice. -MIN_OCEAN_PARTSIZE = 0.0 ! [nondim] default = 0.0 - ! The minimum value for the fractional open-ocean area. This can be 0, but for - ! some purposes it may be useful to set this to a miniscule value (like 1e-40) - ! that will be lost to roundoff during any sums so that the open ocean fluxes - ! can be used in with new categories. - -! === module MOM_domains === -REENTRANT_X = False ! [Boolean] default = True - ! If true, the domain is zonally reentrant. -REENTRANT_Y = False ! [Boolean] default = False - ! If true, the domain is meridionally reentrant. -TRIPOLAR_N = False ! [Boolean] default = False - ! Use tripolar connectivity at the northern edge of the domain. With - ! TRIPOLAR_N, NIGLOBAL must be even. -NIGLOBAL = 775 ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. -NJGLOBAL = 845 ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. -NIHALO = 4 ! default = 4 - ! The number of halo points on each side in the x-direction. How this is set - ! varies with the calling component and static or dynamic memory configuration. -NJHALO = 4 ! default = 4 - ! The number of halo points on each side in the y-direction. How this is set - ! varies with the calling component and static or dynamic memory configuration. - -! === module MOM_hor_index === -! Sets the horizontal array index types. - -! === module SIS_restart === -PARALLEL_RESTARTFILES = False ! [Boolean] default = False - ! If true, each processor writes its own restart file, otherwise a single - ! restart file is generated -MAX_FIELDS = 100 ! default = 100 - ! The maximum number of restart fields that can be used. -RESTART_CHECKSUMS_REQUIRED = True ! [Boolean] default = True - ! If true, require the restart checksums to match and error out otherwise. Users - ! may want to avoid this comparison if for example the restarts are made from a - ! run with a different mask_table than the current run, in which case the - ! checksums will not match. - -! === module SIS_initialize_fixed === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = False - ! If true, use older code that incorrectly sets the longitude in some points - ! along the tripolar fold to be off by 360 degrees. -RAD_EARTH = 6.378E+06 ! [m] default = 6.378E+06 - ! The radius of the Earth. -TOPO_CONFIG = "file" ! default = "file" - ! This specifies how bathymetry is specified: - ! file - read bathymetric information from the file - ! specified by (TOPO_FILE). - ! flat - flat bottom set to MAXIMUM_DEPTH. - ! bowl - an analytically specified bowl-shaped basin - ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. - ! spoon - a similar shape to 'bowl', but with a vertical - ! wall at the southern face. - ! halfpipe - a zonally uniform channel with a half-sine - ! profile in the meridional direction. -TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" - ! The file from which the bathymetry is read. -TOPO_VARNAME = "depth" ! default = "depth" - ! The name of the bathymetry variable in TOPO_FILE. -TOPO_EDITS_FILE = "" ! default = "" - ! The file from which to read a list of i,j,z topography overrides. -ALLOW_LANDMASK_CHANGES = False ! [Boolean] default = False - ! If true, allow topography overrides to change land mask. -MINIMUM_DEPTH = 0.0 ! [m] default = 0.0 - ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is - ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is - ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than - ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. -MASKING_DEPTH = -9999.0 ! [m] default = -9999.0 - ! The depth below which to mask points as land points, for which all fluxes are - ! zeroed out. MASKING_DEPTH is ignored if it has the special default value. -!MAXIMUM_DEPTH = 6857.396484375 ! [m] - ! The (diagnosed) maximum depth of the ocean. - -! === module SIS_open_boundary === -! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, -! if any. -OBC_NUMBER_OF_SEGMENTS = 0 ! default = 0 - ! The number of open boundary segments. -CHANNEL_CONFIG = "none" ! default = "none" - ! A parameter that determines which set of channels are restricted to specific - ! widths. Options are: - ! none - All channels have the grid width. - ! global_1deg - Sets 16 specific channels appropriate - ! for a 1-degree model, as used in CM2G. - ! list - Read the channel locations and widths from a - ! text file, like MOM_channel_list in the MOM_SIS - ! test case. - ! file - Read open face widths everywhere from a - ! NetCDF file on the model grid. -ROTATION = "2omegasinlat" ! default = "2omegasinlat" - ! This specifies how the Coriolis parameter is specified: - ! 2omegasinlat - Use twice the planetary rotation rate - ! times the sine of latitude. - ! betaplane - Use a beta-plane or f-plane. - ! USER - call a user modified routine. -OMEGA = 7.2921E-05 ! [s-1] default = 7.2921E-05 - ! The rotation rate of the earth. -GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = False - ! If true, use an older algorithm to calculate the sine and cosines needed - ! rotate between grid-oriented directions and true north and east. Differences - ! arise at the tripolar fold. - -! === module hor_grid === -! Parameters providing information about the lateral grid. - -! === module MOM_hor_index === -! Sets the horizontal array index types. -SIS_AVAILABLE_DIAGS_FILE = "SIS.available_diags" ! default = "SIS.available_diags" - ! A file into which to write a list of all available sea ice diagnostics that - ! can be included in a diag_table. - -! === module SIS2_ice_thm (thermo) === -! This sub-module calculates ice thermodynamic quantities. -LATENT_HEAT_FUSION = 3.34E+05 ! [J kg-1] default = 3.34E+05 - ! The latent heat of fusion as used by SIS. -LATENT_HEAT_VAPOR = 2.5E+06 ! [J kg-1] default = 2.5E+06 - ! The latent heat of vaporization of water at 0C as used by SIS. -CP_ICE = 2100.0 ! [J kg-1 K-1] default = 2100.0 - ! The heat capacity of fresh ice, approximated as a constant. -CP_SEAWATER = 4200.0 ! [J kg-1 K-1] default = 4200.0 - ! The heat capacity of sea water, approximated as a constant. -CP_BRINE = 4200.0 ! [J kg-1 K-1] default = 4200.0 - ! The heat capacity of water in brine pockets within the sea-ice, approximated - ! as a constant. CP_BRINE and CP_SEAWATER should be equal, but for - ! computational convenience CP_BRINE can be set equal to CP_ICE. -DTFREEZE_DS = -0.054 ! [deg C PSU-1] default = -0.054 - ! The derivative of the freezing temperature with salinity. -ENTHALPY_LIQUID_0 = 0.0 ! [J kg-1] default = 0.0 - ! The enthalpy of liquid fresh water at 0 C. The solutions should be physically - ! consistent when this is adjusted, because only the relative value is of - ! physical meaning, but roundoff errors can change the solution. -SUBLIMATION_BUG = False ! [Boolean] default = False - ! If true use an older calculation that omits the latent heat of fusion from the - ! latent heat of sublimation. This variable should be obsoleted as soon as - ! possible. - -! === module SIS_tracer_registry === - -! === module SIS_tracer_flow_control === -USE_ICE_AGE_TRACER = False ! [Boolean] default = False - ! If true, use the concentration based age tracer package. -SIS_FAST_AVAILABLE_DIAGS_FILE = "SIS_fast.available_diags" ! default = "SIS_fast.available_diags" - ! A file into which to write a list of all available sea ice diagnostics that - ! can be included in a diag_table. -CONCENTRATION_INIT_CONFIG = "data_override" ! default = "data_override" - ! A string that determines how the initial total sea ice concentration is - ! initialized for a new run: - ! file - read sea ice concentrations from a specified file - ! data_override - use the data_override capability or zero everywhere - ! zero - there is no sea ice anywhere - ! latitudes - initial sea ice concentration is a function of latitude. -ICE_THICKNESS_INIT_CONFIG = "data_override" ! default = "data_override" - ! A string that determines how the initial sea ice thickness is initialized for - ! a new run: - ! file - read sea ice thickesses from a specified file - ! data_override - use the data_override capability or zero everywhere - ! uniform - sea ice has uniform thickness where the concentration is - ! nonzero. -SNOW_THICKNESS_INIT_CONFIG = "data_override" ! default = "data_override" - ! A string that determines how the initial total snow thickness is initialized - ! for a new run: - ! file - read sea ice concentrations from a specified file - ! data_override - use the data_override capability or zero everywhere - ! uniform - snow has uniform thickness where the concentration is nonzero. -ICE_SALINITY_INIT_CONFIG = "uniform" ! default = "uniform" - ! A string that determines how the sea ice salinity is initialized for a new - ! run: - ! uniform - Use a constant ice salinity initial condition - ! file - Read sea ice salinities from a specified file - ! data_override - use the data_override capability or zero everywhere. -ICE_ENTHALPY_INIT_CONFIG = "uniform_temp" ! default = "uniform_temp" - ! A string that determines how the sea ice enthalpy is initialized for a new - ! run: - ! uniform_temp - Use a constant ice temperature initial condition - ! relative_temp - Use an ice temperature initial condition with a - ! specified depression below the bulk ice freezing point - ! file - Read sea ice temperatures or enthalpies from a specified file - ! data_override - use the data_override capability or freezing enthalpy - ! everywhere. -SNOW_ENTHALPY_INIT_CONFIG = "uniform_temp" ! default = "uniform_temp" - ! A string that determines how the snow enthalpy is initialized for a new run: - ! uniform_temp - Use a constant ice temperature initial condition - ! relative_temp - Use an ice temperature initial condition with a - ! specified depression below the bulk ice freezing point - ! file - Read sea ice temperatures or enthalpies from a specified file - ! data_override - use the data_override capability or freezing enthalpy - ! everywhere. -ICE_SALINITY_IC = 0.0 ! [g kg-1] default = 0.0 - ! The uniform sea ice salinity used for the initial condition -ICE_TEMPERATURE_IC = -4.0 ! [degC] default = -4.0 - ! The uniform sea ice and snow temperature used for the initial condition - -! === module SIS_slow_thermo === -! This module calculates the slow evolution of the ice mass, heat, and salt budgets. -ICE_BULK_SALINITY = 0.0 ! [g/kg] default = 4.0 - ! The fixed bulk salinity of sea ice. -ICE_RELATIVE_SALINITY = 0.1 ! [nondim] default = 0.0 - ! The initial salinity of sea ice as a fraction of the salinity of the seawater - ! from which it formed. -SIS2_FILLING_FRAZIL = True ! [Boolean] default = True - ! If true, apply frazil to fill as many categories as possible to fill in a - ! uniform (minimum) amount of ice in all the thinnest categories. Otherwise the - ! frazil is always assigned to a single category. -FILLING_FRAZIL_TIMESCALE = 0.0 ! [s] default = 0.0 - ! A timescale with which the filling frazil causes the thinest cells to attain - ! similar thicknesses, or a negative number to apply the frazil flux uniformly. -APPLY_ICE_LIMIT = False ! [Boolean] default = False - ! If true, restore the sea ice state toward climatology. -DO_ICE_RESTORE = False ! [Boolean] default = False - ! If true, restore the sea ice state toward climatology. -NUDGE_SEA_ICE = False ! [Boolean] default = False - ! If true, constrain the sea ice concentrations using observations. -TRANSMUTE_SEA_ICE = False ! [Boolean] default = False - ! If true, allow ice to be transmuted directly into seawater with a spatially - ! varying rate as a form of outflow open boundary condition. - -! === module SIS2_ice_thm (updates) === -! This sub-module does updates of the sea-ice due to thermodynamic changes. -SNOW_CONDUCTIVITY = 0.31 ! [W m-1 K-1] default = 0.31 - ! The conductivity of heat in snow. -ICE_CONDUCTIVITY = 2.03 ! [W m-1 K-1] default = 2.03 - ! The conductivity of heat in ice. -MIN_H_FOR_TEMP_CALC = 0.0 ! [m] default = 0.0 - ! The minimum ice thickness at which to do temperature calculations. -DO_POND = False ! [Boolean] default = False - ! If true, calculate melt ponds and use them for shortwave radiation - ! calculation. -TDRAIN = -0.8 ! [degC] default = -0.8 - ! Melt ponds drain to sea level when ice average temp. exceeds TDRAIN (stand-in - ! for mushy layer thermo) -R_MIN_POND = 0.15 ! [nondim] default = 0.15 - ! Minimum retention rate of surface water sources in melt pond (retention scales - ! linearly with ice cover) -R_MAX_POND = 0.9 ! [nondim] default = 0.9 - ! Maximum retention rate of surface water sources in melt pond (retention scales - ! linearly with ice cover) -MIN_POND_FRAC = 0.2 ! [nondim] default = 0.2 - ! Minimum melt pond cover (by ponds at sea level) pond drains to this when ice - ! is porous. -MAX_POND_FRAC = 0.5 ! [nondim] default = 0.5 - ! Maximum melt pond cover - associated with pond volume that suppresses ice top - ! to waterline -ICE_TEMP_RANGE_ESTIMATE = 40.0 ! [degC] default = 40.0 - ! An estimate of the range of snow and ice temperatures that is used to evaluate - ! whether an explicit diffusive form of the heat fluxes or an inversion based on - ! the layer heat budget is more likely to be more accurate. Setting this to 0 - ! causes the explicit diffusive form. to always be used. - -! === module SIS_dyn_trans === -! This module updates the ice momentum and does ice transport. -DT_ICE_DYNAMICS = 600.0 ! [seconds] default = -1.0 - ! The time step used for the slow ice dynamics, including stepping the - ! continuity equation and interactions between the ice mass field and - ! velocities. If 0 or negative the coupling time step will be used. -MERGED_CONTINUITY = False ! [Boolean] default = False - ! If true, update the continuity equations for the ice, snow, and melt pond - ! water together summed across categories, with proportionate fluxes for each - ! part. Otherwise the media are updated separately. -NSTEPS_ADV = 1 ! default = 1 - ! The number of advective iterations for each slow dynamics time step. -ICEBERG_WINDSTRESS_BUG = False ! [Boolean] default = False - ! If true, use older code that applied an old ice-ocean stress to the icebergs - ! in place of the current air-ocean stress. This option is here for backward - ! compatibility, but should be avoided. -WARSAW_SUM_ORDER = True ! [Boolean] default = True - ! If true, use the order of sums in the Warsaw version of SIS2. The default is - ! the opposite of MERGED_CONTINUITY. This option exists for backward - ! compatibilty but may eventually be obsoleted. -TIMEUNIT = 8.64E+04 ! [s] default = 8.64E+04 - ! The time unit for ICE_STATS_INTERVAL. -ICE_STATS_INTERVAL = 10.0 ! [days] default = 1.0 - ! The interval in units of TIMEUNIT between writes of the globally summed ice - ! statistics and conservation checks. -DT_RHEOLOGY = 50.0 ! [seconds] default = -1.0 - ! The sub-cycling time step for iterating the rheology and ice momentum - ! equations. If DT_RHEOLOGY is negative, the time step is set via NSTEPS_DYN. -ICE_TDAMP_ELASTIC = -0.2 ! [s or nondim] default = -0.2 - ! The damping timescale associated with the elastic terms in the sea-ice - ! dynamics equations (if positive) or the fraction of DT_ICE_DYNAMICS (if - ! negative). -WEAK_LOW_SHEAR_ICE = False ! [Boolean] default = False - ! If true, the divergent stresses go toward 0 in the C-grid dynamics when the - ! shear magnitudes are very weak. Otherwise they go to -P_ice. This setting is - ! temporary. -PROJECT_ICE_DRAG_VEL = True ! [Boolean] default = True - ! If true, project forward the ice velocity used in the drag calculation to - ! avoid an instability that can occur when a finite stress is applied to thin - ! ice moving with the velocity of the ocean. -ICE_YIELD_ELLIPTICITY = 2.0 ! [Nondim] default = 2.0 - ! The ellipticity coefficient for the plastic yield curve in the sea-ice - ! rheology. For an infinite ellipticity (i.e., a cavitating fluid rheology), - ! use 0. -ICE_STRENGTH_PSTAR = 2.75E+04 ! [Pa] default = 2.75E+04 - ! A constant in the expression for the ice strength, P* in Hunke & Dukowicz - ! 1997. -ICE_STRENGTH_CSTAR = 20.0 ! [nondim] default = 20.0 - ! A constant in the exponent of the expression for the ice strength, c* in Hunke - ! & Dukowicz 1997. -ICE_CDRAG_WATER = 0.00324 ! [nondim] default = 0.00324 - ! The drag coefficient between the sea ice and water. -MIN_OCN_INTERTIAL_H = 0.0 ! [m] default = 0.0 - ! A minimum ocean thickness used to limit the viscous coupling rate implied for - ! the ocean by the ice-ocean stress. Only used if positive. -ICE_DEL_SH_MIN_SCALE = 2.0 ! [nondim] default = 2.0 - ! A scaling factor for the lower bound on the shear rates used in the - ! denominator of the stress calculation. This probably needs to be greater than - ! 1. -PROJECT_ICE_CONCENTRATION = True ! [Boolean] default = True - ! If true, project the evolution of the ice concentration due to the convergence - ! or divergence of the ice flow. -VEL_UNDERFLOW = 0.0 ! [m s-1] default = 0.0 - ! A negligibly small velocity magnitude below which velocity components are set - ! to 0. A reasonable value might be 1e-30 m/s, which is less than an Angstrom - ! divided by the age of the universe. -STRESS_UNDERFLOW = 0.0 ! [Pa m] default = 0.0 - ! A negligibly small magnitude below which ice stress tensor components are set - ! to 0. A reasonable value might be 1e-15 kg m-1 s-1 times vel_underflow. -CFL_TRUNCATE = 0.5 ! [nondim] default = 0.5 - ! The value of the CFL number that will cause ice velocity components to be - ! truncated; instability can occur past 0.5. -CFL_TRUNC_DYN_ITS = False ! [Boolean] default = False - ! If true, check the CFL number for every iteration of the rheology solver; - ! otherwise only the final velocities that are used for transport are checked. -LEMIEUX_LANDFAST = False ! [Boolean] default = False - ! If true, turn on Lemieux landfast ice parameterization. -ITD_LANDFAST = False ! [Boolean] default = False - ! If true, turn on probabilistic landfast ice parameterization. -RECATEGORIZE_ICE = True ! [Boolean] default = True - ! If true, readjust the distribution into ice thickness categories after - ! advection. -SEA_ICE_ROLL_FACTOR = 1.0 ! [Nondim] default = 1.0 - ! A factor by which the propensity of small amounts of thick sea-ice to become - ! thinner by rolling is increased or 0 to disable rolling. This can be thought - ! of as the minimum number of ice floes in a grid cell divided by the horizontal - ! floe aspect ratio. Sensible values are 0 (no rolling) or larger than 1. -ICE_COVER_DISCARD = -1.0 ! [nondim] default = -1.0 - ! A tiny fractional ice coverage which if positive causes the mass in categories - ! with less than this coverage to be discarded. -SIS_THICKNESS_ADVECTION_SCHEME = "PCM" ! default = "UPWIND_2D" - ! The horizontal transport scheme for thickness: - ! UPWIND_2D - Non-directionally split upwind - ! PCM - Directionally split piecewise constant - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) -INCONSISTENT_COVER_BUG = False ! [Boolean] default = False - ! If true, omit a recalculation of the fractional ice-free areal coverage after - ! the adjustment of the ice categories. -SIS_CONTINUITY_SCHEME = "PCM" ! default = "UPWIND_2D" - ! The horizontal transport scheme used in continuity: - ! UPWIND_2D - Non-directionally split upwind - ! PCM - Directionally split piecewise constant - ! PPM:C2PD - Positive definite PPM with 2nd order edge values - ! PPM:C2MO - Monotonic PPM with 2nd order edge values -CONT_PPM_VOLUME_BASED_CFL = False ! [Boolean] default = False - ! If true, use the ratio of the open face lengths to the tracer cell areas when - ! estimating CFL numbers. -CONTINUITY_H_NEGLECT = 0.0 ! [kg m-2] default = 0.0 - ! The category ice mass per ocean cell area below which the transport within - ! this thickness category of out of a cell is set to zero. A suggested - ! non-default value might be of order 3e-32 kg m-2, which is one molecule of ice - ! per square kilometer. -CONTINUITY_FRAC_NEGLECT = 0.0 ! [nondim] default = 0.0 - ! When the total fluxes are distributed between categories with - ! MERGED_CONTINUITY, any category whose ice is less than this fraction of the - ! total mass contributes no flux. Without MERGED_CONTINUITY, any snow or melt - ! pond transport that is less than this fraction of the ice transport is zeroed - ! out. A suggested non-default value might be of order 1e-20. - -! === module SIS_tracer_advect === -SIS_TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "UPWIND_2D" - ! The horizontal transport scheme for tracers: - ! UPWIND_2D - Non-directionally split upwind - ! PCM - Directionally split piecewise constant - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) -CFL_MASS_NEGLECT_BUG = False ! [Boolean] default = False - ! If true use a globally constant negligible volume in the denominator of the - ! tracer advection CFL calculation, reproducing an older incorrect expression, - ! rather than using a proper scaling of this negligible mass with cell area. -ADCROFT_ADVECTIVE_CFL = False ! [Boolean] default = False - ! If true use the Adcroft reciprocal of the cell mass when calculating the - ! advective CFL numbers used in PPM tracer advection schemes, rather than adding - ! a small mass in the denominator of the advective CFL ratio. - -! === module SIS_sum_output === -WRITE_STOCKS = True ! [Boolean] default = True - ! If true, write the integrated tracer amounts to stdout when the statistics - ! files are written. -STDOUT_HEARTBEAT = True ! [Boolean] default = True - ! If true, periodically write sea ice statistics to stdout to allow the progress - ! to be seen. -MAXTRUNC = 200 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between writing ice statistics. Set - ! MAXTRUNC to 0 to stop if there is any truncation of sea ice velocities. -STATISTICS_FILE = "seaice.stats" ! default = "seaice.stats" - ! The file to use to write the globally integrated statistics. - -! === module SIS_ice_diagnostics === -! This module handles sea-ice state diagnostics. - -! === module SIS_fast_thermo === -! This module applies rapidly varying heat fluxes to the ice and does an implicit surface temperature -! calculation. -REORDER_0C_HEATFLUX = False ! [Boolean] default = False - ! If true, rearrange the calculation of the heat fluxes projected back to 0C to - ! work on each contribution separately, so that they can be indentically - ! replicated if there is a single fast timestep per coupled timestep and - ! REDO_FAST_ICE_UPDATE=True. -MAX_TSKIN_ITT = 10 ! default = 10 - ! The maximum number of iterations of the skin temperature and optical - ! properties during redo_update_ice_model_fast. - -! === module SIS2_ice_thm (updates) === -! This sub-module does updates of the sea-ice due to thermodynamic changes. - -! === module SIS_optics === -! This module calculates the albedo and absorption profiles for shortwave radiation. -DO_DELTA_EDDINGTON_SW = True ! [Boolean] default = True - ! If true, a delta-Eddington radiative transfer calculation for the shortwave - ! radiation within the sea-ice. -ICE_DELTA_EDD_R_ICE = 1.0 ! [nondimensional] default = 0.0 - ! A dreadfully documented tuning parameter for the radiative propeties of sea - ! ice with the delta-Eddington radiative transfer calculation. -ICE_DELTA_EDD_R_SNOW = 1.0 ! [nondimensional] default = 0.0 - ! A dreadfully documented tuning parameter for the radiative propeties of snow - ! on sea ice with the delta-Eddington radiative transfer calculation. -ICE_DELTA_EDD_R_POND = 1.0 ! [nondimensional] default = 0.0 - ! A dreadfully documented tuning parameter for the radiative propeties of - ! meltwater ponds on sea ice with the delta-Eddington radiative transfer - ! calculation. - -! === module MOM_file_parser === -SEND_LOG_TO_STDOUT = False ! [Boolean] default = False - ! If true, all log messages are also sent to stdout. -DOCUMENT_FILE = "SIS_parameter_doc" ! default = "SIS_parameter_doc" - ! The basename for files where run-time parameters, their settings, units and - ! defaults are documented. Blank will disable all parameter documentation. -COMPLETE_DOCUMENTATION = True ! [Boolean] default = True - ! If true, all run-time parameters are documented in SIS_parameter_doc.all . -MINIMAL_DOCUMENTATION = True ! [Boolean] default = True - ! If true, non-default run-time parameters are documented in - ! SIS_parameter_doc.short . diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.debugging b/exps/NWA12.COBALT/SIS_parameter_doc.debugging deleted file mode 100644 index ff3f203b2..000000000 --- a/exps/NWA12.COBALT/SIS_parameter_doc.debugging +++ /dev/null @@ -1,66 +0,0 @@ -! This file was written by the model and records the debugging parameters used at run-time. - -! === module MOM_unit_scaling === -! Parameters for doing unit scaling of variables. -Z_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! depths and heights. Valid values range from -300 to 300. -L_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! lateral distances. Valid values range from -300 to 300. -T_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! time. Valid values range from -300 to 300. -R_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! density. Valid values range from -300 to 300. -Q_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! heat content. Valid values range from -300 to 300. -C_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! temperature. Valid values range from -300 to 300. -S_RESCALE_POWER = 0 ! default = 0 - ! An integer power of 2 that is used to rescale the model's internal units of - ! salinity. Valid values range from -300 to 300. -DEBUG = False ! [Boolean] default = False - ! If true, write out verbose debugging data. -DEBUG_SLOW_ICE = False ! [Boolean] default = False - ! If true, write out verbose debugging data on the slow ice PEs. -DEBUG_FAST_ICE = False ! [Boolean] default = False - ! If true, write out verbose debugging data on the fast ice PEs. -DEBUG_CHKSUMS = False ! [Boolean] default = False - ! If true, checksums are performed on arrays in the various vec_chksum routines. -DEBUG_REDUNDANT = False ! [Boolean] default = False - ! If true, debug redundant data points during calls to the various vec_chksum - ! routines. -COLUMN_CHECK = False ! [Boolean] default = False - ! If true, add code to allow debugging of conservation column-by-column. This - ! does not change answers, but can increase model run time. -IMBALANCE_TOLERANCE = 1.0E-09 ! [nondim] default = 1.0E-09 - ! The tolerance for imbalances to be flagged by COLUMN_CHECK. -VERBOSE = False ! [Boolean] default = False - ! If true, write out verbose diagnostics. -DEBUG_EVP_SUBSTEPS = False ! [Boolean] default = False - ! If true, write out verbose debugging data for each of the steps within the EVP - ! solver. -U_TRUNC_FILE = "SIS_U_truncations" ! default = "" - ! The absolute path to the file where the accelerations leading to zonal - ! velocity truncations are written. Leave this empty for efficiency if this - ! diagnostic is not needed. -V_TRUNC_FILE = "SIS_V_truncations" ! default = "" - ! The absolute path to the file where the accelerations leading to meridional - ! velocity truncations are written. Leave this empty for efficiency if this - ! diagnostic is not needed. -MAX_TRUNC_FILE_SIZE_PER_PE = 50 ! default = 50 - ! The maximum number of colums of truncations that any PE will write out during - ! a run. -CHECK_ICE_TRANSPORT_CONSERVATION = False ! [Boolean] default = False - ! If true, use add multiple diagnostics of ice and snow mass conservation in the - ! sea-ice transport code. This is expensive and should be used sparingly. - -! === module MOM_file_parser === -REPORT_UNUSED_PARAMS = True ! [Boolean] default = True - ! If true, report any parameter lines that are not used in the run. -FATAL_UNUSED_PARAMS = False ! [Boolean] default = False - ! If true, kill the run if there are any unused parameters. diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.layout b/exps/NWA12.COBALT/SIS_parameter_doc.layout deleted file mode 100644 index dd0469232..000000000 --- a/exps/NWA12.COBALT/SIS_parameter_doc.layout +++ /dev/null @@ -1,51 +0,0 @@ -! This file was written by the model and records the layout parameters used at run-time. -GLOBAL_INDEXING = False ! [Boolean] default = False - ! If true, use a global lateral indexing convention, so that corresponding - ! points on different processors have the same index. This does not work with - ! static memory. - -! === module MOM_domains === -!SYMMETRIC_MEMORY_ = True ! [Boolean] - ! If defined, the velocity point data domain includes every face of the - ! thickness points. In other words, some arrays are larger than others, - ! depending on where they are on the staggered grid. Also, the starting index - ! of the velocity-point arrays is usually 0, not 1. This can only be set at - ! compile time. -NONBLOCKING_UPDATES = False ! [Boolean] default = False - ! If true, non-blocking halo updates may be used. -THIN_HALO_UPDATES = True ! [Boolean] default = True - ! If true, optional arguments may be used to specify the width of the halos that - ! are updated with each call. -!STATIC_MEMORY_ = False ! [Boolean] - ! If STATIC_MEMORY_ is defined, the principle variables will have sizes that are - ! statically determined at compile time. Otherwise the sizes are not determined - ! until run time. The STATIC option is substantially faster, but does not allow - ! the PE count to be changed at run time. This can only be set at compile time. -MASKTABLE = "mask_table.854.50x50" ! default = "MOM_mask_table" - ! A text file to specify n_mask, layout and mask_list. This feature masks out - ! processors that contain only land points. The first line of mask_table is the - ! number of regions to be masked out. The second line is the layout of the model - ! and must be consistent with the actual model layout. The following (n_mask) - ! lines give the logical positions of the processors that are masked out. The - ! mask_table can be created by tools like check_mask. The following example of - ! mask_table masks out 2 processors, (1,2) and (3,6), out of the 24 in a 4x6 - ! layout: - ! 2 - ! 4,6 - ! 1,2 - ! 3,6 -NIPROC = 50 ! - ! The number of processors in the x-direction. With STATIC_MEMORY_ this is set - ! in SIS2_memory.h at compile time. -NJPROC = 50 ! - ! The number of processors in the y-direction. With STATIC_MEMORY_ this is set - ! in SIS2_memory.h at compile time. -LAYOUT = 50, 50 ! - ! The processor layout that was actually used. -IO_LAYOUT = 1, 1 ! default = 1 - ! The processor layout to be used, or 0,0 to automatically set the io_layout to - ! be the same as the layout. -NIBLOCK = 1 ! default = 1 - ! The number of blocks in the x-direction on each processor (for openmp). -NJBLOCK = 1 ! default = 1 - ! The number of blocks in the y-direction on each processor (for openmp). diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.short b/exps/NWA12.COBALT/SIS_parameter_doc.short deleted file mode 100644 index 7aa34b2e1..000000000 --- a/exps/NWA12.COBALT/SIS_parameter_doc.short +++ /dev/null @@ -1,116 +0,0 @@ -! This file was written by the model and records the non-default parameters used at run-time. - -! === module ice_model === - -! === module MOM_domains === -REENTRANT_X = False ! [Boolean] default = True - ! If true, the domain is zonally reentrant. -NIGLOBAL = 775 ! - ! The total number of thickness grid points in the x-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. -NJGLOBAL = 845 ! - ! The total number of thickness grid points in the y-direction in the physical - ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. - -! === module SIS_initialize_fixed === -INPUTDIR = "INPUT" ! default = "." - ! The directory in which input files are found. - -! === module MOM_grid_init === -GRID_CONFIG = "mosaic" ! - ! A character string that determines the method for defining the horizontal - ! grid. Current options are: - ! mosaic - read the grid from a mosaic (supergrid) - ! file set by GRID_FILE. - ! cartesian - use a (flat) Cartesian grid. - ! spherical - use a simple spherical grid. - ! mercator - use a Mercator spherical grid. -GRID_FILE = "ocean_hgrid.nc" ! - ! Name of the file from which to read horizontal grid data. -TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" - ! The file from which the bathymetry is read. -!MAXIMUM_DEPTH = 6857.396484375 ! [m] - ! The (diagnosed) maximum depth of the ocean. - -! === module hor_grid === -! Parameters providing information about the lateral grid. - -! === module SIS2_ice_thm (thermo) === -! This sub-module calculates ice thermodynamic quantities. - -! === module SIS_tracer_registry === - -! === module SIS_tracer_flow_control === - -! === module SIS_slow_thermo === -! This module calculates the slow evolution of the ice mass, heat, and salt budgets. -ICE_BULK_SALINITY = 0.0 ! [g/kg] default = 4.0 - ! The fixed bulk salinity of sea ice. -ICE_RELATIVE_SALINITY = 0.1 ! [nondim] default = 0.0 - ! The initial salinity of sea ice as a fraction of the salinity of the seawater - ! from which it formed. - -! === module SIS2_ice_thm (updates) === -! This sub-module does updates of the sea-ice due to thermodynamic changes. - -! === module SIS_dyn_trans === -! This module updates the ice momentum and does ice transport. -DT_ICE_DYNAMICS = 600.0 ! [seconds] default = -1.0 - ! The time step used for the slow ice dynamics, including stepping the - ! continuity equation and interactions between the ice mass field and - ! velocities. If 0 or negative the coupling time step will be used. -ICE_STATS_INTERVAL = 10.0 ! [days] default = 1.0 - ! The interval in units of TIMEUNIT between writes of the globally summed ice - ! statistics and conservation checks. -DT_RHEOLOGY = 50.0 ! [seconds] default = -1.0 - ! The sub-cycling time step for iterating the rheology and ice momentum - ! equations. If DT_RHEOLOGY is negative, the time step is set via NSTEPS_DYN. -SIS_THICKNESS_ADVECTION_SCHEME = "PCM" ! default = "UPWIND_2D" - ! The horizontal transport scheme for thickness: - ! UPWIND_2D - Non-directionally split upwind - ! PCM - Directionally split piecewise constant - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) -SIS_CONTINUITY_SCHEME = "PCM" ! default = "UPWIND_2D" - ! The horizontal transport scheme used in continuity: - ! UPWIND_2D - Non-directionally split upwind - ! PCM - Directionally split piecewise constant - ! PPM:C2PD - Positive definite PPM with 2nd order edge values - ! PPM:C2MO - Monotonic PPM with 2nd order edge values - -! === module SIS_tracer_advect === -SIS_TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "UPWIND_2D" - ! The horizontal transport scheme for tracers: - ! UPWIND_2D - Non-directionally split upwind - ! PCM - Directionally split piecewise constant - ! PLM - Piecewise Linear Method - ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) - -! === module SIS_sum_output === -MAXTRUNC = 200 ! [truncations save_interval-1] default = 0 - ! The run will be stopped, and the day set to a very large value if the velocity - ! is truncated more than MAXTRUNC times between writing ice statistics. Set - ! MAXTRUNC to 0 to stop if there is any truncation of sea ice velocities. - -! === module SIS_ice_diagnostics === -! This module handles sea-ice state diagnostics. - -! === module SIS_fast_thermo === -! This module applies rapidly varying heat fluxes to the ice and does an implicit surface temperature -! calculation. - -! === module SIS2_ice_thm (updates) === -! This sub-module does updates of the sea-ice due to thermodynamic changes. - -! === module SIS_optics === -! This module calculates the albedo and absorption profiles for shortwave radiation. -ICE_DELTA_EDD_R_ICE = 1.0 ! [nondimensional] default = 0.0 - ! A dreadfully documented tuning parameter for the radiative propeties of sea - ! ice with the delta-Eddington radiative transfer calculation. -ICE_DELTA_EDD_R_SNOW = 1.0 ! [nondimensional] default = 0.0 - ! A dreadfully documented tuning parameter for the radiative propeties of snow - ! on sea ice with the delta-Eddington radiative transfer calculation. -ICE_DELTA_EDD_R_POND = 1.0 ! [nondimensional] default = 0.0 - ! A dreadfully documented tuning parameter for the radiative propeties of - ! meltwater ponds on sea ice with the delta-Eddington radiative transfer - ! calculation. diff --git a/exps/NWA12.COBALT/diag_table b/exps/NWA12.COBALT/diag_table index ec2c52c09..8efa1811c 100644 --- a/exps/NWA12.COBALT/diag_table +++ b/exps/NWA12.COBALT/diag_table @@ -1,1275 +1,2 @@ CEFI_NWA12_COBALT_V1 1993 1 1 0 0 0 - #============================================================================================================================= -# OBGC/COBALT DIAG Table (CAS, 1/17/2018) -#========================================================================================== -#========================================================================================== -# Proposed ESM4 production diagnostics (CAS, 1/11/18) -#========================================================================================== -"ocean_cobalt_sfc", 1, "months", 1, "days", "time", -"ocean_cobalt_btm", 1, "months", 1, "days", "time", -"ocean_cobalt_tracers_int", 1, "months", 1, "days", "time", -"ocean_cobalt_fluxes_int", 1, "months", 1, "days", "time", -"ocean_cobalt_fdet_100", 1, "months", 1, "days", "time", -"ocean_cobalt_tracers_month_z", 1, "months", 1, "days", "time", -"ocean_cobalt_tracers_instant",12, "months", 1, "days", "time", -"ocean_cobalt_daily_2d", 24, "hours", 1, "days", "time", -# -#====================== -# GENERIC OCEAN COBALT DIAGNOSTICS -#====================== -# -# "generic_cobalt","mld03", "mld03", "ocean_cobalt_daily_2d","all","mean","none",2 -# "generic_cobalt","sfc_chl", "sfc_chl", "ocean_cobalt_daily_2d","all","mean","none",2 -# "generic_cobalt","sfc_chl_lgp", "sfc_chl_lgp", "ocean_cobalt_daily_2d","all","mean","none",2 -# "generic_cobalt","sfc_chl_mdp", "sfc_chl_mdp", "ocean_cobalt_daily_2d","all","mean","none",2 -# "generic_cobalt","sfc_chl_smp", "sfc_chl_smp", "ocean_cobalt_daily_2d","all","mean","none",2 -# "generic_cobalt","sfc_chl_di", "sfc_chl_di", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "phos", "phos", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "no3os", "no3os", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "pco2surf", "pco2surf", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "mesozoo_200", "mesozoo_200", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "btm_o2", "btm_o2", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "btm_co3_sol_arag", "btm_co3_sol_arag", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "btm_co3_sol_calc", "btm_co3_sol_calc", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "btm_co3_ion", "btm_co3_ion", "ocean_cobalt_daily_2d","all","mean","none",2 -"generic_cobalt", "btm_htotal", "btm_htotal", "ocean_cobalt_daily_2d","all","mean","none",2 -#=================== -# Generic COBALT surface fields: -#================== - "generic_cobalt","dic_csurf", "dic_csurf", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dic_deltap", "dic_deltap", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dic_kw", "dic_kw", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dic_sc_no", "dic_sc_no", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","pco2surf", "pco2surf", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","o2_alpha", "o2_alpha", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","o2_csurf", "o2_csurf", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","o2_deltap", "o2_deltap", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","o2_kw", "o2_kw", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","o2_sc_no", "o2_sc_no", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dic_stf_gas", "dic_stf_gas", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","o2_stf_gas", "o2_stf_gas", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_dry_fed", "dep_dry_fed", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_dry_nh4", "dep_dry_nh4", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_dry_no3", "dep_dry_no3", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_dry_po4", "dep_dry_po4", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_dry_lith", "dep_dry_lith", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_wet_fed", "dep_wet_fed", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_wet_nh4", "dep_wet_nh4", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_wet_no3", "dep_wet_no3", "ocean_cobalt_sfc","all","mean","none",2 - # no wet dep of po4 - #"generic_cobalt","dep_wet_po4", "dep_wet_po4", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","dep_wet_lith", "dep_wet_lith", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_alk", "runoff_flux_alk", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_dic", "runoff_flux_dic", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_fed", "runoff_flux_fed", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_lith", "runoff_flux_lith", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_no3", "runoff_flux_no3", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_ldon", "runoff_flux_ldon", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_sldon", "runoff_flux_sldon","ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_srdon", "runoff_flux_srdon","ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_ndet", "runoff_flux_ndet", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_pdet", "runoff_flux_pdet", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_po4", "runoff_flux_po4", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_ldop", "runoff_flux_ldop", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_sldop", "runoff_flux_sldop","ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","runoff_flux_srdop", "runoff_flux_srdop","ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_def_fe_di", "sfc_def_fe_di", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_def_fe_lgp", "sfc_def_fe_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_def_fe_mdp", "sfc_def_fe_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_def_fe_smp", "sfc_def_fe_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_felim_di", "sfc_felim_di", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_felim_lgp", "sfc_felim_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_felim_mdp", "sfc_felim_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_felim_smp", "sfc_felim_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_irrlim_di", "sfc_irrlim_di", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_irrlim_lgp", "sfc_irrlim_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_irrlim_mdp", "sfc_irrlim_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_irrlim_smp", "sfc_irrlim_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_theta_di", "sfc_theta_di", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_theta_lgp", "sfc_theta_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_theta_mdp", "sfc_theta_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_theta_smp", "sfc_theta_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_mu_di", "sfc_mu_di", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_mu_lgp", "sfc_mu_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_mu_mdp", "sfc_mu_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_mu_smp", "sfc_mu_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_nh4lim_lgp", "sfc_nh4lim_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_nh4lim_mdp", "sfc_nh4lim_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_nh4lim_smp", "sfc_nh4lim_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_no3lim_lgp", "sfc_no3lim_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_no3lim_mdp", "sfc_no3lim_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_no3lim_smp", "sfc_no3lim_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_po4lim_di", "sfc_po4lim_di", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_po4lim_lgp", "sfc_po4lim_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_po4lim_mdp", "sfc_po4lim_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_po4lim_smp", "sfc_po4lim_smp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_q_fe_2_n_di", "sfc_q_fe_2_n_di", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_q_fe_2_n_lgp", "sfc_q_fe_2_n_lgp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_q_fe_2_n_mdp", "sfc_q_fe_2_n_mdp", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_q_fe_2_n_smp", "sfc_q_fe_2_n_smp", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","pka_nh3", "pka_nh3", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","nh4_stf", "nh4_stf", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","nh4_stf_gas", "nh4_stf_gas", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","nh4_alpha", "nh4_alpha", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","nh4_csurf", "nh4_csurf", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","nh4_deltap", "nh4_deltap", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","nh4_kw", "nh4_kw", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","nh4_sc_no", "nh4_sc_no", "ocean_cobalt_sfc","all","mean","none",2 -# "generic_cobalt","pnh3surf", "pnh3surf", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","mld03", "mld03", "ocean_cobalt_sfc","all","mean","none",2 -# "ocean_model", "h_ML", "h_ML", "ocean_cobalt_sfc","all","mean","none",2 -# "ocean_model", "ePBL_h_ML", "ePBL_h_ML", "ocean_cobalt_sfc","all","mean","none",2 -# "ocean_model", "mlotst", "mlotst", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt_z","irr_mem_sfc", "irr_mem_sfc", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt","sfc_no3", "sfc_no3", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_po4", "sfc_po4", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_sio4", "sfc_sio4", "ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_co3_sol_arag", "sfc_co3_sol_arag","ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_co3_sol_calc", "sfc_co3_sol_calc","ocean_cobalt_sfc","all","mean","none",2 - "generic_cobalt","sfc_co3_ion", "sfc_co3_ion", "ocean_cobalt_sfc","all","mean","none",2 -#=================== -# Generic COBALT bottom fields: -#================== - "generic_cobalt","btm_temp", "btm_temp", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","btm_o2", "btm_o2", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","ffedet_btm", "ffedet_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","ffedi_btm", "ffedi_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","ffetot_btm", "ffetot_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","ffemd_btm", "ffemd_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","ffelg_btm", "ffelg_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","ffe_sed", "ffe_sed", "ocean_cobalt_btm","all","mean","none",2 -# "generic_cobalt","ffe_geotherm", "ffe_geotherm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","flithdet_btm", "flithdet_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fndet_btm", "fndet_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fndi_btm", "fndi_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fntot_btm", "fntot_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fnmd_btm", "fnmd_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fnlg_btm", "fnlg_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fpdet_btm", "fpdet_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fpdi_btm", "fpdi_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fptot_btm", "fptot_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fpmd_btm", "fpmd_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fplg_btm", "fplg_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fsidet_btm", "fsidet_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fsimd_btm", "fsimd_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fsilg_btm", "fsilg_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fcadet_arag_btm", "fcadet_arag_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fcadet_calc_btm", "fcadet_calc_btm", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fcased_burial", "fcased_burial", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fcased_redis", "fcased_redis", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fnfeso4red_sed", "fnfeso4red_sed", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fno3denit_sed", "fno3denit_sed", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fnoxic_sed", "fnoxic_sed", "ocean_cobalt_btm","all","mean","none",2 -# "generic_cobalt","fndet_burial", "fndet_burial", "ocean_cobalt_btm","all","mean","none",2 -# "generic_cobalt","fpdet_burial", "fpdet_burial", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","cased_2d", "cased", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","btm_co3_sol_arag", "btm_co3_sol_arag","ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","btm_co3_sol_calc", "btm_co3_sol_calc","ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","btm_co3_ion", "btm_co3_ion", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","btm_htotal", "btm_htotal", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","fcased_redis_surfresp","fcased_redis_surfresp","ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","cased_redis_coef", "cased_redis_coef", "ocean_cobalt_btm","all","mean","none",2 - "generic_cobalt","cased_redis_delz", "cased_redis_delz", "ocean_cobalt_btm","all","mean","none",2 -#====================== -# Generic COBALT downward fluxes at 100 meters -#====================== - "generic_cobalt","fndet_100", "fndet_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","fntot_100", "fntot_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","fpdet_100", "fpdet_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","fptot_100", "fptot_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","ffedet_100", "ffedet_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","fsidet_100", "fsidet_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","fcadet_calc_100", "fcadet_calc_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","fcadet_arag_100", "fcadet_arag_100", "ocean_cobalt_fdet_100","all","mean","none",2 - "generic_cobalt","flithdet_100", "flithdet_100", "ocean_cobalt_fdet_100","all","mean","none",2 -#======================= -# Generic COBALT integrated tracer variables -#======================= - "generic_cobalt","nsmp_100", "nsmp_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","nmdp_100", "nmdp_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","nlgp_100", "nlgp_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","ndi_100", "ndi_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","silgp_100", "silgp_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","simdp_100", "simdp_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","nsmz_100", "nsmz_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","nmdz_100", "nmdz_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","nlgz_100", "nlgz_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","nbact_100", "nbact_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","don_100", "don_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","ndet_100", "ndet_100", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","mesozoo_200", "mesozoo_200", "ocean_cobalt_tracers_int","all","mean","none",2 - "generic_cobalt","dp_fac", "dp_fac", "ocean_cobalt_tracers_int","all","mean","none",2 -#======================= -# Generic COBALT instant tracer variables (for budgets) -#======================= - "generic_cobalt","wc_vert_int_c", "wc_vert_int_c", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_dic", "wc_vert_int_dic", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_doc", "wc_vert_int_doc", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_poc", "wc_vert_int_poc", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_n", "wc_vert_int_n", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_p", "wc_vert_int_p", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_fe", "wc_vert_int_fe", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_si", "wc_vert_int_si", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_o2", "wc_vert_int_o2", "ocean_cobalt_tracers_instant","all",".false.","none",2 - "generic_cobalt","wc_vert_int_alk", "wc_vert_int_alk", "ocean_cobalt_tracers_instant","all",".false.","none",2 -#======================= -# Generic COBALT integrated flux variables -#======================= - "generic_cobalt","jprod_nsmp_100", "jprod_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nmdp_100", "jprod_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nlgp_100", "jprod_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_ndi_100", "jprod_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nsmp_new_100", "jprod_nsmp_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nmdp_new_100", "jprod_nmdp_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nlgp_new_100", "jprod_nlgp_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_ndi_new_100", "jprod_ndi_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_ndi_n2_100", "jprod_ndi_n2_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nsmz_100", "jprod_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nmdz_100", "jprod_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nlgz_100", "jprod_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_nbact_100", "jprod_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_mesozoo_200", "jprod_mesozoo_200", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jzloss_nsmp_100", "jzloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jzloss_nmdp_100", "jzloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jzloss_nlgp_100", "jzloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jzloss_ndi_100", "jzloss_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jaggloss_nsmp_100", "jaggloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jaggloss_nmdp_100", "jaggloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jaggloss_nlgp_100", "jaggloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jvirloss_nsmp_100", "jvirloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jvirloss_nmdp_100", "jvirloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jvirloss_nlgp_100", "jvirloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jmortloss_nsmp_100", "jmortloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jmortloss_nmdp_100", "jmortloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jmortloss_nlgp_100", "jmortloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jmortloss_ndi_100", "jmortloss_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jexuloss_nsmp_100", "jexuloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jexuloss_nmdp_100", "jexuloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jexuloss_nlgp_100", "jexuloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jexuloss_ndi_100", "jexuloss_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jingest_n_nsmz_100", "jingest_n_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jingest_n_nmdz_100", "jingest_n_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jingest_n_nlgz_100", "jingest_n_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jingest_n_hp_100", "jingest_n_hp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jzloss_nsmz_100", "jzloss_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jzloss_nmdz_100", "jzloss_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jhploss_nmdz_100", "jhploss_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jhploss_nlgz_100", "jhploss_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_ndet_nmdz_100", "jprod_ndet_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_ndet_nlgz_100", "jprod_ndet_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_ndet_hp_100", "jprod_ndet_hp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_don_nsmz_100", "jprod_don_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_don_nmdz_100", "jprod_don_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jremin_n_nsmz_100", "jremin_n_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jremin_n_nmdz_100", "jremin_n_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jremin_n_nlgz_100", "jremin_n_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jremin_n_hp_100", "jremin_n_hp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","juptake_ldon_nbact_100", "juptake_ldon_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jvirloss_nbact_100", "jvirloss_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jzloss_nbact_100", "jzloss_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jremin_n_nbact_100", "jremin_n_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_lithdet_100", "jprod_lithdet_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_sidet_100", "jprod_sidet_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_cadet_calc_100", "jprod_cadet_calc_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt","jprod_cadet_arag_100", "jprod_cadet_arag_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","jremin_ndet_100", "jremin_ndet_100", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jdiss_sidet","wc_vert_int_jdiss_sidet", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jdiss_cadet","wc_vert_int_jdiss_cadet", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jo2resp", "wc_vert_int_jo2resp", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jprod_cadet","wc_vert_int_jprod_cadet", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jno3denit", "wc_vert_int_jno3denit", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jprod_no3nitrif","wc_vert_int_jprod_no3nitrif","ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_juptake_nh4","wc_vert_int_juptake_nh4", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_juptake_no3","wc_vert_int_juptake_no3", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_nfix", "wc_vert_int_nfix", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jprod_nh4", "wc_vert_int_jprod_nh4", "ocean_cobalt_fluxes_int","all","mean","none",2 - #"generic_cobalt ","wc_vert_int_jfe_iceberg","wc_vert_int_jfe_iceberg", "ocean_cobalt_fluxes_int","all","mean","none",2 - #"generic_cobalt ","wc_vert_int_jno3_iceberg","wc_vert_int_jno3_iceberg","ocean_cobalt_fluxes_int","all","mean","none",2 - #"generic_cobalt ","wc_vert_int_jpo4_iceberg","wc_vert_int_jpo4_iceberg","ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_jprod_n2amx", "wc_vert_int_jprod_n2amx", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_net_phyto_resp", "wc_vert_int_net_phyto_resp", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_npp", "wc_vert_int_npp", "ocean_cobalt_fluxes_int","all","mean","none",2 - "generic_cobalt ","wc_vert_int_chemoautopp", "wc_vert_int_chemoautopp", "ocean_cobalt_fluxes_int","all","mean","none",2 -#======================================= -# ocean_cobalt_tracers_month_z -#======================================= -"generic_cobalt_z","htotal", "htotal", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"ocean_model_z","volcello", "volcello", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","chl2sfcchl", "chl2sfcchl", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","jupswim_n_Smz", "jupswim_n_Smz", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","jupswim_n_Mdz", "jupswim_n_Mdz", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","jupswim_n_Lgz", "jupswim_n_Lgz", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","chl", "chl", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","no3", "no3", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","o2", "o2", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","o2", "o2min", "ocean_cobalt_tracers_month_z","all","min","none",2 - "generic_cobalt_z","o2", "o2max", "ocean_cobalt_tracers_month_z","all","max","none",2 -# "generic_cobalt_z","cadet_arag", "cadet_arag", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","cadet_calc", "cadet_calc", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","ldon", "ldon", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","ldop", "ldop", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","lith", "lith", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","lithdet", "lithdet", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","pdet", "pdet", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","srdon", "srdon", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","srdop", "srdop", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","sldon", "sldon", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","sldop", "sldop", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","sidet", "sidet", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","omega_arag", "omega_arag", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","omega_calc", "omega_calc", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","ndi", "ndi", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nlg", "nlg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nmd", "nmd", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nsm", "nsm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","pdi", "pdi", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","plg", "plg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","pmd", "pmd", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","psm", "psm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","q_p_2_n_Sm", "q_p_2_n_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","q_p_2_n_Md", "q_p_2_n_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","q_p_2_n_Lg", "q_p_2_n_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","q_p_2_n_Di", "q_p_2_n_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","silg", "silg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","simd", "simd", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","chl", "chl", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","chl_Lg", "chl_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","chl_Md", "chl_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","chl_Sm", "chl_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","chl_Di", "chl_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","mu_Lg", "mu_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","mu_Md", "mu_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","mu_Sm", "mu_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","mu_Di", "mu_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irrlim_Lg", "irrlim_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irrlim_Md", "irrlim_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irrlim_Sm", "irrlim_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irrlim_Di", "irrlim_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 - # agg_lim diags are not registered - #"generic_cobalt_z","agg_lim_Lg", "agg_lim_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","agg_lim_Md", "agg_lim_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","agg_lim_Sm", "agg_lim_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - #"generic_cobalt_z","agg_lim_Di", "agg_lim_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nbact", "nbact", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nsmz", "nsmz", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nmdz", "nmdz", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nlgz", "nlgz", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","po4", "po4", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","nh4", "nh4", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","fed", "fed", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","fedet", "fedet", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","ndet", "ndet", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","feprime", "feprime", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","kfe_eq_lig", "kfe_eq_lig", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","theta_Lg", "theta_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","theta_Md", "theta_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","theta_Sm", "theta_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","theta_Di", "theta_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irr_mix", "irr_mix", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irr_acclim", "irr_acclim", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irr_inst", "irr_inst", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","irr_mem", "irr_mem", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","vmove_Di", "vmove_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","vmove_Sm", "vmove_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","vmove_Md", "vmove_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 - "generic_cobalt_z","vmove_Lg", "vmove_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","chl2sfcchl", "chl2sfcchl", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","jupswim_n_Smz", "jupswim_n_Smz","ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","jupswim_n_Mdz", "jupswim_n_Mdz","ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","jupswim_n_Lgz", "jupswim_n_Lgz","ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","vmove_Smz", "vmove_Smz", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","vmove_Mdz", "vmove_Mdz", "ocean_cobalt_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","vmove_Lgz", "vmove_Lgz", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","dissic", "dissic", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","dissoc", "dissoc", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","talk", "talk", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","si", "si", "ocean_cobalt_tracers_month_z","all","mean","none",2 -"generic_cobalt_z","co3", "co3", "ocean_cobalt_tracers_month_z","all","mean","none",2 -#============================================================================================================================= -# CMIP6_OMIP_biogeochemistry DIAGNOSTICS JGJ 2017/12/04 -# To be used with GENERIC OCEAN COBALT -# Oyr, Omon and day are requested. -# Additionally, output _z versions of 3-D fields. -# added variables not in spreadsheet (but in OMIP BGC documentation paper) -# Based on Data Request Version_01.00.18 - omitted any fields not in this data request -## 2017/12/11 added volcello to 3-D fields -## 2018/07/13 Updated - removed geolon/geolat, geolon_c/geolat_c, removed redundant volcello -# reorganized and cleaned-up for production sumulations -# Match Data Request 01.00.27b1 -## 2018/07/19 Updated to add P limitation diagnostics, daily mesozoo_200, and remove limndiaz (redundant) -## 2018/08/21 added nh4os, removed fields from ocean_cobalt_omip_tracers_month_z (being saved annual and sfc, and will cut down on disk space) -#============================================================================================================================= -#output files (native horizontal and vertical). Will be remapped to 1x1 -# -"ocean_cobalt_omip_daily", 24, "hours", 1, "days", "time", -"ocean_cobalt_omip_sfc", 1, "months", 1, "days", "time", -"ocean_cobalt_omip_2d", 1, "months", 1, "days", "time", -#"ocean_cobalt_omip_2d_ann", 12, "months", 1, "days", "time", -# -#output files (native horizontal on _z). fields here will be remapped to 1x1_z -# -# "ocean_cobalt_omip_tracers_month_z", 1, "months", 1, "days", "time", -"ocean_cobalt_omip_tracers_year_z", 12, "months", 1, "days", "time", -"ocean_cobalt_omip_rates_year_z", 12, "months", 1, "days", "time", -# -#============================================================================================================================= -# ocean_cobalt_omip_daily -# should we serve publicly as daily ? priority 3 duplicated as monthly priority 2 -#============================================================================================================================= -"generic_cobalt","chlos", "chlos", "ocean_cobalt_omip_daily","all","mean","none",2 -"generic_cobalt","phycos", "phycos", "ocean_cobalt_omip_daily","all","mean","none",2 -# not requested by CMIP/OMIP -# "generic_cobalt","mesozoo_200", "mesozoo_200", "ocean_cobalt_omip_daily","all","mean","none",2 -# -#==================================================================================================================== -# Omon: 2-D Marine Biogeochemical Surface Tracer Fields: ocean_cobalt_omip_sfc -#==================================================================================================================== - "generic_cobalt","dissicos", "dissicos", "ocean_cobalt_omip_sfc","all","mean","none",2 -# pending -# "generic_cobalt","dissicnatos", "dissicnatos", "ocean_cobalt_omip_sfc","all","mean","none",2 -# "generic_cobalt","dissicabioos", "dissicabioos", "ocean_cobalt_omip_sfc","all","mean","none",2 -# "generic_cobalt","dissi14cabioos", "dissi14cabioos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","dissocos", "dissocos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phycos", "phycos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","zoocos", "zoocos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","baccos", "baccos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","detocos", "detocos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","calcos", "calcos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","aragos", "aragos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phydiatos", "phydiatos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phydiazos", "phydiazos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phypicoos", "phypicoos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phymiscos", "phymiscos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","zmicroos", "zmicroos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","zmesoos", "zmesoos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","talkos", "talkos", "ocean_cobalt_omip_sfc","all","mean","none",2 -# pending -# "generic_cobalt","talknatos", "talknatos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phos", "phos", "ocean_cobalt_omip_sfc","all","mean","none",2 -# pending -# "generic_cobalt","phnatos", "phnat", "ocean_cobalt_omip_sfc","all","mean","none",2 -# "generic_cobalt","phabioos", "phabio", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","o2os", "o2os", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","o2satos", "o2satos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","no3os", "no3os", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","nh4os", "nh4os", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","po4os", "po4os", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","dfeos", "dfeos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","sios", "sios", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","chlos", "chlos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","chldiatos", "chldiatos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","chldiazos", "chldiazos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","chlpicoos", "chlpicoos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","chlmiscos", "chlmiscos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","ponos", "ponos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","popos", "popos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","bfeos", "bfeos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","bsios", "bsios", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phynos", "phynos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phypos", "phypos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","phyfeos", "phyfeos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","physios", "physios", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","co3os", "co3os", "ocean_cobalt_omip_sfc","all","mean","none",2 -#pending -# "generic_cobalt","co3natos", "co3natos", "ocean_cobalt_omip_sfc","all","mean","none",2 -# "generic_cobalt","co3abioos", "co3abioos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","co3satcalcos", "co3satcalcos", "ocean_cobalt_omip_sfc","all","mean","none",2 - "generic_cobalt","co3sataragos", "co3sataragos", "ocean_cobalt_omip_sfc","all","mean","none",2 -# -#============================================================================================================================= -# Omon: Additional 2-D Marine Biogeochemical Fields (e.g. vertically integrated, 100m, etc) -#============================================================================================================================= - "generic_cobalt","limndiat", "limndiat", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limnpico", "limnpico", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limnmisc", "limnmisc", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limirrdiat", "limirrdiat", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limirrdiaz", "limirrdiaz", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limirrpico", "limirrpico", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limirrmisc", "limirrmisc", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limfediat", "limfediat", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limfediaz", "limfediaz", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limfepico", "limfepico", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limfemisc", "limfemisc", "ocean_cobalt_omip_2d","all","mean","none",2 -# NOTE: P limitation diagnostics not requested by CMIP - "generic_cobalt","limpdiat", "limpdiat", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limpdiaz", "limpdiaz", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limppico", "limppico", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","limpmisc", "limpmisc", "ocean_cobalt_omip_2d","all","mean","none",2 -# - "generic_cobalt","intpp", "intpp", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intppnitrate", "intppnitrate", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intppdiat", "intppdiat", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intppdiaz", "intppdiaz", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpppico", "intpppico", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intppmisc", "intppmisc", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpbn", "intpbn", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpbp", "intpbp", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpbfe", "intpbfe", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpbsi", "intpbsi", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpcalcite", "intpcalcite", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intparag", "intparag", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","epc100", "epc100", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","epn100", "epn100", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","epp100", "epp100", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","epfe100", "epfe100", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","epsi100", "epsi100", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","epcalc100", "epcalc100", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","eparag100", "eparag100", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intdic", "intdic", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intdoc", "intdoc", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpoc", "intpoc", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","spco2", "spco2", "ocean_cobalt_omip_2d","all","mean","none",2 -# pending -# "generic_cobalt","spco2nat", "spco2nat", "ocean_cobalt_omip_2d","all","mean","none",2 -# "generic_cobalt","spco2abio", "spco2abio", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","dpco2", "dpco2", "ocean_cobalt_omip_2d","all","mean","none",2 -# pending -# "generic_cobalt","dpco2nat", "dpco2nat", "ocean_cobalt_omip_2d","all","mean","none",2 -# "generic_cobalt","dpco2abio", "dpco2abio", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","dpo2", "dpo2", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","fgco2", "fgco2", "ocean_cobalt_omip_2d","all","mean","none",2 -# pending -# "generic_cobalt","fgco2nat", "fgco2nat", "ocean_cobalt_omip_2d","all","mean","none",2 -# "generic_cobalt","fgco2abio", "fgco2abio", "ocean_cobalt_omip_2d","all","mean","none",2 -# "generic_cobalt","fg14co2abio", "fg14co2abio", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","fgo2", "fgo2", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","icfriver", "icfriver", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","fric", "fric", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","ocfriver", "ocfriver", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","froc", "froc", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","intpn2", "intpn2", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","fsn", "fsn", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","frn", "frn", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","fsfe", "fsfe", "ocean_cobalt_omip_2d","all","mean","none",2 - "generic_cobalt","frfe", "frfe", "ocean_cobalt_omip_2d","all","mean","none",2 -# -#============================================================================================================================= -# Oyr: Additional 2-D Marine Biogeochemical Fields -# Will be postprocessed via ts/ann -#============================================================================================================================= -# "generic_cobalt","fgco2", "fgco2", "ocean_cobalt_omip_2d_ann","all","mean","none",2 -# pending -# "generic_cobalt","fgco2nat", "fgco2nat", "ocean_cobalt_omip_2d_ann","all","mean","none",2 -# "generic_cobalt","fgco2abio", "fgco2abio", "ocean_cobalt_omip_2d_ann","all","mean","none",2 -# "generic_cobalt","fg14co2abio", "fg14co2abio", "ocean_cobalt_omip_2d_ann","all","mean","none",2 -# -#============================================================================================================================= -# CMIP6_OMIP_biogeochemistry DIAGNOSTICS JGJ 2016/08/15 -# To be used with GENERIC OCEAN COBALT -# output _z versions of 3-D fields. -#============================================================================================================================= -# Omon: 3-D Marine Biogeochemical Tracer Fields: ocean_cobalt_omip_tracers_month_z -#============================================================================================================================= - #"ocean_model_z","volcello", "volcello", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# -# "generic_cobalt_z","dissic", "dissic", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# pending -# "generic_cobalt_z","dissicnat", "dissicnat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","dissicabio", "dissicabio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","dissi14cabio", "dissi14cabio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","dissoc", "dissoc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phyc", "phyc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","zooc", "zooc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# sufficient to save annually and at sfc for CMIP6 -# "generic_cobalt_z","bacc", "bacc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","detoc", "detoc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","calc", "calc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","arag", "arag", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phydiat", "phydiat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phydiaz", "phydiaz", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phypico", "phypico", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phymisc", "phymisc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","zmicro", "zmicro", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","zmeso", "zmeso", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","talk", "talk", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# pending -# "generic_cobalt_z","talknat", "talknat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","ph", "ph", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# pending -# "generic_cobalt_z","phnat", "phnat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phabio", "phabio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","o2_cmip", "o2", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","o2sat", "o2sat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","no3_cmip", "no3", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","nh4_cmip", "nh4", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","po4_cmip", "po4", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","dfe", "dfe", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","si", "si", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","chl_cmip", "chl", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# sufficient to save annually and at sfc for CMIP6 -# "generic_cobalt_z","chldiat", "chldiat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","chldiaz", "chldiaz", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","chlpico", "chlpico", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","chlmisc", "chlmisc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","pon", "pon", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# sufficient to save annually and at sfc for CMIP6 -# "generic_cobalt_z","pop", "pop", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","bfe", "bfe", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","bsi", "bsi", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phyn", "phyn", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phyp", "phyp", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","phyfe", "phyfe", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","physi", "physi", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","co3", "co3", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# pending -# "generic_cobalt_z","co3nat", "co3nat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","co3abio", "co3abio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","co3satcalc", "co3satcalc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","co3satarag", "co3satarag", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# -#============================================================================================================================= -# Additional Omon: 3-D Marine Biogeochemical Fields: ocean_cobalt_omip_tracers_month_z -#============================================================================================================================= -# "generic_cobalt_z","pp", "pp", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","graz", "graz", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# "generic_cobalt_z","expc", "expc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 -# -#============================================================================================================================= -# Oyr: 3-D Marine Biogeochemical Tracer Fields: ocean_cobalt_omip_tracers_year_z -#============================================================================================================================= -# "ocean_model_z","volcello", "volcello", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# -# "generic_cobalt_z","dissic", "dissic", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# pending -# "generic_cobalt_z","dissicnat", "dissicnat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","dissicabio", "dissicabio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","dissi14cabio", "dissi14cabio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","dissoc", "dissoc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phyc", "phyc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","zooc", "zooc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","bacc", "bacc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","detoc", "detoc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","calc", "calc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","arag", "arag", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phydiat", "phydiat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phydiaz", "phydiaz", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phypico", "phypico", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phymisc", "phymisc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","zmicro", "zmicro", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","zmeso", "zmeso", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","talk", "talk", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# pending -# "generic_cobalt_z","talknat", "talknat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","ph", "ph", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# pending -# "generic_cobalt_z","phnat", "phnat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phabio", "phabio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","o2_cmip", "o2", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","o2sat", "o2sat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","no3_cmip", "no3", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","nh4_cmip", "nh4", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","po4_cmip", "po4", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","dfe", "dfe", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","si", "si", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","chl_cmip", "chl", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","chldiat", "chldiat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","chldiaz", "chldiaz", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","chlpico", "chlpico", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","chlmisc", "chlmisc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","pon", "pon", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","pop", "pop", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","bfe", "bfe", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","bsi", "bsi", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phyn", "phyn", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phyp", "phyp", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","phyfe", "phyfe", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","physi", "physi", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","co3", "co3", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# pending -# "generic_cobalt_z","co3nat", "co3nat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","co3abio", "co3abio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","co3satcalc", "co3satcalc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# "generic_cobalt_z","co3satarag", "co3satarag", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 -# -#============================================================================================================================= -# Oyr: 3-D Marine Biogeochemical Rates of Production and Removal: ocean_cobalt_omip_rates_year_z -#============================================================================================================================= -# volcello is needed here of model will crash - "ocean_model_z","volcello", "volcello", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","pp", "pp", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","pnitrate", "pnitrate", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","pbfe", "pbfe", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","pbsi", "pbsi", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","pcalc", "pcalc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","parag", "parag", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","expc", "expc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","expn", "expn", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","expp", "expp", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","expfe", "expfe", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","expsi", "expsi", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","expcalc", "expcalc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","exparag", "exparag", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","remoc", "remoc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","dcalc", "dcalc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","darag", "darag", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","ppdiat", "ppdiat", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","ppdiaz", "ppdiaz", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","pppico", "pppico", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","ppmisc", "ppmisc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","bddtdic", "bddtdic", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","bddtdin", "bddtdin", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","bddtdip", "bddtdip", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","bddtdife", "bddtdife", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","bddtdisi", "bddtdisi", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","bddtalk", "bddtalk", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","fescav", "fescav", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","fediss", "fediss", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 - "generic_cobalt_z","graz", "graz", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 -# -# MOM6 ocean diagnostics files -"ocean_daily", 1, "days", 1, "days", "time" -"ocean_month_snap", 1, "months", 1, "days", "time" -"ocean_month", 1, "months", 1, "days", "time" -"ocean_month_z", 1, "months", 1, "days", "time" -"ocean_annual", 12, "months", 1, "days", "time" -"ocean_annual_z", 12, "months", 1, "days", "time" -"ocean_static", -1, "months", 1, "days", "time" # ocean_static is a protected name. Do not change this line. -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table G1: static information - "ocean_model", "areacello", "areacello", "ocean_static", "all", "none", "none", 2 - "ocean_model", "deptho", "deptho", "ocean_static", "all", "none", "none", 2 -#"ocean_model", "basin", "basin", "ocean_static", "all", "none", "none", 2 # in /archive/gold/datasets/OM4_025/ -# "ocean_model", "hfgeou", "hfgeou", "ocean_static", "all", "none", "none", 2 # for static geothermal heat - "ocean_model", "sftof", "sftof", "ocean_static", "all", "none", "none", 2 -# Extra static geometry data beyond CMIP6/OMIP Table 2.1 - "ocean_model", "Coriolis", "Coriolis", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolon", "geolon", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolat", "geolat", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolon_c", "geolon_c", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolat_c", "geolat_c", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolon_u", "geolon_u", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolat_u", "geolat_u", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolon_v", "geolon_v", "ocean_static", "all", "none", "none", 2 - "ocean_model", "geolat_v", "geolat_v", "ocean_static", "all", "none", "none", 2 - "ocean_model", "wet", "wet", "ocean_static", "all", "none", "none", 2 - "ocean_model", "wet_c", "wet_c", "ocean_static", "all", "none", "none", 2 - "ocean_model", "wet_u", "wet_u", "ocean_static", "all", "none", "none", 2 - "ocean_model", "wet_v", "wet_v", "ocean_static", "all", "none", "none", 2 - "ocean_model", "dxt", "dxt", "ocean_static", "all", "none", "none", 2 - "ocean_model", "dyt", "dyt", "ocean_static", "all", "none", "none", 2 - "ocean_model", "dxCu", "dxCu", "ocean_static", "all", "none", "none", 2 - "ocean_model", "dyCu", "dyCu", "ocean_static", "all", "none", "none", 2 - "ocean_model", "dxCv", "dxCv", "ocean_static", "all", "none", "none", 2 - "ocean_model", "dyCv", "dyCv", "ocean_static", "all", "none", "none", 2 - "ocean_model", "areacello_cu","areacello_cu","ocean_static", "all", "none", "none", 2 - "ocean_model", "areacello_cv","areacello_cv","ocean_static", "all", "none", "none", 2 - "ocean_model", "areacello_bu","areacello_bu","ocean_static", "all", "none", "none", 2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table H1: scalar fields such as tracers, cell mass/volume, sea level, MLD -# Generally save annuals, and sometimes monthly and daily. - "ocean_model_z", "volcello", "volcello", "ocean_annual_z", "all", "mean", "none",2 # Cell measure for 3d data - "ocean_model_z", "volcello", "volcello", "ocean_month_z", "all", "mean", "none",2 # Cell measure for 3d data - "ocean_model", "volcello", "volcello", "ocean_annual", "all", "mean", "none",2 # Cell measure for 3d data -# "ocean_model", "volcello", "volcello", "ocean_month", "all", "mean", "none",2 # Cell measure for 3d data - "ocean_model", "pbo", "pbo", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "pbo", "pbo", "ocean_month", "all", "mean", "none",2 -# "ocean_model", "pso", "pso", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "pso", "pso", "ocean_month", "all", "mean", "none",2 - "ocean_model", "masscello", "masscello", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "masscello", "masscello", "ocean_month", "all", "mean", "none",2 - "ocean_model", "thkcello", "thkcello", "ocean_annual", "all", "mean", "none",2 # Only needed in native space a static field needs to be provided for CMIP6 -#"ocean_model", "thkcello", "thkcello", "ocean_month", "all", "mean", "none",2 - "ocean_model", "ssh", "ssh", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "zos", "zos", "ocean_month", "all", "mean", "none",2 - "ocean_model", "ssh", "ssh", "ocean_month", "all", "mean", "none",2 -# "ocean_model", "zos", "zos", "ocean_daily", "all", "mean", "none",2 - "ocean_model", "ssh", "ssh", "ocean_daily", "all", "mean", "none",2 -# "ocean_model", "zos", "zosmin", "ocean_daily", "all", "min", "none",2 -# "ocean_model", "zos", "zosmax", "ocean_daily", "all", "max", "none",2 - "ocean_model", "ssh", "sshmin", "ocean_daily", "all", "min", "none",2 - "ocean_model", "ssh", "sshmax", "ocean_daily", "all", "max", "none",2 - "ocean_model", "zossq", "zossq", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "zossq", "zossq", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "zostoga", "zostoga", "ocean_month", "all", "mean", "none",2 # to be done offline - "ocean_model", "thetao", "thetao", "ocean_annual", "all", "mean", "none",2 # if use pre-TEOS10 -#"ocean_model", "thetao", "thetao", "ocean_month", "all", "mean", "none",2 # if use pre-TEOS10 - "ocean_model_z", "thetao", "thetao", "ocean_annual_z", "all", "mean", "none",2 # if use pre-TEOS10 - "ocean_model_z", "thetao", "thetao", "ocean_month_z", "all", "mean", "none",2 # if use pre-TEOS10 - "ocean_model_z", "thetao_xyave", "thetao_xyave", "ocean_annual_z", "all", "mean", "none",2 # if use pre-TEOS10 -#"ocean_model", "bigthetao", "bigthetao", "ocean_annual", "all", "mean", "none",2 # if use TEOS10 -#"ocean_model", "bigthetao", "bigthetao", "ocean_month", "all", "mean", "none",2 # if use TEOS10 - "ocean_model", "tos", "tos", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "tos", "tos", "ocean_month", "all", "mean", "none",2 - "ocean_model", "tos", "tos", "ocean_daily", "all", "mean", "none",2 - "ocean_model", "tos", "tosmin", "ocean_daily", "all", "min" , "none",2 - "ocean_model", "tos", "tosmax", "ocean_daily", "all", "max" , "none",2 - "ocean_model", "tossq", "tossq", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "tossq", "tossq", "ocean_month", "all", "mean", "none",2 - "ocean_model", "tossq", "tossq", "ocean_daily", "all", "mean", "none",2 - "ocean_model", "tob", "tob", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "tob", "tob", "ocean_month", "all", "mean", "none",2 - "ocean_model", "tob", "tob", "ocean_daily", "all", "mean", "none",2 - "ocean_model", "so", "so", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "so", "so", "ocean_month", "all", "mean", "none",2 - "ocean_model_z", "so", "so", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "so", "so", "ocean_month_z", "all", "mean", "none",2 - "ocean_model_z", "so_xyave", "so_xyave", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model", "sos", "sos", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "sos", "sos", "ocean_month", "all", "mean", "none",2 - "ocean_model", "sos", "sos", "ocean_daily", "all", "mean", "none",2 - "ocean_model", "sossq", "sossq", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "sossq", "sossq", "ocean_month", "all", "mean", "none",2 - "ocean_model", "sossq", "sossq", "ocean_daily", "all", "mean", "none",2 - "ocean_model", "sob", "sob", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "sob", "sob", "ocean_month", "all", "mean", "none",2 - "ocean_model", "sob", "sob", "ocean_daily", "all", "mean", "none",2 - # not registered - #"ocean_model_z", "obvfsq", "obvfsq", "ocean_annual_z", "all", "mean", "none",2 - #"ocean_model_z", "obvfsq", "obvfsq", "ocean_month_z", "all", "mean", "none",2 -# "ocean_model", "mlotst", "mlotst", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "mlotst", "mlotst", "ocean_month", "all", "mean", "none",2 -# "ocean_model", "mlotstsq", "mlotstsq", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "mlotstsq", "mlotstsq", "ocean_month", "all", "mean", "none",2 - "ocean_model", "mlotst", "mlotstmin", "ocean_annual", "all", "min", "none",2 - "ocean_model", "mlotst", "mlotstmin", "ocean_month", "all", "min", "none",2 - "ocean_model", "mlotst", "mlotstmax", "ocean_annual", "all", "max", "none",2 - "ocean_model", "mlotst", "mlotstmax", "ocean_month", "all", "max", "none",2 -#"ocean_model", "msftbarot", "msftbarot", "ocean_month", "all", "mean", "none",2 # to be done offline -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table I1: components of vector fields -# (umo,vmo) =net mass transport from residual mean velocity (model resolved + SGS) -# (uhml,vhml)=parameterized mixed layer restratification mass transport -# (uhGM,vhGM)=parameterized eddy-induced mass transport from GM -# (T_adx_2d,T_ady_2d) = heat transport by residual mean advection (yet to code neutral diffusion diagnostic) -# Offline calculations needed for meridional overturning streamfunctions. -#"ocean_model", "uo", "uo", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","uo", "uo", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","uo", "uo", "ocean_month_z", "all", "mean", "none",2 -#"ocean_model", "uo", "uo", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "vo", "vo", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","vo", "vo", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","vo", "vo", "ocean_month_z", "all", "mean", "none",2 -#"ocean_model", "vo", "vo", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "umo", "umo", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","umo", "umo", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","umo", "umo", "ocean_month_z", "all", "mean", "none",2 -#"ocean_model", "vmo", "vmo", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","vmo", "vmo", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","vmo", "vmo", "ocean_month_z", "all", "mean", "none",2 -#"ocean_model", "wmo", "wmo", "ocean_annual", "all", "mean", "none",2 # calculated offline -#"ocean_model", "wmo", "wmo", "ocean_month", "all", "mean", "none",2 # calculated offline -#"ocean_model", "uhml", "uhml", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","uhml", "uhml", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","uhml", "uhml", "ocean_month_z", "all", "mean", "none",2 -#"ocean_model", "vhml", "vhml", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","vhml", "vhml", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","vhml", "vhml", "ocean_month_z", "all", "mean", "none",2 -#"ocean_model", "uhGM", "uhGM", "ocean_annual", "all", "mean", "none",2 -#"ocean_model_z","uhGM", "uhGM", "ocean_annual_z", "all", "mean", "none",2 -#"ocean_model_z","uhGM", "uhGM", "ocean_month_z", "all", "mean", "none",2 -#"ocean_model", "vhGM", "vhGM", "ocean_annual", "all", "mean", "none",2 -#"ocean_model_z","vhGM", "vhGM", "ocean_annual_z", "all", "mean", "none",2 -#"ocean_model_z","vhGM", "vhGM", "ocean_month_z", "all", "mean", "none",2 - "ocean_model_z","uh", "uh", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","vh", "vh", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","T_adx", "T_adx", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","T_ady", "T_ady", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model", "T_adx_2d", "T_adx_2d", "ocean_month", "all", "mean", "none",2 - "ocean_model", "T_ady_2d", "T_ady_2d", "ocean_month", "all", "mean", "none",2 - "ocean_model", "T_adx_2d", "T_adx_2d", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "T_ady_2d", "T_ady_2d", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","S_adx", "S_adx", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","S_ady", "S_ady", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model", "S_adx_2d", "S_adx_2d", "ocean_month", "all", "mean", "none",2 - "ocean_model", "S_ady_2d", "S_ady_2d", "ocean_month", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table J1: in support of mass transport through straits -# net transport of mass through straits is either done offline using -# umo_2d and vmo_2d or via the Sections output just below. - "ocean_model", "umo_2d", "umo_2d", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "vmo_2d", "vmo_2d", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "umo_2d", "umo_2d", "ocean_month", "all", "mean", "none",2 - "ocean_model", "vmo_2d", "vmo_2d", "ocean_month", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table K1: surface mass fluxes - "ocean_model", "prlq", "prlq", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "prsn", "prsn", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "evs", "evs", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "friver", "friver", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "ficeberg", "ficeberg", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "fsitherm", "fsitherm", "ocean_annual", "all", "mean", "none",2 # need code to split ice melt from prlq - "ocean_model", "wfo", "wfo", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "prlq", "prlq", "ocean_month", "all", "mean", "none",2 # MOM6 has ice melt/form added to prlq - "ocean_model", "prsn", "prsn", "ocean_month", "all", "mean", "none",2 - "ocean_model", "evs", "evs", "ocean_month", "all", "mean", "none",2 - "ocean_model", "friver", "friver", "ocean_month", "all", "mean", "none",2 - "ocean_model", "ficeberg", "ficeberg", "ocean_month", "all", "mean", "none",2 - "ocean_model", "fsitherm", "fsitherm", "ocean_month", "all", "mean", "none",2 # need code to split ice melt from prlq - "ocean_model", "wfo", "wfo", "ocean_month", "all", "mean", "none",2 -# extra mass flux information beyond CMIP6/OMIP Table K1 - "ocean_model", "net_massout", "net_massout", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "net_massin", "net_massin", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "net_massout", "net_massout", "ocean_month", "all", "mean", "none",2 - "ocean_model", "net_massin", "net_massin", "ocean_month", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table K2: surface salt fluxes - "ocean_model", "sfdsi", "sfdsi", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "sfriver", "sfriver", "ocean_annual", "all", "mean", "none",2 # to be coded if rivers have salt - "ocean_model", "sfdsi", "sfdsi", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "sfriver", "sfriver", "ocean_month", "all", "mean", "none",2 # to be coded if rivers have salt -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table K3: boundary heat fluxes -# "ocean_model", "hfgeou", "hfgeou", "ocean_annual", "all", "mean", "none",2 # geothermal heat flux is static - "ocean_model", "hfrainds", "hfrainds", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "hfevapds", "hfevapds", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "hfrunoffds", "hfrunoffds", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "hfsnthermds", "hfsnthermds", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "hfsifrazil", "hfsifrazil", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "hfibthermds", "hfibthermds", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "hfsolidrunoffds", "hfsolidrunoffds", "ocean_annual", "all", "mean", "none",2 # =0 if ice = 0C # not registered - "ocean_model", "rlntds", "rlntds", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "hflso", "hflso", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "hfsso", "hfsso", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "rsntds", "rsntds", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "rsdo", "rsdo", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "hfds", "hfds", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "hfgeou", "hfgeou", "ocean_month", "all", "mean", "none",2 # geothermal heat flux is static - "ocean_model", "hfrainds", "hfrainds", "ocean_month", "all", "mean", "none",2 # heat content of lprec fprec condensate - "ocean_model", "hfevapds", "hfevapds", "ocean_month", "all", "mean", "none",2 # heat content of mass leaving ocean - "ocean_model", "hfrunoffds", "hfrunoffds", "ocean_month", "all", "mean", "none",2 # heat content of lrunoff frunoff - "ocean_model", "hfsnthermds", "hfsnthermds", "ocean_month", "all", "mean", "none",2 # latent heat to melt snow - "ocean_model", "hfsifrazil", "hfsifrazil", "ocean_month", "all", "mean", "none",2 # frazil formation -#"ocean_model", "hfsithermds", "hfsithermds", "ocean_month", "all", "mean", "none",2 # computed in SIS2 - "ocean_model", "hfibthermds", "hfibthermds", "ocean_month", "all", "mean", "none",2 # latent heat to melt icebergs -# "ocean_model", "hfsolidrunoffds", "hfsolidrunoffds", "ocean_month", "all", "mean", "none",2 # ne 0 since ice has SST - "ocean_model", "rlntds", "rlntds", "ocean_month", "all", "mean", "none",2 # longwave down - "ocean_model", "hflso", "hflso", "ocean_month", "all", "mean", "none",2 # latent heat for evap+melt - "ocean_model", "hfsso", "hfsso", "ocean_month", "all", "mean", "none",2 # sensible from air-sea and ice-sea - "ocean_model", "rsntds", "rsntds", "ocean_month", "all", "mean", "none",2 # shortwave - "ocean_model", "hfds", "hfds", "ocean_month", "all", "mean", "none",2 # total heat entering ocean surface - "ocean_model", "rsdo", "rsdo", "ocean_month_z", "all", "mean", "none",2 # penetrative shortwave flux at interface -# Extra heat flux terms beyond Table K3 from CMIP6/OMIP - "ocean_model", "net_heat_coupler", "net_heat_coupler", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "heat_content_massin", "heat_content_massin", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "heat_content_massout", "heat_content_massout", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "heat_content_surfwater", "heat_content_surfwater", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "heat_content_fprec", "heat_content_fprec", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "heat_content_cond", "heat_content_cond", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "LwLatSens", "LwLatSens", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "Heat_PmE", "Heat_PmE", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "nonpenSW", "nonpenSW", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "internal_heat", "internal_heat", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "net_heat_coupler", "net_heat_coupler", "ocean_month", "all", "mean", "none",2 - "ocean_model", "heat_content_massin", "heat_content_massin", "ocean_month", "all", "mean", "none",2 - "ocean_model", "heat_content_massout", "heat_content_massout", "ocean_month", "all", "mean", "none",2 - "ocean_model", "heat_content_surfwater", "heat_content_surfwater", "ocean_month", "all", "mean", "none",2 - "ocean_model", "heat_content_fprec", "heat_content_fprec", "ocean_month", "all", "mean", "none",2 - "ocean_model", "heat_content_cond", "heat_content_cond", "ocean_month", "all", "mean", "none",2 - "ocean_model", "LwLatSens", "LwLatSens", "ocean_month", "all", "mean", "none",2 - "ocean_model", "Heat_PmE", "Heat_PmE", "ocean_month", "all", "mean", "none",2 -# "ocean_model", "nonpenSW", "nonpenSW", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "internal_heat", "internal_heat", "ocean_month", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table K4: boundary momentum fluxes - "ocean_model", "tauuo", "tauuo", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "tauvo", "tauvo", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "tauuo", "tauuo", "ocean_month", "all", "mean", "none",2 - "ocean_model", "tauvo", "tauvo", "ocean_month", "all", "mean", "none",2 -# extra mechanical forcing beyond CMIP6/OMIP Table K4 - "ocean_model", "ustar", "ustar", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "ustar", "ustar", "ocean_month", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP/BGC : this table should be computed in generic tracer code -#"ocean_model", "fgcfc11", "fgcfc11", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "fgcfc12", "fgcfc12", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "fgsf6", "fgsf6", "ocean_month", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table L1: table of heat and salt tendencies - "ocean_model", "opottempmint", "opottempmint", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "ocontempmint", "ocontempmint", "ocean_annual", "all", "mean", "none",2 # to be coded if use TEOS10 - "ocean_model", "somint", "somint", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z", "rsdoabsorb", "rsdoabsorb", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "opottemptend", "opottemptend", "ocean_annual_z", "all", "mean", "none",2 -#"ocean_model_z", "opottemprmadvect", "opottemprmadvect", "ocean_annual_z", "all", "mean", "none",2 # T_advection_xy+Th_tendency_vert_remap -# "ocean_model", "opottemppmdiff", "opottemppmdiff", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z", "opottempdiff", "opottempdiff", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "osalttend", "osalttend", "ocean_annual_z", "all", "mean", "none",2 -#"ocean_model_z", "osaltrmadvect", "osaltrmadvect", "ocean_annual_z", "all", "mean", "none",2 # S_advection_xy+Sh_tendency_vert_remap - "ocean_model_z", "osaltpmdiff", "osaltpmdiff", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "osaltdiff", "osaltdiff", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "frazil_heat_tendency", "frazil_heat_tendency", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "T_advection_xy", "T_advection_xy", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "S_advection_xy", "S_advection_xy", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "Th_tendency_vert_remap", "Th_tendency_vert_remap", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "Sh_tendency_vert_remap", "Sh_tendency_vert_remap", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","boundary_forcing_heat_tendency", "boundary_forcing_heat_tendency", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","boundary_forcing_salt_tendency", "boundary_forcing_salt_tendency", "ocean_annual_z", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table M1: vertical tracer diffusivities and potential energy dissipation -"ocean_model_z", "difvho", "difvho", "ocean_annual_z", "all", "mean", "none",2 -"ocean_model_z", "difvso", "difvso", "ocean_annual_z", "all", "mean", "none",2 -#"ocean_model", "tnpeo", "tnpeo", "ocean_annual", "all", "mean", "none",2 # code needed -# ----------------------------------------------------------------------------------------- -# CMIP6/OMIP Table N1: lateral viscosity and diffusivities and impact on kinetic energy -#"ocean_model", "diftrblo", "diftrblo", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "diftrelo", "diftrelo", "ocean_annual", "all", "mean", "none",2 # when neutral tracer diffusion - "ocean_model", "difmxylo", "difmxylo", "ocean_annual", "all", "mean", "none",2 # save if use Laplacian visc - "ocean_model", "difmxybo", "difmxybo", "ocean_annual", "all", "mean", "none",2 - #"ocean_model", "dispkexyfo", "dispkexyfo", "ocean_annual", "all", "mean", "none",2 # not registered -#"ocean_model", "tnkebto", "tnkebto", "ocean_annual", "all", "mean", "none",2 - "ocean_model_z","difmxybo", "difmxybo", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z","dispkexyfo", "dispkexyfo", "ocean_annual_z", "all", "mean", "none",2 -############################################################################################# -###### Diagnostics in addition to CMIP6/OMIP request######################################### -# ----------------------------------------------------------------------------------------- -# High-frequency - "ocean_model", "SSU", "ssu", "ocean_daily", "all", "mean", "none",2 - "ocean_model", "SSV", "ssv", "ocean_daily", "all", "mean", "none",2 -#"ocean_model", "tos", "tos_max", "ocean_daily", "all", "max", "none",2 -#"ocean_model", "tos", "tos_min", "ocean_daily", "all", "min", "none",2 - "ocean_model", "ePBL_h_ML", "omldamax", "ocean_daily", "all", "max", "none",2 -# ----------------------------------------------------------------------------------------- -# various fields - "ocean_model", "e", "e", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "e", "e", "ocean_month", "all", "mean", "none",2 - "ocean_model", "speed", "speed", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "speed", "speed", "ocean_month", "all", "mean", "none",2 - "ocean_model", "KE", "KE", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "KE", "KE", "ocean_month", "all", "mean", "none",2 - "ocean_model", "mass_wt", "mass_wt", "ocean_annual", "all", "mean", "none",2 -"ocean_model_z", "Kd_interface", "Kd_interface", "ocean_annual_z", "all", "mean", "none",2 -"ocean_model_z", "Kd_shear", "Kd_shear", "ocean_annual_z", "all", "mean", "none",2 -"ocean_model_z", "Kd_itides", "Kd_itides", "ocean_annual_z", "all", "mean", "none",2 -"ocean_model_z", "Kd_BBL", "Kd_BBL", "ocean_annual_z", "all", "mean", "none",2 -"ocean_model_z", "Kd_ePBL", "Kd_ePBL", "ocean_annual_z", "all", "mean", "none",2 -"ocean_model_z", "Kd_heat", "Kd_heat", "ocean_annual_z", "all", "mean", "none",2 -"ocean_model_z", "Kd_salt", "Kd_salt", "ocean_annual_z", "all", "mean", "none",2 -# "ocean_model", "TKE_tidal", "TKE_tidal", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "TKE_itidal", "TKE_itidal", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "MLD_003", "MLD_003", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "MLD_003", "MLD_003", "ocean_month", "all", "mean", "none",2 - "ocean_model", "MLD_003", "MLD_003_min", "ocean_annual", "all", "min", "none",2 - "ocean_model", "MLD_003", "MLD_003_max", "ocean_annual", "all", "max", "none",2 - "ocean_model", "MLD_restrat", "MLD_restrat", "ocean_month", "all", "mean", "none",2 - "ocean_model", "udml_restrat", "udml_restrat", "ocean_month", "all", "mean", "none",2 - "ocean_model", "vdml_restrat", "vdml_restrat", "ocean_month", "all", "mean", "none",2 - "ocean_model", "uml_restrat", "uml_restrat", "ocean_month", "all", "mean", "none",2 - "ocean_model", "vml_restrat", "vml_restrat", "ocean_month", "all", "mean", "none",2 - "ocean_model", "MLD_EN1", "MLD_EN1", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "MLD_EN1", "MLD_EN1", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "MSTAR_LT", "MSTAR_LT", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "MSTAR", "MSTAR", "ocean_annual", "all", "mean", "none",2 -#"ocean_model", "MSTAR_LT", "MSTAR_LT", "ocean_month", "all", "mean", "none",2 - "ocean_model", "MSTAR", "MSTAR", "ocean_month", "all", "mean", "none",2 -#"ocean_model", "vintage", "vintage", "ocean_annual", "all", "mean", "none",2 -# MEKE not used -# "ocean_model", "MEKE_Ue", "MEKE_Ue", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "MEKE_Le", "MEKE_Le", "ocean_annual", "all", "mean", "none",2 -# "ocean_model", "MEKE_KH", "MEKE_KH", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "subML_N2", "subML_N2", "ocean_annual", "all", "mean", "none",2 - "ocean_model", "tos", "tos_max", "ocean_annual", "all", "max", "none",2 - "ocean_model", "tos", "tos_min", "ocean_annual", "all", "min", "none",2 - "ocean_model_z", "rhopot0", "rhopot0", "ocean_month_z", "all", "mean", "none",2 - "ocean_model_z", "rhopot0", "rhopot0", "ocean_annual_z", "all", "mean", "none",2 - "ocean_model_z", "rhoinsitu", "rhoinsitu", "ocean_month_z", "all", "mean", "none",2 - "ocean_model_z", "rhoinsitu", "rhoinsitu", "ocean_annual_z", "all", "mean", "none",2 -# ----------------------------------------------------------------------------------------- -# Monthly snapshots - "ocean_model", "mass_wt", "mass_wt", "ocean_month_snap", "all", "none", "none",2 - "ocean_model", "opottempmint","opottempmint","ocean_month_snap", "all", "none", "none",2 - "ocean_model", "somint", "somint", "ocean_month_snap", "all", "none", "none",2 -# ----------------------------------------------------------------------------------------- -# tracer concentration time tendencies due to various processes -# vertical diffusion tendencies for T and S -"ocean_model","diabatic_diff_temp_tendency","diabatic_diff_temp_tendency","ocean_annual","all","mean","none",2 -"ocean_model","diabatic_diff_saln_tendency","diabatic_diff_saln_tendency","ocean_annual","all","mean","none",2 -# neutral diffusion tendencies for T and S -#"ocean_model","ndiff_tracer_conc_tendency_T","ndiff_tracer_conc_tendency_T" ,"ocean_annual","all","mean","none",2 -#"ocean_model","ndiff_tracer_conc_tendency_S","ndiff_tracer_conc_tendency_S" ,"ocean_annual","all","mean","none",2 -# "ocean_model","opottemppmdiff_2d" ,"opottemppmdiff_2d" ,"ocean_annual","all","mean","none",2 -# "ocean_model","osaltpmdiff_2d" ,"osaltpmdiff_2d" ,"ocean_annual","all","mean","none",2 -# net tendencies and lateral advection tendencies for T and S - "ocean_model", "T_tendency", "T_tendency", "ocean_annual","all","mean","none",2 - "ocean_model", "S_tendency", "S_tendency", "ocean_annual","all","mean","none",2 - "ocean_model", "opottemptend_2d", "opottemptend_2d", "ocean_annual","all","mean","none",2 - "ocean_model", "osalttend_2d", "osalttend_2d", "ocean_annual","all","mean","none",2 - "ocean_model", "T_advection_xy_2d", "T_advection_xy_2d", "ocean_annual","all","mean","none",2 - "ocean_model", "S_advection_xy_2d", "S_advection_xy_2d", "ocean_annual","all","mean","none",2 -# tendencies from vertical remapping for T and S -"ocean_model","T_tendency_vert_remap", "T_tendency_vert_remap", "ocean_annual","all","mean","none",2 -"ocean_model","S_tendency_vert_remap", "S_tendency_vert_remap", "ocean_annual","all","mean","none",2 -"ocean_model","Th_tendency_vert_remap_2d", "Th_tendency_vert_remap_2d", "ocean_annual","all","mean","none",2 -"ocean_model","Sh_tendency_vert_remap_2d", "Sh_tendency_vert_remap_2d", "ocean_annual","all","mean","none",2 -# tendencies from boundary terms which have a 3d contribution -"ocean_model","frazil_heat_tendency_2d" ,"frazil_heat_tendency_2d", "ocean_annual","all","mean","none",2 -"ocean_model","boundary_forcing_heat_tendency_2d" ,"boundary_forcing_heat_tendency_2d","ocean_annual","all","mean","none",2 -"ocean_model","boundary_forcing_salt_tendency_2d" ,"boundary_forcing_salt_tendency_2d","ocean_annual","all","mean","none",2 -## output files -"ice_daily", 1, "days", 1, "days", "time" -"ice_month", 1, "months", 1, "days", "time" -"ice_static", -1, "months", 1, "days", "time" -#================ -# ICE DIAGNOSTICS -#================ - "ice_model", "CELL_AREA", "CELL_AREA", "ice_static", "all", "none", "none", 2 - "ice_model", "COSROT", "COSROT", "ice_static", "all", "none", "none", 2 - "ice_model", "GEOLAT", "GEOLAT", "ice_static", "all", "none", "none", 2 - "ice_model", "GEOLON", "GEOLON", "ice_static", "all", "none", "none", 2 - "ice_model", "SINROT", "SINROT", "ice_static", "all", "none", "none", 2 -# Daily sea-ice -#"ice_model", "SST", "SST", "ice_daily", "all", "mean", "none", 2 -# "ice_model", "SSH", "SSH", "ice_daily", "all", "mean", "none", 2 -# "ice_model", "SSS", "SSS", "ice_daily", "all", "mean", "none", 2 - "ice_model", "EXT", "EXT", "ice_daily", "all", "mean", "none", 2 -# Monthly sea-ice -# "ice_model", "CELL_AREA", "CELL_AREA", "ice_month", "all", "none", "none", 2 -# "ice_model", "COSROT", "COSROT", "ice_month", "all", "none", "none", 2 -# "ice_model", "GEOLAT", "GEOLAT", "ice_month", "all", "none", "none", 2 -# "ice_model", "GEOLON", "GEOLON", "ice_month", "all", "none", "none", 2 -# "ice_model", "SINROT", "SINROT", "ice_month", "all", "none", "none", 2 -#"ice_model", "AGE", "AGE", "ice_month", "all", "mean", "none", 2 - "ice_model", "ALB", "ALB", "ice_month", "all", "mean", "none", 2 - "ice_model", "BHEAT", "BHEAT", "ice_month", "all", "mean", "none", 2 - "ice_model", "BMELT", "BMELT", "ice_month", "all", "mean", "none", 2 - "ice_model", "BSNK", "BSNK", "ice_month", "all", "mean", "none", 2 - "ice_model", "CALVING", "CALVING", "ice_month", "all", "mean", "none", 2 - "ice_model", "CALVING_HFLX","CALVING_HFLX","ice_month", "all", "mean", "none", 2 - "ice_model", "CN", "CN", "ice_month", "all", "mean", "none", 2 - "ice_model", "E2MELT", "E2MELT", "ice_month", "all", "mean", "none", 2 -# "ice_model", "EVAP", "EVAP", "ice_month", "all", "mean", "none", 2 - "ice_model", "EXT", "EXT", "ice_month", "all", "mean", "none", 2 - "ice_model", "EXT", "EXT_MIN", "ice_month", "all", "min", "none", 2 - "ice_model", "EXT", "EXT_MAX", "ice_month", "all", "max", "none", 2 - "ice_model", "FA_X", "FA_X", "ice_month", "all", "mean", "none", 2 - "ice_model", "FA_Y", "FA_Y", "ice_month", "all", "mean", "none", 2 -#"ice_model", "FC_X", "FC_X", "ice_month", "all", "mean", "none", 2 -#"ice_model", "FC_Y", "FC_Y", "ice_month", "all", "mean", "none", 2 - "ice_model", "FI_X", "FI_X", "ice_month", "all", "mean", "none", 2 - "ice_model", "FI_Y", "FI_Y", "ice_month", "all", "mean", "none", 2 -#"ice_model", "FW_X", "FW_X", "ice_month", "all", "mean", "none", 2 -#"ice_model", "FW_Y", "FW_Y", "ice_month", "all", "mean", "none", 2 - "ice_model", "FRAZIL", "FRAZIL", "ice_month", "all", "mean", "none", 2 -#"ice_model", "HI_PART", "HI_PART", "ice_month", "all", "mean", "none", 2 - "ice_model", "IX_TRANS", "IX_TRANS", "ice_month", "all", "mean", "none", 2 - "ice_model", "IY_TRANS", "IY_TRANS", "ice_month", "all", "mean", "none", 2 -# "ice_model", "LH", "LH", "ice_month", "all", "mean", "none", 2 - "ice_model", "LSNK", "LSNK", "ice_month", "all", "mean", "none", 2 - "ice_model", "LSRC", "LSRC", "ice_month", "all", "mean", "none", 2 -# "ice_model", "LW", "LW", "ice_month", "all", "mean", "none", 2 -#"ice_model", "LWDN", "LWDN", "ice_month", "all", "mean", "none", 2 -# "ice_model", "RAIN", "RAIN", "ice_month", "all", "mean", "none", 2 -#"ice_model", "RDG_RATE", "RDG_RATE", "ice_month", "all", "mean", "none", 2 -#"ice_model", "RDG_FRAC", "RDG_FRAC", "ice_month", "all", "mean", "none", 2 -# "ice_model", "RUNOFF", "RUNOFF", "ice_month", "all", "mean", "none", 2 -#"ice_model", "RUNOFF_HFLX","RUNOFF_HFLX", "ice_month", "all", "mean", "none", 2 - "ice_model", "SALTF", "SALTF", "ice_month", "all", "mean", "none", 2 -# "ice_model", "SH", "SH", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SIGI", "SIGI", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SIGII", "SIGII", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SLP", "SLP", "ice_month", "all", "mean", "none", 2 - "ice_model", "SNOWFL", "SNOWFL", "ice_month", "all", "mean", "none", 2 - "ice_model", "SN2IC", "SN2IC", "ice_month", "all", "mean", "none", 2 -# "ice_model", "SSH", "SSH", "ice_month", "all", "mean", "none", 2 -# "ice_model", "SSS", "SSS", "ice_month", "all", "mean", "none", 2 -# "ice_model", "SST", "SST", "ice_month", "all", "mean", "none", 2 -#"ice_model", "STRENGTH", "STRENGTH", "ice_month", "all", "mean", "none", 2 -#"ice_model", "STRAIN_ANGLE","STRAIN_ANGLE","ice_month", "all", "mean", "none", 2 -# "ice_model", "SW", "SW", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SWDN", "SWDN", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SW_NIR_DIF", "SW_NIR_DIF", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SW_NIR_DIR", "SW_NIR_DIR", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SW_VIS", "SW_VIS", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SW_VIS_DIF", "SW_VIS_DIF", "ice_month", "all", "mean", "none", 2 -#"ice_model", "SW_VIS_DIR", "SW_VIS_DIR", "ice_month", "all", "mean", "none", 2 - "ice_model", "TMELT", "TMELT", "ice_month", "all", "mean", "none", 2 - "ice_model", "TSN", "TSN", "ice_month", "all", "mean", "none", 2 - "ice_model", "T1", "T1", "ice_month", "all", "mean", "none", 2 - "ice_model", "T2", "T2", "ice_month", "all", "mean", "none", 2 - "ice_model", "T3", "T3", "ice_month", "all", "mean", "none", 2 - "ice_model", "T4", "T4", "ice_month", "all", "mean", "none", 2 -# "ice_model", "UO", "UO", "ice_month", "all", "mean", "none", 2 -# "ice_model", "VO", "VO", "ice_month", "all", "mean", "none", 2 - "ice_model", "XPRT", "XPRT", "ice_month", "all", "mean", "none", 2 - "ice_model", "siu", "siu", "ice_month", "all", "mean", "none", 2 - "ice_model", "siv", "siv", "ice_month", "all", "mean", "none", 2 - "ice_model", "sispeed", "sispeed", "ice_month", "all", "mean", "none", 2 - "ice_model", "STRENGTH_hf","STRENGTH_hf", "ice_month", "all", "mean", "none", 2 - "ice_model", "sitimefrac", "sitimefrac", "ice_month", "all", "mean", "none", 2 - "ice_model", "sitemptop", "sitemptop", "ice_month", "all", "mean", "none", 2 - "ice_model", "siconc", "siconc", "ice_month", "all", "mean", "none", 2 - "ice_model", "sisnconc", "sisnconc", "ice_month", "all", "mean", "none", 2 - "ice_model", "simass", "simass", "ice_month", "all", "mean", "none", 2 - "ice_model", "sisnmass", "sisnmass", "ice_month", "all", "mean", "none", 2 - "ice_model", "sisnthick", "sisnthick", "ice_month", "all", "mean", "none", 2 - "ice_model", "sithick", "sithick", "ice_month", "all", "mean", "none", 2 - "ice_model", "sivol", "sivol", "ice_month", "all", "mean", "none", 2 - "ice_model", "MIB", "MIB", "ice_month", "all", "mean", "none", 2 -"ocean_cobalt_neus", 1, "days", 1, "days", "time" -# 2D -"generic_cobalt", "pp", "pp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "o2os", "o2os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "o2satos", "o2satos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "no3os", "no3os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "nh4os", "nh4os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "po4os", "po4os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "dfeos", "dfeos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sios", "sios", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "chlos", "chlos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "chldiatos", "chldiatos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "chldiazos", "chldiazos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "chlpicoos", "chlpicoos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "chlmiscos", "chlmiscos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "ponos", "ponos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "popos", "popos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "bfeos", "bfeos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "bsios", "bsios", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phynos", "phynos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phypos", "phypos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phyfeos", "phyfeos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "physios", "physios", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "co3os", "co3os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phos", "phos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "dissocos", "dissocos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phycos", "phycos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "zoocos", "zoocos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "baccos", "baccos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "detocos", "detocos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "calcos", "calcos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "aragos", "aragos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phydiatos", "phydiatos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phydiazos", "phydiazos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phypicoos", "phypicoos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "phymiscos", "phymiscos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "zmicroos", "zmicroos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "zmesoos", "zmesoos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "talkos", "talkos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sfc_no3lim_lgp", "sfc_no3lim_lgp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sfc_no3lim_mdp", "sfc_no3lim_mdp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sfc_no3lim_smp", "sfc_no3lim_smp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sfc_irrlim_di", "sfc_irrlim_di", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sfc_irrlim_lgp", "sfc_irrlim_lgp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sfc_irrlim_mdp", "sfc_irrlim_mdp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "sfc_irrlim_smp", "sfc_irrlim_smp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "zsatarag", "zsatarag", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -# 2D integrated -"generic_cobalt", "nsmp_100", "nsmp_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "nmdp_100", "nmdp_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "nlgp_100", "nlgp_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "ndi_100", "ndi_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -# 3D -"ocean_model", "volcello", "volcello", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "no3", "no3", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "po4", "po4", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "chl", "chl", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "o2", "o2", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "omega_arag", "omega_arag", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"generic_cobalt", "expkT", "expkT", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_neus", 1, "days", 1, "days", "time" -"ocean_neus_3hr", 3, "hours", 1, "hours", "time" -# Note: diagnostic subsets must be combined after, -# and mppnccombine will fail if dimensions have different lengths -# (if some variables are on yh/xh and others are on yq/xq) -# 2D -"ocean_model", "MLD_003", "MLD_003", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_model", "MLD_EN1", "MLD_EN1", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_model", "ustar", "ustar", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_model", "rsntds", "rsntds", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -# 3D -"ocean_model", "volcello", "volcello", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_model", "rhopot0", "rhopot0", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_model", "rhoinsitu", "rhoinsitu", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_model", "thetao", "thetao", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -"ocean_model", "so", "so", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 -# 2D hourly -"ocean_model", "rsntds", "rsntds", "ocean_neus_3hr", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 diff --git a/exps/NWA12.COBALT/diag_table.org b/exps/NWA12.COBALT/diag_table.org new file mode 100644 index 000000000..ec2c52c09 --- /dev/null +++ b/exps/NWA12.COBALT/diag_table.org @@ -0,0 +1,1275 @@ +CEFI_NWA12_COBALT_V1 +1993 1 1 0 0 0 + #============================================================================================================================= +# OBGC/COBALT DIAG Table (CAS, 1/17/2018) +#========================================================================================== +#========================================================================================== +# Proposed ESM4 production diagnostics (CAS, 1/11/18) +#========================================================================================== +"ocean_cobalt_sfc", 1, "months", 1, "days", "time", +"ocean_cobalt_btm", 1, "months", 1, "days", "time", +"ocean_cobalt_tracers_int", 1, "months", 1, "days", "time", +"ocean_cobalt_fluxes_int", 1, "months", 1, "days", "time", +"ocean_cobalt_fdet_100", 1, "months", 1, "days", "time", +"ocean_cobalt_tracers_month_z", 1, "months", 1, "days", "time", +"ocean_cobalt_tracers_instant",12, "months", 1, "days", "time", +"ocean_cobalt_daily_2d", 24, "hours", 1, "days", "time", +# +#====================== +# GENERIC OCEAN COBALT DIAGNOSTICS +#====================== +# +# "generic_cobalt","mld03", "mld03", "ocean_cobalt_daily_2d","all","mean","none",2 +# "generic_cobalt","sfc_chl", "sfc_chl", "ocean_cobalt_daily_2d","all","mean","none",2 +# "generic_cobalt","sfc_chl_lgp", "sfc_chl_lgp", "ocean_cobalt_daily_2d","all","mean","none",2 +# "generic_cobalt","sfc_chl_mdp", "sfc_chl_mdp", "ocean_cobalt_daily_2d","all","mean","none",2 +# "generic_cobalt","sfc_chl_smp", "sfc_chl_smp", "ocean_cobalt_daily_2d","all","mean","none",2 +# "generic_cobalt","sfc_chl_di", "sfc_chl_di", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "phos", "phos", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "no3os", "no3os", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "pco2surf", "pco2surf", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "mesozoo_200", "mesozoo_200", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "btm_o2", "btm_o2", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "btm_co3_sol_arag", "btm_co3_sol_arag", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "btm_co3_sol_calc", "btm_co3_sol_calc", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "btm_co3_ion", "btm_co3_ion", "ocean_cobalt_daily_2d","all","mean","none",2 +"generic_cobalt", "btm_htotal", "btm_htotal", "ocean_cobalt_daily_2d","all","mean","none",2 +#=================== +# Generic COBALT surface fields: +#================== + "generic_cobalt","dic_csurf", "dic_csurf", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dic_deltap", "dic_deltap", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dic_kw", "dic_kw", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dic_sc_no", "dic_sc_no", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","pco2surf", "pco2surf", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","o2_alpha", "o2_alpha", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","o2_csurf", "o2_csurf", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","o2_deltap", "o2_deltap", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","o2_kw", "o2_kw", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","o2_sc_no", "o2_sc_no", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dic_stf_gas", "dic_stf_gas", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","o2_stf_gas", "o2_stf_gas", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_dry_fed", "dep_dry_fed", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_dry_nh4", "dep_dry_nh4", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_dry_no3", "dep_dry_no3", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_dry_po4", "dep_dry_po4", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_dry_lith", "dep_dry_lith", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_wet_fed", "dep_wet_fed", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_wet_nh4", "dep_wet_nh4", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_wet_no3", "dep_wet_no3", "ocean_cobalt_sfc","all","mean","none",2 + # no wet dep of po4 + #"generic_cobalt","dep_wet_po4", "dep_wet_po4", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","dep_wet_lith", "dep_wet_lith", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_alk", "runoff_flux_alk", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_dic", "runoff_flux_dic", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_fed", "runoff_flux_fed", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_lith", "runoff_flux_lith", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_no3", "runoff_flux_no3", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_ldon", "runoff_flux_ldon", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_sldon", "runoff_flux_sldon","ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_srdon", "runoff_flux_srdon","ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_ndet", "runoff_flux_ndet", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_pdet", "runoff_flux_pdet", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_po4", "runoff_flux_po4", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_ldop", "runoff_flux_ldop", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_sldop", "runoff_flux_sldop","ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","runoff_flux_srdop", "runoff_flux_srdop","ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_def_fe_di", "sfc_def_fe_di", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_def_fe_lgp", "sfc_def_fe_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_def_fe_mdp", "sfc_def_fe_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_def_fe_smp", "sfc_def_fe_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_felim_di", "sfc_felim_di", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_felim_lgp", "sfc_felim_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_felim_mdp", "sfc_felim_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_felim_smp", "sfc_felim_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_irrlim_di", "sfc_irrlim_di", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_irrlim_lgp", "sfc_irrlim_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_irrlim_mdp", "sfc_irrlim_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_irrlim_smp", "sfc_irrlim_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_theta_di", "sfc_theta_di", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_theta_lgp", "sfc_theta_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_theta_mdp", "sfc_theta_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_theta_smp", "sfc_theta_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_mu_di", "sfc_mu_di", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_mu_lgp", "sfc_mu_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_mu_mdp", "sfc_mu_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_mu_smp", "sfc_mu_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_nh4lim_lgp", "sfc_nh4lim_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_nh4lim_mdp", "sfc_nh4lim_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_nh4lim_smp", "sfc_nh4lim_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_no3lim_lgp", "sfc_no3lim_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_no3lim_mdp", "sfc_no3lim_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_no3lim_smp", "sfc_no3lim_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_po4lim_di", "sfc_po4lim_di", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_po4lim_lgp", "sfc_po4lim_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_po4lim_mdp", "sfc_po4lim_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_po4lim_smp", "sfc_po4lim_smp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_q_fe_2_n_di", "sfc_q_fe_2_n_di", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_q_fe_2_n_lgp", "sfc_q_fe_2_n_lgp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_q_fe_2_n_mdp", "sfc_q_fe_2_n_mdp", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_q_fe_2_n_smp", "sfc_q_fe_2_n_smp", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","pka_nh3", "pka_nh3", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","nh4_stf", "nh4_stf", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","nh4_stf_gas", "nh4_stf_gas", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","nh4_alpha", "nh4_alpha", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","nh4_csurf", "nh4_csurf", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","nh4_deltap", "nh4_deltap", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","nh4_kw", "nh4_kw", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","nh4_sc_no", "nh4_sc_no", "ocean_cobalt_sfc","all","mean","none",2 +# "generic_cobalt","pnh3surf", "pnh3surf", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","mld03", "mld03", "ocean_cobalt_sfc","all","mean","none",2 +# "ocean_model", "h_ML", "h_ML", "ocean_cobalt_sfc","all","mean","none",2 +# "ocean_model", "ePBL_h_ML", "ePBL_h_ML", "ocean_cobalt_sfc","all","mean","none",2 +# "ocean_model", "mlotst", "mlotst", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt_z","irr_mem_sfc", "irr_mem_sfc", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt","sfc_no3", "sfc_no3", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_po4", "sfc_po4", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_sio4", "sfc_sio4", "ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_co3_sol_arag", "sfc_co3_sol_arag","ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_co3_sol_calc", "sfc_co3_sol_calc","ocean_cobalt_sfc","all","mean","none",2 + "generic_cobalt","sfc_co3_ion", "sfc_co3_ion", "ocean_cobalt_sfc","all","mean","none",2 +#=================== +# Generic COBALT bottom fields: +#================== + "generic_cobalt","btm_temp", "btm_temp", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","btm_o2", "btm_o2", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","ffedet_btm", "ffedet_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","ffedi_btm", "ffedi_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","ffetot_btm", "ffetot_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","ffemd_btm", "ffemd_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","ffelg_btm", "ffelg_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","ffe_sed", "ffe_sed", "ocean_cobalt_btm","all","mean","none",2 +# "generic_cobalt","ffe_geotherm", "ffe_geotherm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","flithdet_btm", "flithdet_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fndet_btm", "fndet_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fndi_btm", "fndi_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fntot_btm", "fntot_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fnmd_btm", "fnmd_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fnlg_btm", "fnlg_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fpdet_btm", "fpdet_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fpdi_btm", "fpdi_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fptot_btm", "fptot_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fpmd_btm", "fpmd_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fplg_btm", "fplg_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fsidet_btm", "fsidet_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fsimd_btm", "fsimd_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fsilg_btm", "fsilg_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fcadet_arag_btm", "fcadet_arag_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fcadet_calc_btm", "fcadet_calc_btm", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fcased_burial", "fcased_burial", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fcased_redis", "fcased_redis", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fnfeso4red_sed", "fnfeso4red_sed", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fno3denit_sed", "fno3denit_sed", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fnoxic_sed", "fnoxic_sed", "ocean_cobalt_btm","all","mean","none",2 +# "generic_cobalt","fndet_burial", "fndet_burial", "ocean_cobalt_btm","all","mean","none",2 +# "generic_cobalt","fpdet_burial", "fpdet_burial", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","cased_2d", "cased", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","btm_co3_sol_arag", "btm_co3_sol_arag","ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","btm_co3_sol_calc", "btm_co3_sol_calc","ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","btm_co3_ion", "btm_co3_ion", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","btm_htotal", "btm_htotal", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","fcased_redis_surfresp","fcased_redis_surfresp","ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","cased_redis_coef", "cased_redis_coef", "ocean_cobalt_btm","all","mean","none",2 + "generic_cobalt","cased_redis_delz", "cased_redis_delz", "ocean_cobalt_btm","all","mean","none",2 +#====================== +# Generic COBALT downward fluxes at 100 meters +#====================== + "generic_cobalt","fndet_100", "fndet_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","fntot_100", "fntot_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","fpdet_100", "fpdet_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","fptot_100", "fptot_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","ffedet_100", "ffedet_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","fsidet_100", "fsidet_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","fcadet_calc_100", "fcadet_calc_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","fcadet_arag_100", "fcadet_arag_100", "ocean_cobalt_fdet_100","all","mean","none",2 + "generic_cobalt","flithdet_100", "flithdet_100", "ocean_cobalt_fdet_100","all","mean","none",2 +#======================= +# Generic COBALT integrated tracer variables +#======================= + "generic_cobalt","nsmp_100", "nsmp_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","nmdp_100", "nmdp_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","nlgp_100", "nlgp_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","ndi_100", "ndi_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","silgp_100", "silgp_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","simdp_100", "simdp_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","nsmz_100", "nsmz_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","nmdz_100", "nmdz_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","nlgz_100", "nlgz_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","nbact_100", "nbact_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","don_100", "don_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","ndet_100", "ndet_100", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","mesozoo_200", "mesozoo_200", "ocean_cobalt_tracers_int","all","mean","none",2 + "generic_cobalt","dp_fac", "dp_fac", "ocean_cobalt_tracers_int","all","mean","none",2 +#======================= +# Generic COBALT instant tracer variables (for budgets) +#======================= + "generic_cobalt","wc_vert_int_c", "wc_vert_int_c", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_dic", "wc_vert_int_dic", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_doc", "wc_vert_int_doc", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_poc", "wc_vert_int_poc", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_n", "wc_vert_int_n", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_p", "wc_vert_int_p", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_fe", "wc_vert_int_fe", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_si", "wc_vert_int_si", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_o2", "wc_vert_int_o2", "ocean_cobalt_tracers_instant","all",".false.","none",2 + "generic_cobalt","wc_vert_int_alk", "wc_vert_int_alk", "ocean_cobalt_tracers_instant","all",".false.","none",2 +#======================= +# Generic COBALT integrated flux variables +#======================= + "generic_cobalt","jprod_nsmp_100", "jprod_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nmdp_100", "jprod_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nlgp_100", "jprod_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_ndi_100", "jprod_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nsmp_new_100", "jprod_nsmp_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nmdp_new_100", "jprod_nmdp_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nlgp_new_100", "jprod_nlgp_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_ndi_new_100", "jprod_ndi_new_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_ndi_n2_100", "jprod_ndi_n2_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nsmz_100", "jprod_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nmdz_100", "jprod_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nlgz_100", "jprod_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_nbact_100", "jprod_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_mesozoo_200", "jprod_mesozoo_200", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jzloss_nsmp_100", "jzloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jzloss_nmdp_100", "jzloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jzloss_nlgp_100", "jzloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jzloss_ndi_100", "jzloss_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jaggloss_nsmp_100", "jaggloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jaggloss_nmdp_100", "jaggloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jaggloss_nlgp_100", "jaggloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jvirloss_nsmp_100", "jvirloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jvirloss_nmdp_100", "jvirloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jvirloss_nlgp_100", "jvirloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jmortloss_nsmp_100", "jmortloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jmortloss_nmdp_100", "jmortloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jmortloss_nlgp_100", "jmortloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jmortloss_ndi_100", "jmortloss_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jexuloss_nsmp_100", "jexuloss_nsmp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jexuloss_nmdp_100", "jexuloss_nmdp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jexuloss_nlgp_100", "jexuloss_nlgp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jexuloss_ndi_100", "jexuloss_ndi_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jingest_n_nsmz_100", "jingest_n_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jingest_n_nmdz_100", "jingest_n_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jingest_n_nlgz_100", "jingest_n_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jingest_n_hp_100", "jingest_n_hp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jzloss_nsmz_100", "jzloss_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jzloss_nmdz_100", "jzloss_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jhploss_nmdz_100", "jhploss_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jhploss_nlgz_100", "jhploss_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_ndet_nmdz_100", "jprod_ndet_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_ndet_nlgz_100", "jprod_ndet_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_ndet_hp_100", "jprod_ndet_hp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_don_nsmz_100", "jprod_don_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_don_nmdz_100", "jprod_don_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jremin_n_nsmz_100", "jremin_n_nsmz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jremin_n_nmdz_100", "jremin_n_nmdz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jremin_n_nlgz_100", "jremin_n_nlgz_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jremin_n_hp_100", "jremin_n_hp_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","juptake_ldon_nbact_100", "juptake_ldon_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jvirloss_nbact_100", "jvirloss_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jzloss_nbact_100", "jzloss_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jremin_n_nbact_100", "jremin_n_nbact_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_lithdet_100", "jprod_lithdet_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_sidet_100", "jprod_sidet_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_cadet_calc_100", "jprod_cadet_calc_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt","jprod_cadet_arag_100", "jprod_cadet_arag_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","jremin_ndet_100", "jremin_ndet_100", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jdiss_sidet","wc_vert_int_jdiss_sidet", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jdiss_cadet","wc_vert_int_jdiss_cadet", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jo2resp", "wc_vert_int_jo2resp", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jprod_cadet","wc_vert_int_jprod_cadet", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jno3denit", "wc_vert_int_jno3denit", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jprod_no3nitrif","wc_vert_int_jprod_no3nitrif","ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_juptake_nh4","wc_vert_int_juptake_nh4", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_juptake_no3","wc_vert_int_juptake_no3", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_nfix", "wc_vert_int_nfix", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jprod_nh4", "wc_vert_int_jprod_nh4", "ocean_cobalt_fluxes_int","all","mean","none",2 + #"generic_cobalt ","wc_vert_int_jfe_iceberg","wc_vert_int_jfe_iceberg", "ocean_cobalt_fluxes_int","all","mean","none",2 + #"generic_cobalt ","wc_vert_int_jno3_iceberg","wc_vert_int_jno3_iceberg","ocean_cobalt_fluxes_int","all","mean","none",2 + #"generic_cobalt ","wc_vert_int_jpo4_iceberg","wc_vert_int_jpo4_iceberg","ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_jprod_n2amx", "wc_vert_int_jprod_n2amx", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_net_phyto_resp", "wc_vert_int_net_phyto_resp", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_npp", "wc_vert_int_npp", "ocean_cobalt_fluxes_int","all","mean","none",2 + "generic_cobalt ","wc_vert_int_chemoautopp", "wc_vert_int_chemoautopp", "ocean_cobalt_fluxes_int","all","mean","none",2 +#======================================= +# ocean_cobalt_tracers_month_z +#======================================= +"generic_cobalt_z","htotal", "htotal", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"ocean_model_z","volcello", "volcello", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","chl2sfcchl", "chl2sfcchl", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","jupswim_n_Smz", "jupswim_n_Smz", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","jupswim_n_Mdz", "jupswim_n_Mdz", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","jupswim_n_Lgz", "jupswim_n_Lgz", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","chl", "chl", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","no3", "no3", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","o2", "o2", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","o2", "o2min", "ocean_cobalt_tracers_month_z","all","min","none",2 + "generic_cobalt_z","o2", "o2max", "ocean_cobalt_tracers_month_z","all","max","none",2 +# "generic_cobalt_z","cadet_arag", "cadet_arag", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","cadet_calc", "cadet_calc", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","ldon", "ldon", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","ldop", "ldop", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","lith", "lith", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","lithdet", "lithdet", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","pdet", "pdet", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","srdon", "srdon", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","srdop", "srdop", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","sldon", "sldon", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","sldop", "sldop", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","sidet", "sidet", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","omega_arag", "omega_arag", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","omega_calc", "omega_calc", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","ndi", "ndi", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nlg", "nlg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nmd", "nmd", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nsm", "nsm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","pdi", "pdi", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","plg", "plg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","pmd", "pmd", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","psm", "psm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","q_p_2_n_Sm", "q_p_2_n_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","q_p_2_n_Md", "q_p_2_n_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","q_p_2_n_Lg", "q_p_2_n_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","q_p_2_n_Di", "q_p_2_n_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","silg", "silg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","simd", "simd", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","chl", "chl", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","chl_Lg", "chl_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","chl_Md", "chl_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","chl_Sm", "chl_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","chl_Di", "chl_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","mu_Lg", "mu_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","mu_Md", "mu_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","mu_Sm", "mu_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","mu_Di", "mu_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irrlim_Lg", "irrlim_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irrlim_Md", "irrlim_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irrlim_Sm", "irrlim_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irrlim_Di", "irrlim_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 + # agg_lim diags are not registered + #"generic_cobalt_z","agg_lim_Lg", "agg_lim_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","agg_lim_Md", "agg_lim_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","agg_lim_Sm", "agg_lim_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + #"generic_cobalt_z","agg_lim_Di", "agg_lim_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nbact", "nbact", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nsmz", "nsmz", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nmdz", "nmdz", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nlgz", "nlgz", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","po4", "po4", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","nh4", "nh4", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","fed", "fed", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","fedet", "fedet", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","ndet", "ndet", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","feprime", "feprime", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","kfe_eq_lig", "kfe_eq_lig", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","theta_Lg", "theta_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","theta_Md", "theta_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","theta_Sm", "theta_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","theta_Di", "theta_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irr_mix", "irr_mix", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irr_acclim", "irr_acclim", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irr_inst", "irr_inst", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","irr_mem", "irr_mem", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","vmove_Di", "vmove_Di", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","vmove_Sm", "vmove_Sm", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","vmove_Md", "vmove_Md", "ocean_cobalt_tracers_month_z","all","mean","none",2 + "generic_cobalt_z","vmove_Lg", "vmove_Lg", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","chl2sfcchl", "chl2sfcchl", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","jupswim_n_Smz", "jupswim_n_Smz","ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","jupswim_n_Mdz", "jupswim_n_Mdz","ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","jupswim_n_Lgz", "jupswim_n_Lgz","ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","vmove_Smz", "vmove_Smz", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","vmove_Mdz", "vmove_Mdz", "ocean_cobalt_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","vmove_Lgz", "vmove_Lgz", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","dissic", "dissic", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","dissoc", "dissoc", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","talk", "talk", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","si", "si", "ocean_cobalt_tracers_month_z","all","mean","none",2 +"generic_cobalt_z","co3", "co3", "ocean_cobalt_tracers_month_z","all","mean","none",2 +#============================================================================================================================= +# CMIP6_OMIP_biogeochemistry DIAGNOSTICS JGJ 2017/12/04 +# To be used with GENERIC OCEAN COBALT +# Oyr, Omon and day are requested. +# Additionally, output _z versions of 3-D fields. +# added variables not in spreadsheet (but in OMIP BGC documentation paper) +# Based on Data Request Version_01.00.18 - omitted any fields not in this data request +## 2017/12/11 added volcello to 3-D fields +## 2018/07/13 Updated - removed geolon/geolat, geolon_c/geolat_c, removed redundant volcello +# reorganized and cleaned-up for production sumulations +# Match Data Request 01.00.27b1 +## 2018/07/19 Updated to add P limitation diagnostics, daily mesozoo_200, and remove limndiaz (redundant) +## 2018/08/21 added nh4os, removed fields from ocean_cobalt_omip_tracers_month_z (being saved annual and sfc, and will cut down on disk space) +#============================================================================================================================= +#output files (native horizontal and vertical). Will be remapped to 1x1 +# +"ocean_cobalt_omip_daily", 24, "hours", 1, "days", "time", +"ocean_cobalt_omip_sfc", 1, "months", 1, "days", "time", +"ocean_cobalt_omip_2d", 1, "months", 1, "days", "time", +#"ocean_cobalt_omip_2d_ann", 12, "months", 1, "days", "time", +# +#output files (native horizontal on _z). fields here will be remapped to 1x1_z +# +# "ocean_cobalt_omip_tracers_month_z", 1, "months", 1, "days", "time", +"ocean_cobalt_omip_tracers_year_z", 12, "months", 1, "days", "time", +"ocean_cobalt_omip_rates_year_z", 12, "months", 1, "days", "time", +# +#============================================================================================================================= +# ocean_cobalt_omip_daily +# should we serve publicly as daily ? priority 3 duplicated as monthly priority 2 +#============================================================================================================================= +"generic_cobalt","chlos", "chlos", "ocean_cobalt_omip_daily","all","mean","none",2 +"generic_cobalt","phycos", "phycos", "ocean_cobalt_omip_daily","all","mean","none",2 +# not requested by CMIP/OMIP +# "generic_cobalt","mesozoo_200", "mesozoo_200", "ocean_cobalt_omip_daily","all","mean","none",2 +# +#==================================================================================================================== +# Omon: 2-D Marine Biogeochemical Surface Tracer Fields: ocean_cobalt_omip_sfc +#==================================================================================================================== + "generic_cobalt","dissicos", "dissicos", "ocean_cobalt_omip_sfc","all","mean","none",2 +# pending +# "generic_cobalt","dissicnatos", "dissicnatos", "ocean_cobalt_omip_sfc","all","mean","none",2 +# "generic_cobalt","dissicabioos", "dissicabioos", "ocean_cobalt_omip_sfc","all","mean","none",2 +# "generic_cobalt","dissi14cabioos", "dissi14cabioos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","dissocos", "dissocos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phycos", "phycos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","zoocos", "zoocos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","baccos", "baccos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","detocos", "detocos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","calcos", "calcos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","aragos", "aragos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phydiatos", "phydiatos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phydiazos", "phydiazos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phypicoos", "phypicoos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phymiscos", "phymiscos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","zmicroos", "zmicroos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","zmesoos", "zmesoos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","talkos", "talkos", "ocean_cobalt_omip_sfc","all","mean","none",2 +# pending +# "generic_cobalt","talknatos", "talknatos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phos", "phos", "ocean_cobalt_omip_sfc","all","mean","none",2 +# pending +# "generic_cobalt","phnatos", "phnat", "ocean_cobalt_omip_sfc","all","mean","none",2 +# "generic_cobalt","phabioos", "phabio", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","o2os", "o2os", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","o2satos", "o2satos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","no3os", "no3os", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","nh4os", "nh4os", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","po4os", "po4os", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","dfeos", "dfeos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","sios", "sios", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","chlos", "chlos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","chldiatos", "chldiatos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","chldiazos", "chldiazos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","chlpicoos", "chlpicoos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","chlmiscos", "chlmiscos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","ponos", "ponos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","popos", "popos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","bfeos", "bfeos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","bsios", "bsios", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phynos", "phynos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phypos", "phypos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","phyfeos", "phyfeos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","physios", "physios", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","co3os", "co3os", "ocean_cobalt_omip_sfc","all","mean","none",2 +#pending +# "generic_cobalt","co3natos", "co3natos", "ocean_cobalt_omip_sfc","all","mean","none",2 +# "generic_cobalt","co3abioos", "co3abioos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","co3satcalcos", "co3satcalcos", "ocean_cobalt_omip_sfc","all","mean","none",2 + "generic_cobalt","co3sataragos", "co3sataragos", "ocean_cobalt_omip_sfc","all","mean","none",2 +# +#============================================================================================================================= +# Omon: Additional 2-D Marine Biogeochemical Fields (e.g. vertically integrated, 100m, etc) +#============================================================================================================================= + "generic_cobalt","limndiat", "limndiat", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limnpico", "limnpico", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limnmisc", "limnmisc", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limirrdiat", "limirrdiat", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limirrdiaz", "limirrdiaz", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limirrpico", "limirrpico", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limirrmisc", "limirrmisc", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limfediat", "limfediat", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limfediaz", "limfediaz", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limfepico", "limfepico", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limfemisc", "limfemisc", "ocean_cobalt_omip_2d","all","mean","none",2 +# NOTE: P limitation diagnostics not requested by CMIP + "generic_cobalt","limpdiat", "limpdiat", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limpdiaz", "limpdiaz", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limppico", "limppico", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","limpmisc", "limpmisc", "ocean_cobalt_omip_2d","all","mean","none",2 +# + "generic_cobalt","intpp", "intpp", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intppnitrate", "intppnitrate", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intppdiat", "intppdiat", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intppdiaz", "intppdiaz", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpppico", "intpppico", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intppmisc", "intppmisc", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpbn", "intpbn", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpbp", "intpbp", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpbfe", "intpbfe", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpbsi", "intpbsi", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpcalcite", "intpcalcite", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intparag", "intparag", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","epc100", "epc100", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","epn100", "epn100", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","epp100", "epp100", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","epfe100", "epfe100", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","epsi100", "epsi100", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","epcalc100", "epcalc100", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","eparag100", "eparag100", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intdic", "intdic", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intdoc", "intdoc", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpoc", "intpoc", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","spco2", "spco2", "ocean_cobalt_omip_2d","all","mean","none",2 +# pending +# "generic_cobalt","spco2nat", "spco2nat", "ocean_cobalt_omip_2d","all","mean","none",2 +# "generic_cobalt","spco2abio", "spco2abio", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","dpco2", "dpco2", "ocean_cobalt_omip_2d","all","mean","none",2 +# pending +# "generic_cobalt","dpco2nat", "dpco2nat", "ocean_cobalt_omip_2d","all","mean","none",2 +# "generic_cobalt","dpco2abio", "dpco2abio", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","dpo2", "dpo2", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","fgco2", "fgco2", "ocean_cobalt_omip_2d","all","mean","none",2 +# pending +# "generic_cobalt","fgco2nat", "fgco2nat", "ocean_cobalt_omip_2d","all","mean","none",2 +# "generic_cobalt","fgco2abio", "fgco2abio", "ocean_cobalt_omip_2d","all","mean","none",2 +# "generic_cobalt","fg14co2abio", "fg14co2abio", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","fgo2", "fgo2", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","icfriver", "icfriver", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","fric", "fric", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","ocfriver", "ocfriver", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","froc", "froc", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","intpn2", "intpn2", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","fsn", "fsn", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","frn", "frn", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","fsfe", "fsfe", "ocean_cobalt_omip_2d","all","mean","none",2 + "generic_cobalt","frfe", "frfe", "ocean_cobalt_omip_2d","all","mean","none",2 +# +#============================================================================================================================= +# Oyr: Additional 2-D Marine Biogeochemical Fields +# Will be postprocessed via ts/ann +#============================================================================================================================= +# "generic_cobalt","fgco2", "fgco2", "ocean_cobalt_omip_2d_ann","all","mean","none",2 +# pending +# "generic_cobalt","fgco2nat", "fgco2nat", "ocean_cobalt_omip_2d_ann","all","mean","none",2 +# "generic_cobalt","fgco2abio", "fgco2abio", "ocean_cobalt_omip_2d_ann","all","mean","none",2 +# "generic_cobalt","fg14co2abio", "fg14co2abio", "ocean_cobalt_omip_2d_ann","all","mean","none",2 +# +#============================================================================================================================= +# CMIP6_OMIP_biogeochemistry DIAGNOSTICS JGJ 2016/08/15 +# To be used with GENERIC OCEAN COBALT +# output _z versions of 3-D fields. +#============================================================================================================================= +# Omon: 3-D Marine Biogeochemical Tracer Fields: ocean_cobalt_omip_tracers_month_z +#============================================================================================================================= + #"ocean_model_z","volcello", "volcello", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# +# "generic_cobalt_z","dissic", "dissic", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# pending +# "generic_cobalt_z","dissicnat", "dissicnat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","dissicabio", "dissicabio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","dissi14cabio", "dissi14cabio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","dissoc", "dissoc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phyc", "phyc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","zooc", "zooc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# sufficient to save annually and at sfc for CMIP6 +# "generic_cobalt_z","bacc", "bacc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","detoc", "detoc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","calc", "calc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","arag", "arag", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phydiat", "phydiat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phydiaz", "phydiaz", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phypico", "phypico", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phymisc", "phymisc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","zmicro", "zmicro", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","zmeso", "zmeso", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","talk", "talk", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# pending +# "generic_cobalt_z","talknat", "talknat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","ph", "ph", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# pending +# "generic_cobalt_z","phnat", "phnat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phabio", "phabio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","o2_cmip", "o2", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","o2sat", "o2sat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","no3_cmip", "no3", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","nh4_cmip", "nh4", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","po4_cmip", "po4", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","dfe", "dfe", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","si", "si", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","chl_cmip", "chl", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# sufficient to save annually and at sfc for CMIP6 +# "generic_cobalt_z","chldiat", "chldiat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","chldiaz", "chldiaz", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","chlpico", "chlpico", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","chlmisc", "chlmisc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","pon", "pon", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# sufficient to save annually and at sfc for CMIP6 +# "generic_cobalt_z","pop", "pop", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","bfe", "bfe", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","bsi", "bsi", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phyn", "phyn", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phyp", "phyp", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","phyfe", "phyfe", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","physi", "physi", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","co3", "co3", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# pending +# "generic_cobalt_z","co3nat", "co3nat", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","co3abio", "co3abio", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","co3satcalc", "co3satcalc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","co3satarag", "co3satarag", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# +#============================================================================================================================= +# Additional Omon: 3-D Marine Biogeochemical Fields: ocean_cobalt_omip_tracers_month_z +#============================================================================================================================= +# "generic_cobalt_z","pp", "pp", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","graz", "graz", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# "generic_cobalt_z","expc", "expc", "ocean_cobalt_omip_tracers_month_z","all","mean","none",2 +# +#============================================================================================================================= +# Oyr: 3-D Marine Biogeochemical Tracer Fields: ocean_cobalt_omip_tracers_year_z +#============================================================================================================================= +# "ocean_model_z","volcello", "volcello", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# +# "generic_cobalt_z","dissic", "dissic", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# pending +# "generic_cobalt_z","dissicnat", "dissicnat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","dissicabio", "dissicabio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","dissi14cabio", "dissi14cabio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","dissoc", "dissoc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phyc", "phyc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","zooc", "zooc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","bacc", "bacc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","detoc", "detoc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","calc", "calc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","arag", "arag", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phydiat", "phydiat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phydiaz", "phydiaz", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phypico", "phypico", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phymisc", "phymisc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","zmicro", "zmicro", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","zmeso", "zmeso", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","talk", "talk", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# pending +# "generic_cobalt_z","talknat", "talknat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","ph", "ph", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# pending +# "generic_cobalt_z","phnat", "phnat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phabio", "phabio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","o2_cmip", "o2", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","o2sat", "o2sat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","no3_cmip", "no3", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","nh4_cmip", "nh4", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","po4_cmip", "po4", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","dfe", "dfe", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","si", "si", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","chl_cmip", "chl", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","chldiat", "chldiat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","chldiaz", "chldiaz", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","chlpico", "chlpico", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","chlmisc", "chlmisc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","pon", "pon", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","pop", "pop", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","bfe", "bfe", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","bsi", "bsi", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phyn", "phyn", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phyp", "phyp", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","phyfe", "phyfe", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","physi", "physi", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","co3", "co3", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# pending +# "generic_cobalt_z","co3nat", "co3nat", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","co3abio", "co3abio", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","co3satcalc", "co3satcalc", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# "generic_cobalt_z","co3satarag", "co3satarag", "ocean_cobalt_omip_tracers_year_z","all","mean","none",2 +# +#============================================================================================================================= +# Oyr: 3-D Marine Biogeochemical Rates of Production and Removal: ocean_cobalt_omip_rates_year_z +#============================================================================================================================= +# volcello is needed here of model will crash + "ocean_model_z","volcello", "volcello", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","pp", "pp", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","pnitrate", "pnitrate", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","pbfe", "pbfe", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","pbsi", "pbsi", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","pcalc", "pcalc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","parag", "parag", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","expc", "expc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","expn", "expn", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","expp", "expp", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","expfe", "expfe", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","expsi", "expsi", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","expcalc", "expcalc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","exparag", "exparag", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","remoc", "remoc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","dcalc", "dcalc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","darag", "darag", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","ppdiat", "ppdiat", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","ppdiaz", "ppdiaz", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","pppico", "pppico", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","ppmisc", "ppmisc", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","bddtdic", "bddtdic", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","bddtdin", "bddtdin", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","bddtdip", "bddtdip", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","bddtdife", "bddtdife", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","bddtdisi", "bddtdisi", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","bddtalk", "bddtalk", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","fescav", "fescav", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","fediss", "fediss", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 + "generic_cobalt_z","graz", "graz", "ocean_cobalt_omip_rates_year_z","all","mean","none",2 +# +# MOM6 ocean diagnostics files +"ocean_daily", 1, "days", 1, "days", "time" +"ocean_month_snap", 1, "months", 1, "days", "time" +"ocean_month", 1, "months", 1, "days", "time" +"ocean_month_z", 1, "months", 1, "days", "time" +"ocean_annual", 12, "months", 1, "days", "time" +"ocean_annual_z", 12, "months", 1, "days", "time" +"ocean_static", -1, "months", 1, "days", "time" # ocean_static is a protected name. Do not change this line. +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table G1: static information + "ocean_model", "areacello", "areacello", "ocean_static", "all", "none", "none", 2 + "ocean_model", "deptho", "deptho", "ocean_static", "all", "none", "none", 2 +#"ocean_model", "basin", "basin", "ocean_static", "all", "none", "none", 2 # in /archive/gold/datasets/OM4_025/ +# "ocean_model", "hfgeou", "hfgeou", "ocean_static", "all", "none", "none", 2 # for static geothermal heat + "ocean_model", "sftof", "sftof", "ocean_static", "all", "none", "none", 2 +# Extra static geometry data beyond CMIP6/OMIP Table 2.1 + "ocean_model", "Coriolis", "Coriolis", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolon", "geolon", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolat", "geolat", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolon_c", "geolon_c", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolat_c", "geolat_c", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolon_u", "geolon_u", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolat_u", "geolat_u", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolon_v", "geolon_v", "ocean_static", "all", "none", "none", 2 + "ocean_model", "geolat_v", "geolat_v", "ocean_static", "all", "none", "none", 2 + "ocean_model", "wet", "wet", "ocean_static", "all", "none", "none", 2 + "ocean_model", "wet_c", "wet_c", "ocean_static", "all", "none", "none", 2 + "ocean_model", "wet_u", "wet_u", "ocean_static", "all", "none", "none", 2 + "ocean_model", "wet_v", "wet_v", "ocean_static", "all", "none", "none", 2 + "ocean_model", "dxt", "dxt", "ocean_static", "all", "none", "none", 2 + "ocean_model", "dyt", "dyt", "ocean_static", "all", "none", "none", 2 + "ocean_model", "dxCu", "dxCu", "ocean_static", "all", "none", "none", 2 + "ocean_model", "dyCu", "dyCu", "ocean_static", "all", "none", "none", 2 + "ocean_model", "dxCv", "dxCv", "ocean_static", "all", "none", "none", 2 + "ocean_model", "dyCv", "dyCv", "ocean_static", "all", "none", "none", 2 + "ocean_model", "areacello_cu","areacello_cu","ocean_static", "all", "none", "none", 2 + "ocean_model", "areacello_cv","areacello_cv","ocean_static", "all", "none", "none", 2 + "ocean_model", "areacello_bu","areacello_bu","ocean_static", "all", "none", "none", 2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table H1: scalar fields such as tracers, cell mass/volume, sea level, MLD +# Generally save annuals, and sometimes monthly and daily. + "ocean_model_z", "volcello", "volcello", "ocean_annual_z", "all", "mean", "none",2 # Cell measure for 3d data + "ocean_model_z", "volcello", "volcello", "ocean_month_z", "all", "mean", "none",2 # Cell measure for 3d data + "ocean_model", "volcello", "volcello", "ocean_annual", "all", "mean", "none",2 # Cell measure for 3d data +# "ocean_model", "volcello", "volcello", "ocean_month", "all", "mean", "none",2 # Cell measure for 3d data + "ocean_model", "pbo", "pbo", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "pbo", "pbo", "ocean_month", "all", "mean", "none",2 +# "ocean_model", "pso", "pso", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "pso", "pso", "ocean_month", "all", "mean", "none",2 + "ocean_model", "masscello", "masscello", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "masscello", "masscello", "ocean_month", "all", "mean", "none",2 + "ocean_model", "thkcello", "thkcello", "ocean_annual", "all", "mean", "none",2 # Only needed in native space a static field needs to be provided for CMIP6 +#"ocean_model", "thkcello", "thkcello", "ocean_month", "all", "mean", "none",2 + "ocean_model", "ssh", "ssh", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "zos", "zos", "ocean_month", "all", "mean", "none",2 + "ocean_model", "ssh", "ssh", "ocean_month", "all", "mean", "none",2 +# "ocean_model", "zos", "zos", "ocean_daily", "all", "mean", "none",2 + "ocean_model", "ssh", "ssh", "ocean_daily", "all", "mean", "none",2 +# "ocean_model", "zos", "zosmin", "ocean_daily", "all", "min", "none",2 +# "ocean_model", "zos", "zosmax", "ocean_daily", "all", "max", "none",2 + "ocean_model", "ssh", "sshmin", "ocean_daily", "all", "min", "none",2 + "ocean_model", "ssh", "sshmax", "ocean_daily", "all", "max", "none",2 + "ocean_model", "zossq", "zossq", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "zossq", "zossq", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "zostoga", "zostoga", "ocean_month", "all", "mean", "none",2 # to be done offline + "ocean_model", "thetao", "thetao", "ocean_annual", "all", "mean", "none",2 # if use pre-TEOS10 +#"ocean_model", "thetao", "thetao", "ocean_month", "all", "mean", "none",2 # if use pre-TEOS10 + "ocean_model_z", "thetao", "thetao", "ocean_annual_z", "all", "mean", "none",2 # if use pre-TEOS10 + "ocean_model_z", "thetao", "thetao", "ocean_month_z", "all", "mean", "none",2 # if use pre-TEOS10 + "ocean_model_z", "thetao_xyave", "thetao_xyave", "ocean_annual_z", "all", "mean", "none",2 # if use pre-TEOS10 +#"ocean_model", "bigthetao", "bigthetao", "ocean_annual", "all", "mean", "none",2 # if use TEOS10 +#"ocean_model", "bigthetao", "bigthetao", "ocean_month", "all", "mean", "none",2 # if use TEOS10 + "ocean_model", "tos", "tos", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "tos", "tos", "ocean_month", "all", "mean", "none",2 + "ocean_model", "tos", "tos", "ocean_daily", "all", "mean", "none",2 + "ocean_model", "tos", "tosmin", "ocean_daily", "all", "min" , "none",2 + "ocean_model", "tos", "tosmax", "ocean_daily", "all", "max" , "none",2 + "ocean_model", "tossq", "tossq", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "tossq", "tossq", "ocean_month", "all", "mean", "none",2 + "ocean_model", "tossq", "tossq", "ocean_daily", "all", "mean", "none",2 + "ocean_model", "tob", "tob", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "tob", "tob", "ocean_month", "all", "mean", "none",2 + "ocean_model", "tob", "tob", "ocean_daily", "all", "mean", "none",2 + "ocean_model", "so", "so", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "so", "so", "ocean_month", "all", "mean", "none",2 + "ocean_model_z", "so", "so", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "so", "so", "ocean_month_z", "all", "mean", "none",2 + "ocean_model_z", "so_xyave", "so_xyave", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model", "sos", "sos", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "sos", "sos", "ocean_month", "all", "mean", "none",2 + "ocean_model", "sos", "sos", "ocean_daily", "all", "mean", "none",2 + "ocean_model", "sossq", "sossq", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "sossq", "sossq", "ocean_month", "all", "mean", "none",2 + "ocean_model", "sossq", "sossq", "ocean_daily", "all", "mean", "none",2 + "ocean_model", "sob", "sob", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "sob", "sob", "ocean_month", "all", "mean", "none",2 + "ocean_model", "sob", "sob", "ocean_daily", "all", "mean", "none",2 + # not registered + #"ocean_model_z", "obvfsq", "obvfsq", "ocean_annual_z", "all", "mean", "none",2 + #"ocean_model_z", "obvfsq", "obvfsq", "ocean_month_z", "all", "mean", "none",2 +# "ocean_model", "mlotst", "mlotst", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "mlotst", "mlotst", "ocean_month", "all", "mean", "none",2 +# "ocean_model", "mlotstsq", "mlotstsq", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "mlotstsq", "mlotstsq", "ocean_month", "all", "mean", "none",2 + "ocean_model", "mlotst", "mlotstmin", "ocean_annual", "all", "min", "none",2 + "ocean_model", "mlotst", "mlotstmin", "ocean_month", "all", "min", "none",2 + "ocean_model", "mlotst", "mlotstmax", "ocean_annual", "all", "max", "none",2 + "ocean_model", "mlotst", "mlotstmax", "ocean_month", "all", "max", "none",2 +#"ocean_model", "msftbarot", "msftbarot", "ocean_month", "all", "mean", "none",2 # to be done offline +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table I1: components of vector fields +# (umo,vmo) =net mass transport from residual mean velocity (model resolved + SGS) +# (uhml,vhml)=parameterized mixed layer restratification mass transport +# (uhGM,vhGM)=parameterized eddy-induced mass transport from GM +# (T_adx_2d,T_ady_2d) = heat transport by residual mean advection (yet to code neutral diffusion diagnostic) +# Offline calculations needed for meridional overturning streamfunctions. +#"ocean_model", "uo", "uo", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","uo", "uo", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","uo", "uo", "ocean_month_z", "all", "mean", "none",2 +#"ocean_model", "uo", "uo", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "vo", "vo", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","vo", "vo", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","vo", "vo", "ocean_month_z", "all", "mean", "none",2 +#"ocean_model", "vo", "vo", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "umo", "umo", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","umo", "umo", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","umo", "umo", "ocean_month_z", "all", "mean", "none",2 +#"ocean_model", "vmo", "vmo", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","vmo", "vmo", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","vmo", "vmo", "ocean_month_z", "all", "mean", "none",2 +#"ocean_model", "wmo", "wmo", "ocean_annual", "all", "mean", "none",2 # calculated offline +#"ocean_model", "wmo", "wmo", "ocean_month", "all", "mean", "none",2 # calculated offline +#"ocean_model", "uhml", "uhml", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","uhml", "uhml", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","uhml", "uhml", "ocean_month_z", "all", "mean", "none",2 +#"ocean_model", "vhml", "vhml", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","vhml", "vhml", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","vhml", "vhml", "ocean_month_z", "all", "mean", "none",2 +#"ocean_model", "uhGM", "uhGM", "ocean_annual", "all", "mean", "none",2 +#"ocean_model_z","uhGM", "uhGM", "ocean_annual_z", "all", "mean", "none",2 +#"ocean_model_z","uhGM", "uhGM", "ocean_month_z", "all", "mean", "none",2 +#"ocean_model", "vhGM", "vhGM", "ocean_annual", "all", "mean", "none",2 +#"ocean_model_z","vhGM", "vhGM", "ocean_annual_z", "all", "mean", "none",2 +#"ocean_model_z","vhGM", "vhGM", "ocean_month_z", "all", "mean", "none",2 + "ocean_model_z","uh", "uh", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","vh", "vh", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","T_adx", "T_adx", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","T_ady", "T_ady", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model", "T_adx_2d", "T_adx_2d", "ocean_month", "all", "mean", "none",2 + "ocean_model", "T_ady_2d", "T_ady_2d", "ocean_month", "all", "mean", "none",2 + "ocean_model", "T_adx_2d", "T_adx_2d", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "T_ady_2d", "T_ady_2d", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","S_adx", "S_adx", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","S_ady", "S_ady", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model", "S_adx_2d", "S_adx_2d", "ocean_month", "all", "mean", "none",2 + "ocean_model", "S_ady_2d", "S_ady_2d", "ocean_month", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table J1: in support of mass transport through straits +# net transport of mass through straits is either done offline using +# umo_2d and vmo_2d or via the Sections output just below. + "ocean_model", "umo_2d", "umo_2d", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "vmo_2d", "vmo_2d", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "umo_2d", "umo_2d", "ocean_month", "all", "mean", "none",2 + "ocean_model", "vmo_2d", "vmo_2d", "ocean_month", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table K1: surface mass fluxes + "ocean_model", "prlq", "prlq", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "prsn", "prsn", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "evs", "evs", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "friver", "friver", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "ficeberg", "ficeberg", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "fsitherm", "fsitherm", "ocean_annual", "all", "mean", "none",2 # need code to split ice melt from prlq + "ocean_model", "wfo", "wfo", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "prlq", "prlq", "ocean_month", "all", "mean", "none",2 # MOM6 has ice melt/form added to prlq + "ocean_model", "prsn", "prsn", "ocean_month", "all", "mean", "none",2 + "ocean_model", "evs", "evs", "ocean_month", "all", "mean", "none",2 + "ocean_model", "friver", "friver", "ocean_month", "all", "mean", "none",2 + "ocean_model", "ficeberg", "ficeberg", "ocean_month", "all", "mean", "none",2 + "ocean_model", "fsitherm", "fsitherm", "ocean_month", "all", "mean", "none",2 # need code to split ice melt from prlq + "ocean_model", "wfo", "wfo", "ocean_month", "all", "mean", "none",2 +# extra mass flux information beyond CMIP6/OMIP Table K1 + "ocean_model", "net_massout", "net_massout", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "net_massin", "net_massin", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "net_massout", "net_massout", "ocean_month", "all", "mean", "none",2 + "ocean_model", "net_massin", "net_massin", "ocean_month", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table K2: surface salt fluxes + "ocean_model", "sfdsi", "sfdsi", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "sfriver", "sfriver", "ocean_annual", "all", "mean", "none",2 # to be coded if rivers have salt + "ocean_model", "sfdsi", "sfdsi", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "sfriver", "sfriver", "ocean_month", "all", "mean", "none",2 # to be coded if rivers have salt +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table K3: boundary heat fluxes +# "ocean_model", "hfgeou", "hfgeou", "ocean_annual", "all", "mean", "none",2 # geothermal heat flux is static + "ocean_model", "hfrainds", "hfrainds", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "hfevapds", "hfevapds", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "hfrunoffds", "hfrunoffds", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "hfsnthermds", "hfsnthermds", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "hfsifrazil", "hfsifrazil", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "hfibthermds", "hfibthermds", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "hfsolidrunoffds", "hfsolidrunoffds", "ocean_annual", "all", "mean", "none",2 # =0 if ice = 0C # not registered + "ocean_model", "rlntds", "rlntds", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "hflso", "hflso", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "hfsso", "hfsso", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "rsntds", "rsntds", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "rsdo", "rsdo", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "hfds", "hfds", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "hfgeou", "hfgeou", "ocean_month", "all", "mean", "none",2 # geothermal heat flux is static + "ocean_model", "hfrainds", "hfrainds", "ocean_month", "all", "mean", "none",2 # heat content of lprec fprec condensate + "ocean_model", "hfevapds", "hfevapds", "ocean_month", "all", "mean", "none",2 # heat content of mass leaving ocean + "ocean_model", "hfrunoffds", "hfrunoffds", "ocean_month", "all", "mean", "none",2 # heat content of lrunoff frunoff + "ocean_model", "hfsnthermds", "hfsnthermds", "ocean_month", "all", "mean", "none",2 # latent heat to melt snow + "ocean_model", "hfsifrazil", "hfsifrazil", "ocean_month", "all", "mean", "none",2 # frazil formation +#"ocean_model", "hfsithermds", "hfsithermds", "ocean_month", "all", "mean", "none",2 # computed in SIS2 + "ocean_model", "hfibthermds", "hfibthermds", "ocean_month", "all", "mean", "none",2 # latent heat to melt icebergs +# "ocean_model", "hfsolidrunoffds", "hfsolidrunoffds", "ocean_month", "all", "mean", "none",2 # ne 0 since ice has SST + "ocean_model", "rlntds", "rlntds", "ocean_month", "all", "mean", "none",2 # longwave down + "ocean_model", "hflso", "hflso", "ocean_month", "all", "mean", "none",2 # latent heat for evap+melt + "ocean_model", "hfsso", "hfsso", "ocean_month", "all", "mean", "none",2 # sensible from air-sea and ice-sea + "ocean_model", "rsntds", "rsntds", "ocean_month", "all", "mean", "none",2 # shortwave + "ocean_model", "hfds", "hfds", "ocean_month", "all", "mean", "none",2 # total heat entering ocean surface + "ocean_model", "rsdo", "rsdo", "ocean_month_z", "all", "mean", "none",2 # penetrative shortwave flux at interface +# Extra heat flux terms beyond Table K3 from CMIP6/OMIP + "ocean_model", "net_heat_coupler", "net_heat_coupler", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "heat_content_massin", "heat_content_massin", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "heat_content_massout", "heat_content_massout", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "heat_content_surfwater", "heat_content_surfwater", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "heat_content_fprec", "heat_content_fprec", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "heat_content_cond", "heat_content_cond", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "LwLatSens", "LwLatSens", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "Heat_PmE", "Heat_PmE", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "nonpenSW", "nonpenSW", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "internal_heat", "internal_heat", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "net_heat_coupler", "net_heat_coupler", "ocean_month", "all", "mean", "none",2 + "ocean_model", "heat_content_massin", "heat_content_massin", "ocean_month", "all", "mean", "none",2 + "ocean_model", "heat_content_massout", "heat_content_massout", "ocean_month", "all", "mean", "none",2 + "ocean_model", "heat_content_surfwater", "heat_content_surfwater", "ocean_month", "all", "mean", "none",2 + "ocean_model", "heat_content_fprec", "heat_content_fprec", "ocean_month", "all", "mean", "none",2 + "ocean_model", "heat_content_cond", "heat_content_cond", "ocean_month", "all", "mean", "none",2 + "ocean_model", "LwLatSens", "LwLatSens", "ocean_month", "all", "mean", "none",2 + "ocean_model", "Heat_PmE", "Heat_PmE", "ocean_month", "all", "mean", "none",2 +# "ocean_model", "nonpenSW", "nonpenSW", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "internal_heat", "internal_heat", "ocean_month", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table K4: boundary momentum fluxes + "ocean_model", "tauuo", "tauuo", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "tauvo", "tauvo", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "tauuo", "tauuo", "ocean_month", "all", "mean", "none",2 + "ocean_model", "tauvo", "tauvo", "ocean_month", "all", "mean", "none",2 +# extra mechanical forcing beyond CMIP6/OMIP Table K4 + "ocean_model", "ustar", "ustar", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "ustar", "ustar", "ocean_month", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP/BGC : this table should be computed in generic tracer code +#"ocean_model", "fgcfc11", "fgcfc11", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "fgcfc12", "fgcfc12", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "fgsf6", "fgsf6", "ocean_month", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table L1: table of heat and salt tendencies + "ocean_model", "opottempmint", "opottempmint", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "ocontempmint", "ocontempmint", "ocean_annual", "all", "mean", "none",2 # to be coded if use TEOS10 + "ocean_model", "somint", "somint", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z", "rsdoabsorb", "rsdoabsorb", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "opottemptend", "opottemptend", "ocean_annual_z", "all", "mean", "none",2 +#"ocean_model_z", "opottemprmadvect", "opottemprmadvect", "ocean_annual_z", "all", "mean", "none",2 # T_advection_xy+Th_tendency_vert_remap +# "ocean_model", "opottemppmdiff", "opottemppmdiff", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z", "opottempdiff", "opottempdiff", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "osalttend", "osalttend", "ocean_annual_z", "all", "mean", "none",2 +#"ocean_model_z", "osaltrmadvect", "osaltrmadvect", "ocean_annual_z", "all", "mean", "none",2 # S_advection_xy+Sh_tendency_vert_remap + "ocean_model_z", "osaltpmdiff", "osaltpmdiff", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "osaltdiff", "osaltdiff", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "frazil_heat_tendency", "frazil_heat_tendency", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "T_advection_xy", "T_advection_xy", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "S_advection_xy", "S_advection_xy", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "Th_tendency_vert_remap", "Th_tendency_vert_remap", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "Sh_tendency_vert_remap", "Sh_tendency_vert_remap", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","boundary_forcing_heat_tendency", "boundary_forcing_heat_tendency", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","boundary_forcing_salt_tendency", "boundary_forcing_salt_tendency", "ocean_annual_z", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table M1: vertical tracer diffusivities and potential energy dissipation +"ocean_model_z", "difvho", "difvho", "ocean_annual_z", "all", "mean", "none",2 +"ocean_model_z", "difvso", "difvso", "ocean_annual_z", "all", "mean", "none",2 +#"ocean_model", "tnpeo", "tnpeo", "ocean_annual", "all", "mean", "none",2 # code needed +# ----------------------------------------------------------------------------------------- +# CMIP6/OMIP Table N1: lateral viscosity and diffusivities and impact on kinetic energy +#"ocean_model", "diftrblo", "diftrblo", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "diftrelo", "diftrelo", "ocean_annual", "all", "mean", "none",2 # when neutral tracer diffusion + "ocean_model", "difmxylo", "difmxylo", "ocean_annual", "all", "mean", "none",2 # save if use Laplacian visc + "ocean_model", "difmxybo", "difmxybo", "ocean_annual", "all", "mean", "none",2 + #"ocean_model", "dispkexyfo", "dispkexyfo", "ocean_annual", "all", "mean", "none",2 # not registered +#"ocean_model", "tnkebto", "tnkebto", "ocean_annual", "all", "mean", "none",2 + "ocean_model_z","difmxybo", "difmxybo", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z","dispkexyfo", "dispkexyfo", "ocean_annual_z", "all", "mean", "none",2 +############################################################################################# +###### Diagnostics in addition to CMIP6/OMIP request######################################### +# ----------------------------------------------------------------------------------------- +# High-frequency + "ocean_model", "SSU", "ssu", "ocean_daily", "all", "mean", "none",2 + "ocean_model", "SSV", "ssv", "ocean_daily", "all", "mean", "none",2 +#"ocean_model", "tos", "tos_max", "ocean_daily", "all", "max", "none",2 +#"ocean_model", "tos", "tos_min", "ocean_daily", "all", "min", "none",2 + "ocean_model", "ePBL_h_ML", "omldamax", "ocean_daily", "all", "max", "none",2 +# ----------------------------------------------------------------------------------------- +# various fields + "ocean_model", "e", "e", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "e", "e", "ocean_month", "all", "mean", "none",2 + "ocean_model", "speed", "speed", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "speed", "speed", "ocean_month", "all", "mean", "none",2 + "ocean_model", "KE", "KE", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "KE", "KE", "ocean_month", "all", "mean", "none",2 + "ocean_model", "mass_wt", "mass_wt", "ocean_annual", "all", "mean", "none",2 +"ocean_model_z", "Kd_interface", "Kd_interface", "ocean_annual_z", "all", "mean", "none",2 +"ocean_model_z", "Kd_shear", "Kd_shear", "ocean_annual_z", "all", "mean", "none",2 +"ocean_model_z", "Kd_itides", "Kd_itides", "ocean_annual_z", "all", "mean", "none",2 +"ocean_model_z", "Kd_BBL", "Kd_BBL", "ocean_annual_z", "all", "mean", "none",2 +"ocean_model_z", "Kd_ePBL", "Kd_ePBL", "ocean_annual_z", "all", "mean", "none",2 +"ocean_model_z", "Kd_heat", "Kd_heat", "ocean_annual_z", "all", "mean", "none",2 +"ocean_model_z", "Kd_salt", "Kd_salt", "ocean_annual_z", "all", "mean", "none",2 +# "ocean_model", "TKE_tidal", "TKE_tidal", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "TKE_itidal", "TKE_itidal", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "MLD_003", "MLD_003", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "MLD_003", "MLD_003", "ocean_month", "all", "mean", "none",2 + "ocean_model", "MLD_003", "MLD_003_min", "ocean_annual", "all", "min", "none",2 + "ocean_model", "MLD_003", "MLD_003_max", "ocean_annual", "all", "max", "none",2 + "ocean_model", "MLD_restrat", "MLD_restrat", "ocean_month", "all", "mean", "none",2 + "ocean_model", "udml_restrat", "udml_restrat", "ocean_month", "all", "mean", "none",2 + "ocean_model", "vdml_restrat", "vdml_restrat", "ocean_month", "all", "mean", "none",2 + "ocean_model", "uml_restrat", "uml_restrat", "ocean_month", "all", "mean", "none",2 + "ocean_model", "vml_restrat", "vml_restrat", "ocean_month", "all", "mean", "none",2 + "ocean_model", "MLD_EN1", "MLD_EN1", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "MLD_EN1", "MLD_EN1", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "MSTAR_LT", "MSTAR_LT", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "MSTAR", "MSTAR", "ocean_annual", "all", "mean", "none",2 +#"ocean_model", "MSTAR_LT", "MSTAR_LT", "ocean_month", "all", "mean", "none",2 + "ocean_model", "MSTAR", "MSTAR", "ocean_month", "all", "mean", "none",2 +#"ocean_model", "vintage", "vintage", "ocean_annual", "all", "mean", "none",2 +# MEKE not used +# "ocean_model", "MEKE_Ue", "MEKE_Ue", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "MEKE_Le", "MEKE_Le", "ocean_annual", "all", "mean", "none",2 +# "ocean_model", "MEKE_KH", "MEKE_KH", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "subML_N2", "subML_N2", "ocean_annual", "all", "mean", "none",2 + "ocean_model", "tos", "tos_max", "ocean_annual", "all", "max", "none",2 + "ocean_model", "tos", "tos_min", "ocean_annual", "all", "min", "none",2 + "ocean_model_z", "rhopot0", "rhopot0", "ocean_month_z", "all", "mean", "none",2 + "ocean_model_z", "rhopot0", "rhopot0", "ocean_annual_z", "all", "mean", "none",2 + "ocean_model_z", "rhoinsitu", "rhoinsitu", "ocean_month_z", "all", "mean", "none",2 + "ocean_model_z", "rhoinsitu", "rhoinsitu", "ocean_annual_z", "all", "mean", "none",2 +# ----------------------------------------------------------------------------------------- +# Monthly snapshots + "ocean_model", "mass_wt", "mass_wt", "ocean_month_snap", "all", "none", "none",2 + "ocean_model", "opottempmint","opottempmint","ocean_month_snap", "all", "none", "none",2 + "ocean_model", "somint", "somint", "ocean_month_snap", "all", "none", "none",2 +# ----------------------------------------------------------------------------------------- +# tracer concentration time tendencies due to various processes +# vertical diffusion tendencies for T and S +"ocean_model","diabatic_diff_temp_tendency","diabatic_diff_temp_tendency","ocean_annual","all","mean","none",2 +"ocean_model","diabatic_diff_saln_tendency","diabatic_diff_saln_tendency","ocean_annual","all","mean","none",2 +# neutral diffusion tendencies for T and S +#"ocean_model","ndiff_tracer_conc_tendency_T","ndiff_tracer_conc_tendency_T" ,"ocean_annual","all","mean","none",2 +#"ocean_model","ndiff_tracer_conc_tendency_S","ndiff_tracer_conc_tendency_S" ,"ocean_annual","all","mean","none",2 +# "ocean_model","opottemppmdiff_2d" ,"opottemppmdiff_2d" ,"ocean_annual","all","mean","none",2 +# "ocean_model","osaltpmdiff_2d" ,"osaltpmdiff_2d" ,"ocean_annual","all","mean","none",2 +# net tendencies and lateral advection tendencies for T and S + "ocean_model", "T_tendency", "T_tendency", "ocean_annual","all","mean","none",2 + "ocean_model", "S_tendency", "S_tendency", "ocean_annual","all","mean","none",2 + "ocean_model", "opottemptend_2d", "opottemptend_2d", "ocean_annual","all","mean","none",2 + "ocean_model", "osalttend_2d", "osalttend_2d", "ocean_annual","all","mean","none",2 + "ocean_model", "T_advection_xy_2d", "T_advection_xy_2d", "ocean_annual","all","mean","none",2 + "ocean_model", "S_advection_xy_2d", "S_advection_xy_2d", "ocean_annual","all","mean","none",2 +# tendencies from vertical remapping for T and S +"ocean_model","T_tendency_vert_remap", "T_tendency_vert_remap", "ocean_annual","all","mean","none",2 +"ocean_model","S_tendency_vert_remap", "S_tendency_vert_remap", "ocean_annual","all","mean","none",2 +"ocean_model","Th_tendency_vert_remap_2d", "Th_tendency_vert_remap_2d", "ocean_annual","all","mean","none",2 +"ocean_model","Sh_tendency_vert_remap_2d", "Sh_tendency_vert_remap_2d", "ocean_annual","all","mean","none",2 +# tendencies from boundary terms which have a 3d contribution +"ocean_model","frazil_heat_tendency_2d" ,"frazil_heat_tendency_2d", "ocean_annual","all","mean","none",2 +"ocean_model","boundary_forcing_heat_tendency_2d" ,"boundary_forcing_heat_tendency_2d","ocean_annual","all","mean","none",2 +"ocean_model","boundary_forcing_salt_tendency_2d" ,"boundary_forcing_salt_tendency_2d","ocean_annual","all","mean","none",2 +## output files +"ice_daily", 1, "days", 1, "days", "time" +"ice_month", 1, "months", 1, "days", "time" +"ice_static", -1, "months", 1, "days", "time" +#================ +# ICE DIAGNOSTICS +#================ + "ice_model", "CELL_AREA", "CELL_AREA", "ice_static", "all", "none", "none", 2 + "ice_model", "COSROT", "COSROT", "ice_static", "all", "none", "none", 2 + "ice_model", "GEOLAT", "GEOLAT", "ice_static", "all", "none", "none", 2 + "ice_model", "GEOLON", "GEOLON", "ice_static", "all", "none", "none", 2 + "ice_model", "SINROT", "SINROT", "ice_static", "all", "none", "none", 2 +# Daily sea-ice +#"ice_model", "SST", "SST", "ice_daily", "all", "mean", "none", 2 +# "ice_model", "SSH", "SSH", "ice_daily", "all", "mean", "none", 2 +# "ice_model", "SSS", "SSS", "ice_daily", "all", "mean", "none", 2 + "ice_model", "EXT", "EXT", "ice_daily", "all", "mean", "none", 2 +# Monthly sea-ice +# "ice_model", "CELL_AREA", "CELL_AREA", "ice_month", "all", "none", "none", 2 +# "ice_model", "COSROT", "COSROT", "ice_month", "all", "none", "none", 2 +# "ice_model", "GEOLAT", "GEOLAT", "ice_month", "all", "none", "none", 2 +# "ice_model", "GEOLON", "GEOLON", "ice_month", "all", "none", "none", 2 +# "ice_model", "SINROT", "SINROT", "ice_month", "all", "none", "none", 2 +#"ice_model", "AGE", "AGE", "ice_month", "all", "mean", "none", 2 + "ice_model", "ALB", "ALB", "ice_month", "all", "mean", "none", 2 + "ice_model", "BHEAT", "BHEAT", "ice_month", "all", "mean", "none", 2 + "ice_model", "BMELT", "BMELT", "ice_month", "all", "mean", "none", 2 + "ice_model", "BSNK", "BSNK", "ice_month", "all", "mean", "none", 2 + "ice_model", "CALVING", "CALVING", "ice_month", "all", "mean", "none", 2 + "ice_model", "CALVING_HFLX","CALVING_HFLX","ice_month", "all", "mean", "none", 2 + "ice_model", "CN", "CN", "ice_month", "all", "mean", "none", 2 + "ice_model", "E2MELT", "E2MELT", "ice_month", "all", "mean", "none", 2 +# "ice_model", "EVAP", "EVAP", "ice_month", "all", "mean", "none", 2 + "ice_model", "EXT", "EXT", "ice_month", "all", "mean", "none", 2 + "ice_model", "EXT", "EXT_MIN", "ice_month", "all", "min", "none", 2 + "ice_model", "EXT", "EXT_MAX", "ice_month", "all", "max", "none", 2 + "ice_model", "FA_X", "FA_X", "ice_month", "all", "mean", "none", 2 + "ice_model", "FA_Y", "FA_Y", "ice_month", "all", "mean", "none", 2 +#"ice_model", "FC_X", "FC_X", "ice_month", "all", "mean", "none", 2 +#"ice_model", "FC_Y", "FC_Y", "ice_month", "all", "mean", "none", 2 + "ice_model", "FI_X", "FI_X", "ice_month", "all", "mean", "none", 2 + "ice_model", "FI_Y", "FI_Y", "ice_month", "all", "mean", "none", 2 +#"ice_model", "FW_X", "FW_X", "ice_month", "all", "mean", "none", 2 +#"ice_model", "FW_Y", "FW_Y", "ice_month", "all", "mean", "none", 2 + "ice_model", "FRAZIL", "FRAZIL", "ice_month", "all", "mean", "none", 2 +#"ice_model", "HI_PART", "HI_PART", "ice_month", "all", "mean", "none", 2 + "ice_model", "IX_TRANS", "IX_TRANS", "ice_month", "all", "mean", "none", 2 + "ice_model", "IY_TRANS", "IY_TRANS", "ice_month", "all", "mean", "none", 2 +# "ice_model", "LH", "LH", "ice_month", "all", "mean", "none", 2 + "ice_model", "LSNK", "LSNK", "ice_month", "all", "mean", "none", 2 + "ice_model", "LSRC", "LSRC", "ice_month", "all", "mean", "none", 2 +# "ice_model", "LW", "LW", "ice_month", "all", "mean", "none", 2 +#"ice_model", "LWDN", "LWDN", "ice_month", "all", "mean", "none", 2 +# "ice_model", "RAIN", "RAIN", "ice_month", "all", "mean", "none", 2 +#"ice_model", "RDG_RATE", "RDG_RATE", "ice_month", "all", "mean", "none", 2 +#"ice_model", "RDG_FRAC", "RDG_FRAC", "ice_month", "all", "mean", "none", 2 +# "ice_model", "RUNOFF", "RUNOFF", "ice_month", "all", "mean", "none", 2 +#"ice_model", "RUNOFF_HFLX","RUNOFF_HFLX", "ice_month", "all", "mean", "none", 2 + "ice_model", "SALTF", "SALTF", "ice_month", "all", "mean", "none", 2 +# "ice_model", "SH", "SH", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SIGI", "SIGI", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SIGII", "SIGII", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SLP", "SLP", "ice_month", "all", "mean", "none", 2 + "ice_model", "SNOWFL", "SNOWFL", "ice_month", "all", "mean", "none", 2 + "ice_model", "SN2IC", "SN2IC", "ice_month", "all", "mean", "none", 2 +# "ice_model", "SSH", "SSH", "ice_month", "all", "mean", "none", 2 +# "ice_model", "SSS", "SSS", "ice_month", "all", "mean", "none", 2 +# "ice_model", "SST", "SST", "ice_month", "all", "mean", "none", 2 +#"ice_model", "STRENGTH", "STRENGTH", "ice_month", "all", "mean", "none", 2 +#"ice_model", "STRAIN_ANGLE","STRAIN_ANGLE","ice_month", "all", "mean", "none", 2 +# "ice_model", "SW", "SW", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SWDN", "SWDN", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SW_NIR_DIF", "SW_NIR_DIF", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SW_NIR_DIR", "SW_NIR_DIR", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SW_VIS", "SW_VIS", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SW_VIS_DIF", "SW_VIS_DIF", "ice_month", "all", "mean", "none", 2 +#"ice_model", "SW_VIS_DIR", "SW_VIS_DIR", "ice_month", "all", "mean", "none", 2 + "ice_model", "TMELT", "TMELT", "ice_month", "all", "mean", "none", 2 + "ice_model", "TSN", "TSN", "ice_month", "all", "mean", "none", 2 + "ice_model", "T1", "T1", "ice_month", "all", "mean", "none", 2 + "ice_model", "T2", "T2", "ice_month", "all", "mean", "none", 2 + "ice_model", "T3", "T3", "ice_month", "all", "mean", "none", 2 + "ice_model", "T4", "T4", "ice_month", "all", "mean", "none", 2 +# "ice_model", "UO", "UO", "ice_month", "all", "mean", "none", 2 +# "ice_model", "VO", "VO", "ice_month", "all", "mean", "none", 2 + "ice_model", "XPRT", "XPRT", "ice_month", "all", "mean", "none", 2 + "ice_model", "siu", "siu", "ice_month", "all", "mean", "none", 2 + "ice_model", "siv", "siv", "ice_month", "all", "mean", "none", 2 + "ice_model", "sispeed", "sispeed", "ice_month", "all", "mean", "none", 2 + "ice_model", "STRENGTH_hf","STRENGTH_hf", "ice_month", "all", "mean", "none", 2 + "ice_model", "sitimefrac", "sitimefrac", "ice_month", "all", "mean", "none", 2 + "ice_model", "sitemptop", "sitemptop", "ice_month", "all", "mean", "none", 2 + "ice_model", "siconc", "siconc", "ice_month", "all", "mean", "none", 2 + "ice_model", "sisnconc", "sisnconc", "ice_month", "all", "mean", "none", 2 + "ice_model", "simass", "simass", "ice_month", "all", "mean", "none", 2 + "ice_model", "sisnmass", "sisnmass", "ice_month", "all", "mean", "none", 2 + "ice_model", "sisnthick", "sisnthick", "ice_month", "all", "mean", "none", 2 + "ice_model", "sithick", "sithick", "ice_month", "all", "mean", "none", 2 + "ice_model", "sivol", "sivol", "ice_month", "all", "mean", "none", 2 + "ice_model", "MIB", "MIB", "ice_month", "all", "mean", "none", 2 +"ocean_cobalt_neus", 1, "days", 1, "days", "time" +# 2D +"generic_cobalt", "pp", "pp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "o2os", "o2os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "o2satos", "o2satos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "no3os", "no3os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "nh4os", "nh4os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "po4os", "po4os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "dfeos", "dfeos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sios", "sios", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "chlos", "chlos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "chldiatos", "chldiatos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "chldiazos", "chldiazos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "chlpicoos", "chlpicoos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "chlmiscos", "chlmiscos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "ponos", "ponos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "popos", "popos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "bfeos", "bfeos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "bsios", "bsios", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phynos", "phynos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phypos", "phypos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phyfeos", "phyfeos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "physios", "physios", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "co3os", "co3os", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phos", "phos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "dissocos", "dissocos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phycos", "phycos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "zoocos", "zoocos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "baccos", "baccos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "detocos", "detocos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "calcos", "calcos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "aragos", "aragos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phydiatos", "phydiatos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phydiazos", "phydiazos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phypicoos", "phypicoos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "phymiscos", "phymiscos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "zmicroos", "zmicroos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "zmesoos", "zmesoos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "talkos", "talkos", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sfc_no3lim_lgp", "sfc_no3lim_lgp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sfc_no3lim_mdp", "sfc_no3lim_mdp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sfc_no3lim_smp", "sfc_no3lim_smp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sfc_irrlim_di", "sfc_irrlim_di", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sfc_irrlim_lgp", "sfc_irrlim_lgp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sfc_irrlim_mdp", "sfc_irrlim_mdp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "sfc_irrlim_smp", "sfc_irrlim_smp", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "zsatarag", "zsatarag", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +# 2D integrated +"generic_cobalt", "nsmp_100", "nsmp_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "nmdp_100", "nmdp_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "nlgp_100", "nlgp_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "ndi_100", "ndi_100", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +# 3D +"ocean_model", "volcello", "volcello", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "no3", "no3", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "po4", "po4", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "chl", "chl", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "o2", "o2", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "omega_arag", "omega_arag", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"generic_cobalt", "expkT", "expkT", "ocean_cobalt_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_neus", 1, "days", 1, "days", "time" +"ocean_neus_3hr", 3, "hours", 1, "hours", "time" +# Note: diagnostic subsets must be combined after, +# and mppnccombine will fail if dimensions have different lengths +# (if some variables are on yh/xh and others are on yq/xq) +# 2D +"ocean_model", "MLD_003", "MLD_003", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_model", "MLD_EN1", "MLD_EN1", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_model", "ustar", "ustar", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_model", "rsntds", "rsntds", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +# 3D +"ocean_model", "volcello", "volcello", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_model", "rhopot0", "rhopot0", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_model", "rhoinsitu", "rhoinsitu", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_model", "thetao", "thetao", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +"ocean_model", "so", "so", "ocean_neus", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 +# 2D hourly +"ocean_model", "rsntds", "rsntds", "ocean_neus_3hr", "all", "mean", "-76.47 -64.48 34.89 45.78 0 400",2 diff --git a/exps/NWA12.COBALT/driver.sh b/exps/NWA12.COBALT/driver.sh index 414ba23e6..cbbcdc4bf 100644 --- a/exps/NWA12.COBALT/driver.sh +++ b/exps/NWA12.COBALT/driver.sh @@ -1,16 +1,20 @@ #!/bin/bash -#SBATCH --nodes=13 -#SBATCH --time=180 +#SBATCH --nodes=5 +#SBATCH --time=60 #SBATCH --job-name="NWA12.COBALT" #SBATCH --output=NWA12.COBALT_o.%j #SBATCH --error=NWA12.COBALT_e.%j -#SBATCH --qos=normal +#SBATCH --qos=debug #SBATCH --partition=batch #SBATCH --clusters=c5 #SBATCH --account=cefi # -ntasks=1646 +ntasks1=625 +ntasks2=400 + +# +echo "Test started: " `date` # echo "link datasets ..." @@ -18,18 +22,22 @@ pushd ../ ln -fs /gpfs/f5/cefi/world-shared/datasets ./ popd -# -rm -rf RESTART* - -# -echo "Test started: " `date` +echo "run 25x25 48hrs test ..." +ln -fs input.nml_48hr input.nml +pushd INPUT/ +ln -fs MOM_layout_25 MOM_layout +ln -fs MOM_layout_25 SIS_layout +popd +srun --ntasks ${ntasks1} --cpus-per-task=1 --export=ALL ../../builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2 > out1 2>err1 +mv RESTART RESTART_48hrs +mv ocean.stats RESTART_48hrs # -echo "run 24hrs test ..." +echo "run 25x25 24hrs test ..." ln -fs input.nml_24hr input.nml -srun --ntasks ${ntasks} --cpus-per-task=1 --export=ALL ../../builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2 > out 2>err +srun --ntasks ${ntasks1} --cpus-per-task=1 --export=ALL ../../builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2 > out2 2>err2 mv RESTART RESTART_24hrs -mv ocean.stats* RESTART_24hrs +mv ocean.stats RESTART_24hrs # echo "link restart files ..." @@ -38,23 +46,23 @@ ln -fs ../RESTART_24hrs/* ./ popd # -echo "run 24hrs rst test ..." +echo "run 20x20 24hrs rst test ..." ln -fs input.nml_24hr_rst input.nml -srun --ntasks ${ntasks} --cpus-per-task=1 --export=ALL ../../builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2 > out2 2>err2 +pushd INPUT/ +ln -fs MOM_layout_20 MOM_layout +ln -fs MOM_layout_20 SIS_layout +popd +srun --ntasks ${ntasks2} --cpus-per-task=1 --export=ALL ../../builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2 > out3 2>err3 mv RESTART RESTART_24hrs_rst mv ocean.stats RESTART_24hrs_rst -# -#echo "run 48hrs test ..." -#srun --ntasks ${ntasks} --cpus-per-task=1 --export=ALL ../../builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2 > out 2>err - # Define the directories containing the files DIR1="./RESTART_24hrs_rst" -DIR2="/gpfs/f5/cefi/proj-shared/github/ci_data/reference/main/NWA12.COBALT/RESTART" +DIR2="./RESTART_48hrs" # Define the files to compare -FILES=("$DIR2"/MOM.res*.nc) +FILES=("$DIR2"/*.nc) # Iterate over the files for FILE in "${FILES[@]}"; do diff --git a/xmls/NWA12/CEFI_NWA12_cobalt.xml b/xmls/NWA12/CEFI_NWA12_cobalt.xml index 1666ddb38..5994569cd 100644 --- a/xmls/NWA12/CEFI_NWA12_cobalt.xml +++ b/xmls/NWA12/CEFI_NWA12_cobalt.xml @@ -583,7 +583,10 @@ cat > $work/INPUT/MOM_override << MOM_OVERRIDE_EOF #override CHL_FROM_FILE = False #override DO_GEOTHERMAL = True #override GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc" -#override EPBL_ANSWER_DATE = 20231231 +#override EPBL_ANSWER_DATE = 20231231 +#override MLD_ITERATION_GUESS = False +#override REMAP_AUXILIARY_VARS = False +#override EQN_OF_STATE = "WRIGHT_FULL" MOM_OVERRIDE_EOF if ( $currentSeg == 1 ) then echo "#override DT_THERM = 1200.0" >> $work/INPUT/MOM_override diff --git a/xmls/NWA12/MOM_inputs/2024_03/MOM_input b/xmls/NWA12/MOM_inputs/2024_03/MOM_input index 870b00a45..a8f50bc63 100644 --- a/xmls/NWA12/MOM_inputs/2024_03/MOM_input +++ b/xmls/NWA12/MOM_inputs/2024_03/MOM_input @@ -680,9 +680,9 @@ SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 ! Misc DO_GEOTHERMAL = False EPBL_MLD_BISECTION = True -MLD_ITERATION_GUESS = True +!MLD_ITERATION_GUESS = True EPBL_MLD_MAX_ITS = 40 BBL_USE_EOS = True AGGREGATE_FW_FORCING = True EQN_OF_STATE = "WRIGHT_FULL" -REMAP_AUXILIARY_VARS = True +!REMAP_AUXILIARY_VARS = True From c6d68b035cbf0258fa7eec4b4ed944dd2f82c2df Mon Sep 17 00:00:00 2001 From: yuchengt900 Date: Mon, 22 Apr 2024 18:44:25 -0400 Subject: [PATCH 2/6] chnage to ref answer folder --- exps/NWA12.COBALT/driver.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/exps/NWA12.COBALT/driver.sh b/exps/NWA12.COBALT/driver.sh index cbbcdc4bf..5229d8bd2 100644 --- a/exps/NWA12.COBALT/driver.sh +++ b/exps/NWA12.COBALT/driver.sh @@ -59,7 +59,7 @@ mv ocean.stats RESTART_24hrs_rst # Define the directories containing the files DIR1="./RESTART_24hrs_rst" -DIR2="./RESTART_48hrs" +DIR2="/gpfs/f5/cefi/proj-shared/github/ci_data/reference/main/NWA12.COBALT/RESTART" # Define the files to compare FILES=("$DIR2"/*.nc) From 994943d14521b33ed11e25c5cf1672c821fc780a Mon Sep 17 00:00:00 2001 From: yuchengt900 Date: Mon, 22 Apr 2024 22:52:02 -0400 Subject: [PATCH 3/6] Forget parameter_doc files --- exps/NWA12.COBALT/MOM_parameter_doc.all | 2269 +++++++++++++++++ exps/NWA12.COBALT/MOM_parameter_doc.debugging | 85 + exps/NWA12.COBALT/MOM_parameter_doc.layout | 69 + exps/NWA12.COBALT/MOM_parameter_doc.short | 692 +++++ exps/NWA12.COBALT/SIS.available_diags | 426 ++++ exps/NWA12.COBALT/SIS_fast.available_diags | 57 + exps/NWA12.COBALT/SIS_parameter_doc.all | 513 ++++ exps/NWA12.COBALT/SIS_parameter_doc.debugging | 66 + exps/NWA12.COBALT/SIS_parameter_doc.layout | 53 + exps/NWA12.COBALT/SIS_parameter_doc.short | 116 + 10 files changed, 4346 insertions(+) create mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.all create mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.debugging create mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.layout create mode 100644 exps/NWA12.COBALT/MOM_parameter_doc.short create mode 100644 exps/NWA12.COBALT/SIS.available_diags create mode 100644 exps/NWA12.COBALT/SIS_fast.available_diags create mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.all create mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.debugging create mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.layout create mode 100644 exps/NWA12.COBALT/SIS_parameter_doc.short diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.all b/exps/NWA12.COBALT/MOM_parameter_doc.all new file mode 100644 index 000000000..3caeb856c --- /dev/null +++ b/exps/NWA12.COBALT/MOM_parameter_doc.all @@ -0,0 +1,2269 @@ +! This file was written by the model and records all non-layout or debugging parameters used at run-time. + +! === module MOM === +SPLIT = True ! [Boolean] default = True + ! Use the split time stepping if true. +SPLIT_RK2B = False ! [Boolean] default = False + ! If true, use a version of the split explicit time stepping scheme that + ! exchanges velocities with step_MOM that have the average barotropic phase over + ! a baroclinic timestep rather than the instantaneous barotropic phase. +CALC_RHO_FOR_SEA_LEVEL = False ! [Boolean] default = False + ! If true, the in-situ density is used to calculate the effective sea level that + ! is returned to the coupler. If false, the Boussinesq parameter RHO_0 is used. +ENABLE_THERMODYNAMICS = True ! [Boolean] default = True + ! If true, Temperature and salinity are used as state variables. +USE_EOS = True ! [Boolean] default = True + ! If true, density is calculated from temperature and salinity with an equation + ! of state. If USE_EOS is true, ENABLE_THERMODYNAMICS must be true as well. +DIABATIC_FIRST = True ! [Boolean] default = False + ! If true, apply diabatic and thermodynamic processes, including buoyancy + ! forcing and mass gain or loss, before stepping the dynamics forward. +USE_CONTEMP_ABSSAL = False ! [Boolean] default = False + ! If true, the prognostics T&S are the conservative temperature and absolute + ! salinity. Care should be taken to convert them to potential temperature and + ! practical salinity before exchanging them with the coupler and/or reporting + ! T&S diagnostics. +ADIABATIC = False ! [Boolean] default = False + ! There are no diapycnal mass fluxes if ADIABATIC is true. This assumes that KD + ! = 0.0 and that there is no buoyancy forcing, but makes the model faster by + ! eliminating subroutine calls. +DO_DYNAMICS = True ! [Boolean] default = True + ! If False, skips the dynamics calls that update u & v, as well as the gravity + ! wave adjustment to h. This may be a fragile feature, but can be useful during + ! development +OFFLINE_TRACER_MODE = False ! [Boolean] default = False + ! If true, barotropic and baroclinic dynamics, thermodynamics are all bypassed + ! with all the fields necessary to integrate the tracer advection and diffusion + ! equation are read in from files stored from a previous integration of the + ! prognostic model. NOTE: This option only used in the ocean_solo_driver. +USE_REGRIDDING = True ! [Boolean] default = False + ! If True, use the ALE algorithm (regridding/remapping). If False, use the + ! layered isopycnal algorithm. +REMAP_UV_USING_OLD_ALG = False ! [Boolean] default = False + ! If true, uses the old remapping-via-a-delta-z method for remapping u and v. If + ! false, uses the new method that remaps between grids described by an old and + ! new thickness. +REMAP_AUXILIARY_VARS = False ! [Boolean] default = False + ! If true, apply ALE remapping to all of the auxiliary 3-dimensional variables + ! that are needed to reproduce across restarts, similarly to what is already + ! being done with the primary state variables. The default should be changed to + ! true. +BULKMIXEDLAYER = False ! [Boolean] default = False + ! If true, use a Kraus-Turner-like bulk mixed layer with transitional buffer + ! layers. Layers 1 through NKML+NKBL have variable densities. There must be at + ! least NKML+NKBL+1 layers if BULKMIXEDLAYER is true. BULKMIXEDLAYER can not be + ! used with USE_REGRIDDING. The default is influenced by ENABLE_THERMODYNAMICS. +THICKNESSDIFFUSE = False ! [Boolean] default = False + ! If true, isopycnal surfaces are diffused with a Laplacian coefficient of KHTH. +APPLY_INTERFACE_FILTER = False ! [Boolean] default = False + ! If true, model interface heights are subjected to a grid-scale dependent + ! spatial smoothing, often with biharmonic filter. +USE_POROUS_BARRIER = True ! [Boolean] default = True + ! If true, use porous barrier to constrain the widths and face areas at the + ! edges of the grid cells. +BATHYMETRY_AT_VEL = False ! [Boolean] default = False + ! If true, there are separate values for the basin depths at velocity points. + ! Otherwise the effects of topography are entirely determined from thickness + ! points. +DT = 400.0 ! [s] + ! The (baroclinic) dynamics time step. The time-step that is actually used will + ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode + ! or the coupling timestep in coupled mode.) +DT_THERM = 1200.0 ! [s] default = 400.0 + ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be + ! an integer multiple of DT and less than the forcing or coupling time-step, + ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer + ! multiple of the coupling timestep. By default DT_THERM is set to DT. +THERMO_SPANS_COUPLING = False ! [Boolean] default = False + ! If true, the MOM will take thermodynamic and tracer timesteps that can be + ! longer than the coupling timestep. The actual thermodynamic timestep that is + ! used in this case is the largest integer multiple of the coupling timestep + ! that is less than or equal to DT_THERM. +HMIX_SFC_PROP = 1.0 ! [m] default = 1.0 + ! If BULKMIXEDLAYER is false, HMIX_SFC_PROP is the depth over which to average + ! to find surface properties like SST and SSS or density (but not surface + ! velocities). +HMIX_UV_SFC_PROP = 0.0 ! [m] default = 0.0 + ! If BULKMIXEDLAYER is false, HMIX_UV_SFC_PROP is the depth over which to + ! average to find surface flow properties, SSU, SSV. A non-positive value + ! indicates no averaging. +HFREEZE = -1.0 ! [m] default = -1.0 + ! If HFREEZE > 0, melt potential will be computed. The actual depth over which + ! melt potential is computed will be min(HFREEZE, OBLD), where OBLD is the + ! boundary layer depth. If HFREEZE <= 0 (default), melt potential will not be + ! computed. +INTERPOLATE_P_SURF = False ! [Boolean] default = False + ! If true, linearly interpolate the surface pressure over the coupling time + ! step, using the specified value at the end of the step. +DTBT_RESET_PERIOD = 1200.0 ! [s] default = 1200.0 + ! The period between recalculations of DTBT (if DTBT <= 0). If DTBT_RESET_PERIOD + ! is negative, DTBT is set based only on information available at + ! initialization. If 0, DTBT will be set every dynamics time step. The default + ! is set by DT_THERM. This is only used if SPLIT is true. +FRAZIL = True ! [Boolean] default = False + ! If true, water freezes if it gets too cold, and the accumulated heat deficit + ! is returned in the surface state. FRAZIL is only used if + ! ENABLE_THERMODYNAMICS is true. +DO_GEOTHERMAL = True ! [Boolean] default = False + ! If true, apply geothermal heating. +BOUND_SALINITY = True ! [Boolean] default = False + ! If true, limit salinity to being positive. (The sea-ice model may ask for more + ! salt than is available and drive the salinity negative otherwise.) +MIN_SALINITY = 0.0 ! [PPT] default = 0.0 + ! The minimum value of salinity when BOUND_SALINITY=True. +SALINITY_UNDERFLOW = 0.0 ! [PPT] default = 0.0 + ! A tiny value of salinity below which the it is set to 0. For reference, one + ! molecule of salt per square meter of ocean is of order 1e-29 ppt. +TEMPERATURE_UNDERFLOW = 0.0 ! [degC] default = 0.0 + ! A tiny magnitude of temperatures below which they are set to 0. +C_P = 3992.0 ! [J kg-1 K-1] default = 3991.86795711963 + ! The heat capacity of sea water, approximated as a constant. This is only used + ! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10 + ! definition of conservative temperature. +USE_PSURF_IN_EOS = True ! [Boolean] default = True + ! If true, always include the surface pressure contributions in equation of + ! state calculations. +P_REF = 2.0E+07 ! [Pa] default = 2.0E+07 + ! The pressure that is used for calculating the coordinate density. (1 Pa = 1e4 + ! dbar, so 2e7 is commonly used.) This is only used if USE_EOS and + ! ENABLE_THERMODYNAMICS are true. +FIRST_DIRECTION = 0 ! default = 0 + ! An integer that indicates which direction goes first in parts of the code that + ! use directionally split updates, with even numbers (or 0) used for x- first + ! and odd numbers used for y-first. +ALTERNATE_FIRST_DIRECTION = False ! [Boolean] default = False + ! If true, after every dynamic timestep alternate whether the x- or y- direction + ! updates occur first in directionally split parts of the calculation. If this + ! is true, FIRST_DIRECTION applies at the start of a new run or if the next + ! first direction can not be found in the restart file. +CHECK_BAD_SURFACE_VALS = False ! [Boolean] default = False + ! If true, check the surface state for ridiculous values. +DEFAULT_ANSWER_DATE = 99991231 ! default = 99991231 + ! This sets the default value for the various _ANSWER_DATE parameters. +SURFACE_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the expressions for the surface properties. Values below + ! 20190101 recover the answers from the end of 2018, while higher values use + ! updated and more robust forms of the same expressions. +USE_DIABATIC_TIME_BUG = False ! [Boolean] default = False + ! If true, uses the wrong calendar time for diabatic processes, as was done in + ! MOM6 versions prior to February 2018. This is not recommended. +SAVE_INITIAL_CONDS = False ! [Boolean] default = False + ! If true, write the initial conditions to a file given by IC_OUTPUT_FILE. +IC_OUTPUT_FILE = "MOM_IC" ! default = "MOM_IC" + ! The file into which to write the initial conditions. +WRITE_GEOM = 0 ! default = 1 + ! If =0, never write the geometry and vertical grid files. If =1, write the + ! geometry and vertical grid files only for a new simulation. If =2, always + ! write the geometry and vertical grid files. Other values are invalid. +USE_DBCLIENT = False ! [Boolean] default = False + ! If true, initialize a client to a remote database that can be used for online + ! analysis and machine-learning inference. +ICE_SHELF = False ! [Boolean] default = False + ! If true, enables the ice shelf model. +USE_PARTICLES = False ! [Boolean] default = False + ! If true, use the particles package. +USE_UH_PARTICLES = False ! [Boolean] default = False + ! If true, use the uh velocity in the particles package. +ENSEMBLE_OCEAN = False ! [Boolean] default = False + ! If False, The model is being run in serial mode as a single realization. If + ! True, The current model realization is part of a larger ensemble and at the + ! end of step MOM, we will perform a gather of the ensemble members for + ! statistical evaluation and/or data assimilation. +HOMOGENIZE_FORCINGS = False ! [Boolean] default = False + ! If True, homogenize the forces and fluxes. + +! === module MOM_domains === +REENTRANT_X = False ! [Boolean] default = True + ! If true, the domain is zonally reentrant. +REENTRANT_Y = False ! [Boolean] default = False + ! If true, the domain is meridionally reentrant. +TRIPOLAR_N = False ! [Boolean] default = False + ! Use tripolar connectivity at the northern edge of the domain. With + ! TRIPOLAR_N, NIGLOBAL must be even. +NIGLOBAL = 775 ! + ! The total number of thickness grid points in the x-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. +NJGLOBAL = 845 ! + ! The total number of thickness grid points in the y-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. +NIHALO = 4 ! default = 4 + ! The number of halo points on each side in the x-direction. How this is set + ! varies with the calling component and static or dynamic memory configuration. +NJHALO = 4 ! default = 4 + ! The number of halo points on each side in the y-direction. How this is set + ! varies with the calling component and static or dynamic memory configuration. + +! === module MOM_hor_index === +! Sets the horizontal array index types. + +! === module MOM_grid === +! Parameters providing information about the lateral grid. +REFERENCE_HEIGHT = 0.0 ! [m] default = 0.0 + ! A reference value for geometric height fields, such as bathyT. + +! === module MOM_fixed_initialization === +INPUTDIR = "INPUT" ! default = "." + ! The directory in which input files are found. + +! === module MOM_grid_init === +GRID_CONFIG = "mosaic" ! + ! A character string that determines the method for defining the horizontal + ! grid. Current options are: + ! mosaic - read the grid from a mosaic (supergrid) + ! file set by GRID_FILE. + ! cartesian - use a (flat) Cartesian grid. + ! spherical - use a simple spherical grid. + ! mercator - use a Mercator spherical grid. +GRID_FILE = "ocean_hgrid.nc" ! + ! Name of the file from which to read horizontal grid data. +USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = False + ! If true, use older code that incorrectly sets the longitude in some points + ! along the tripolar fold to be off by 360 degrees. +RAD_EARTH = 6.378E+06 ! [m] default = 6.378E+06 + ! The radius of the Earth. +TOPO_CONFIG = "file" ! + ! This specifies how bathymetry is specified: + ! file - read bathymetric information from the file + ! specified by (TOPO_FILE). + ! flat - flat bottom set to MAXIMUM_DEPTH. + ! bowl - an analytically specified bowl-shaped basin + ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. + ! spoon - a similar shape to 'bowl', but with an vertical + ! wall at the southern face. + ! halfpipe - a zonally uniform channel with a half-sine + ! profile in the meridional direction. + ! bbuilder - build topography from list of functions. + ! benchmark - use the benchmark test case topography. + ! Neverworld - use the Neverworld test case topography. + ! DOME - use a slope and channel configuration for the + ! DOME sill-overflow test case. + ! ISOMIP - use a slope and channel configuration for the + ! ISOMIP test case. + ! DOME2D - use a shelf and slope configuration for the + ! DOME2D gravity current/overflow test case. + ! Kelvin - flat but with rotated land mask. + ! seamount - Gaussian bump for spontaneous motion test case. + ! dumbbell - Sloshing channel with reservoirs on both ends. + ! shelfwave - exponential slope for shelfwave test case. + ! Phillips - ACC-like idealized topography used in the Phillips config. + ! dense - Denmark Strait-like dense water formation and overflow. + ! USER - call a user modified routine. +TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" + ! The file from which the bathymetry is read. +TOPO_VARNAME = "depth" ! default = "depth" + ! The name of the bathymetry variable in TOPO_FILE. +TOPO_EDITS_FILE = "" ! default = "" + ! The file from which to read a list of i,j,z topography overrides. +ALLOW_LANDMASK_CHANGES = False ! [Boolean] default = False + ! If true, allow topography overrides to change land mask. +MINIMUM_DEPTH = 4.0 ! [m] default = 0.0 + ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is + ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is + ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than + ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. +MASKING_DEPTH = 1.0 ! [m] default = -9999.0 + ! The depth below which to mask points as land points, for which all fluxes are + ! zeroed out. MASKING_DEPTH is ignored if it has the special default value. +MAXIMUM_DEPTH = 6500.0 ! [m] + ! The maximum depth of the ocean. + +! === module MOM_open_boundary === +! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, +! if any. +OBC_NUMBER_OF_SEGMENTS = 3 ! default = 0 + ! The number of open boundary segments. +OBC_ZERO_VORTICITY = False ! [Boolean] default = False + ! If true, sets relative vorticity to zero on open boundaries. +OBC_FREESLIP_VORTICITY = False ! [Boolean] default = True + ! If true, sets the normal gradient of tangential velocity to zero in the + ! relative vorticity on open boundaries. This cannot be true if another + ! OBC_XXX_VORTICITY option is True. +OBC_COMPUTED_VORTICITY = True ! [Boolean] default = False + ! If true, uses the external values of tangential velocity in the relative + ! vorticity on open boundaries. This cannot be true if another OBC_XXX_VORTICITY + ! option is True. +OBC_SPECIFIED_VORTICITY = False ! [Boolean] default = False + ! If true, uses the external values of tangential velocity in the relative + ! vorticity on open boundaries. This cannot be true if another OBC_XXX_VORTICITY + ! option is True. +OBC_ZERO_STRAIN = False ! [Boolean] default = False + ! If true, sets the strain used in the stress tensor to zero on open boundaries. +OBC_FREESLIP_STRAIN = False ! [Boolean] default = True + ! If true, sets the normal gradient of tangential velocity to zero in the strain + ! use in the stress tensor on open boundaries. This cannot be true if another + ! OBC_XXX_STRAIN option is True. +OBC_COMPUTED_STRAIN = True ! [Boolean] default = False + ! If true, sets the normal gradient of tangential velocity to zero in the strain + ! use in the stress tensor on open boundaries. This cannot be true if another + ! OBC_XXX_STRAIN option is True. +OBC_SPECIFIED_STRAIN = False ! [Boolean] default = False + ! If true, sets the normal gradient of tangential velocity to zero in the strain + ! use in the stress tensor on open boundaries. This cannot be true if another + ! OBC_XXX_STRAIN option is True. +OBC_ZERO_BIHARMONIC = True ! [Boolean] default = False + ! If true, zeros the Laplacian of flow on open boundaries in the biharmonic + ! viscosity term. +MASK_OUTSIDE_OBCS = False ! [Boolean] default = False + ! If true, set the areas outside open boundaries to be land. +RAMP_OBCS = False ! [Boolean] default = False + ! If true, ramps from zero to the external values over time, witha ramping + ! timescale given by RAMP_TIMESCALE. Ramping SSH only so far +OBC_RAMP_TIMESCALE = 2.0 ! [days] default = 1.0 + ! If RAMP_OBCS is true, this sets the ramping timescale. +OBC_TIDE_N_CONSTITUENTS = 10 ! default = 0 + ! Number of tidal constituents being added to the open boundary. +OBC_SEGMENT_001 = "J=0,I=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! + ! Documentation needs to be dynamic????? +OBC_SEGMENT_001_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 + ! Timescales in days for nudging along a segment, for inflow, then outflow. + ! Setting both to zero should behave like SIMPLE obcs for the baroclinic + ! velocities. +OBC_SEGMENT_002 = "J=N,I=N:0,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! + ! Documentation needs to be dynamic????? +OBC_SEGMENT_002_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 + ! Timescales in days for nudging along a segment, for inflow, then outflow. + ! Setting both to zero should behave like SIMPLE obcs for the baroclinic + ! velocities. +OBC_SEGMENT_003 = "I=N,J=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! + ! Documentation needs to be dynamic????? +OBC_SEGMENT_003_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 + ! Timescales in days for nudging along a segment, for inflow, then outflow. + ! Setting both to zero should behave like SIMPLE obcs for the baroclinic + ! velocities. +OBC_RADIATION_MAX = 1.0 ! [nondim] default = 1.0 + ! The maximum magnitude of the baroclinic radiation velocity (or speed of + ! characteristics), in gridpoints per timestep. This is only used if one of the + ! open boundary segments is using Orlanski. +OBC_RAD_VEL_WT = 0.3 ! [nondim] default = 0.3 + ! The relative weighting for the baroclinic radiation velocities (or speed of + ! characteristics) at the new time level (1) or the running mean (0) for + ! velocities. Valid values range from 0 to 1. This is only used if one of the + ! open boundary segments is using Orlanski. +OBC_TRACER_RESERVOIR_LENGTH_SCALE_OUT = 9000.0 ! [m] default = 0.0 + ! An effective length scale for restoring the tracer concentration at the + ! boundaries to externally imposed values when the flow is exiting the domain. +OBC_TRACER_RESERVOIR_LENGTH_SCALE_IN = 9000.0 ! [m] default = 0.0 + ! An effective length scale for restoring the tracer concentration at the + ! boundaries to values from the interior when the flow is entering the domain. +BRUSHCUTTER_MODE = True ! [Boolean] default = False + ! If true, read external OBC data on the supergrid. +REMAPPING_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the expressions and order of arithmetic to use for remapping. + ! Values below 20190101 result in the use of older, less accurate expressions + ! that were in use at the end of 2018. Higher values result in the use of more + ! robust and accurate forms of mathematically equivalent expressions. +OBC_TIDE_CONSTITUENTS = "M2,S2,N2,K2,K1,O1,P1,Q1,MM,MF" ! + ! Names of tidal constituents being added to the open boundaries. +OBC_TIDE_ADD_EQ_PHASE = True ! [Boolean] default = False + ! If true, add the equilibrium phase argument to the specified tidal phases. +OBC_TIDE_ADD_NODAL = True ! [Boolean] default = False + ! If true, include 18.6 year nodal modulation in the boundary tidal forcing. +OBC_TIDE_REF_DATE = 1993, 1, 1 ! + ! Reference date to use for tidal calculations and equilibrium phase. +OBC_TIDE_NODAL_REF_DATE = 1993, 7, 2 ! default = 0 + ! Fixed reference date to use for nodal modulation of boundary tides. +TIDE_M2_FREQ = 1.405189E-04 ! [s-1] default = 1.405189E-04 + ! Frequency of the M2 tidal constituent. This is only used if TIDES and TIDE_M2 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and M2 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_S2_FREQ = 1.454441E-04 ! [s-1] default = 1.454441E-04 + ! Frequency of the S2 tidal constituent. This is only used if TIDES and TIDE_S2 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and S2 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_N2_FREQ = 1.378797E-04 ! [s-1] default = 1.378797E-04 + ! Frequency of the N2 tidal constituent. This is only used if TIDES and TIDE_N2 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and N2 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_K2_FREQ = 1.4584234E-04 ! [s-1] default = 1.4584234E-04 + ! Frequency of the K2 tidal constituent. This is only used if TIDES and TIDE_K2 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and K2 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_K1_FREQ = 7.292117E-05 ! [s-1] default = 7.292117E-05 + ! Frequency of the K1 tidal constituent. This is only used if TIDES and TIDE_K1 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and K1 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_O1_FREQ = 6.759774E-05 ! [s-1] default = 6.759774E-05 + ! Frequency of the O1 tidal constituent. This is only used if TIDES and TIDE_O1 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and O1 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_P1_FREQ = 7.252295E-05 ! [s-1] default = 7.252295E-05 + ! Frequency of the P1 tidal constituent. This is only used if TIDES and TIDE_P1 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and P1 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_Q1_FREQ = 6.495854E-05 ! [s-1] default = 6.495854E-05 + ! Frequency of the Q1 tidal constituent. This is only used if TIDES and TIDE_Q1 + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and Q1 is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_MM_FREQ = 2.6392E-06 ! [s-1] default = 2.6392E-06 + ! Frequency of the MM tidal constituent. This is only used if TIDES and TIDE_MM + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and MM is in + ! OBC_TIDE_CONSTITUENTS. +TIDE_MF_FREQ = 5.3234E-06 ! [s-1] default = 5.3234E-06 + ! Frequency of the MF tidal constituent. This is only used if TIDES and TIDE_MF + ! are true, or if OBC_TIDE_N_CONSTITUENTS > 0 and MF is in + ! OBC_TIDE_CONSTITUENTS. +CHANNEL_CONFIG = "none" ! default = "none" + ! A parameter that determines which set of channels are + ! restricted to specific widths. Options are: + ! none - All channels have the grid width. + ! global_1deg - Sets 16 specific channels appropriate + ! for a 1-degree model, as used in CM2G. + ! list - Read the channel locations and widths from a + ! text file, like MOM_channel_list in the MOM_SIS + ! test case. + ! file - Read open face widths everywhere from a + ! NetCDF file on the model grid. +SUBGRID_TOPO_AT_VEL = False ! [Boolean] default = False + ! If true, use variables from TOPO_AT_VEL_FILE as parameters for porous barrier. +ROTATION = "2omegasinlat" ! default = "2omegasinlat" + ! This specifies how the Coriolis parameter is specified: + ! 2omegasinlat - Use twice the planetary rotation rate + ! times the sine of latitude. + ! betaplane - Use a beta-plane or f-plane. + ! USER - call a user modified routine. +OMEGA = 7.2921E-05 ! [s-1] default = 7.2921E-05 + ! The rotation rate of the earth. +GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = False + ! If true, use an older algorithm to calculate the sine and cosines needed + ! rotate between grid-oriented directions and true north and east. Differences + ! arise at the tripolar fold. + +! === module MOM_verticalGrid === +! Parameters providing information about the vertical grid. +G_EARTH = 9.8 ! [m s-2] default = 9.8 + ! The gravitational acceleration of the Earth. +RHO_0 = 1035.0 ! [kg m-3] default = 1035.0 + ! The mean ocean density used with BOUSSINESQ true to calculate accelerations + ! and the mass for conservation properties, or with BOUSSINSEQ false to convert + ! some parameters from vertical units of m to kg m-2. +BOUSSINESQ = True ! [Boolean] default = True + ! If true, make the Boussinesq approximation. +ANGSTROM = 1.0E-10 ! [m] default = 1.0E-10 + ! The minimum layer thickness, usually one-Angstrom. +H_TO_M = 1.0 ! [m H-1] default = 1.0 + ! A constant that translates the model's internal units of thickness into m. +NK = 75 ! [nondim] + ! The number of model layers. + +! === module MOM_tracer_registry === + +! === module MOM_EOS === +EQN_OF_STATE = "WRIGHT_FULL" ! default = "WRIGHT" + ! EQN_OF_STATE determines which ocean equation of state should be used. + ! Currently, the valid choices are "LINEAR", "UNESCO", "JACKETT_MCD", "WRIGHT", + ! "WRIGHT_REDUCED", "WRIGHT_FULL", "NEMO", "ROQUET_RHO", "ROQUET_SPV" and + ! "TEOS10". This is only used if USE_EOS is true. +EOS_QUADRATURE = False ! [Boolean] default = False + ! If true, always use the generic (quadrature) code code for the integrals of + ! density. +TFREEZE_FORM = "LINEAR" ! default = "LINEAR" + ! TFREEZE_FORM determines which expression should be used for the freezing + ! point. Currently, the valid choices are "LINEAR", "MILLERO_78", "TEOS_POLY", + ! "TEOS10" +TFREEZE_S0_P0 = 0.0 ! [degC] default = 0.0 + ! When TFREEZE_FORM=LINEAR, this is the freezing potential temperature at S=0, + ! P=0. +DTFREEZE_DS = -0.054 ! [degC ppt-1] default = -0.054 + ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential + ! temperature with salinity. +DTFREEZE_DP = -7.75E-08 ! [degC Pa-1] default = 0.0 + ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential + ! temperature with pressure. + +! === module MOM_restart === +PARALLEL_RESTARTFILES = False ! [Boolean] default = False + ! If true, the IO layout is used to group processors that write to the same + ! restart file or each processor writes its own (numbered) restart file. If + ! false, a single restart file is generated combining output from all PEs. +RESTARTFILE = "MOM.res" ! default = "MOM.res" + ! The name-root of the restart file. +MAX_FIELDS = 500 ! default = 100 + ! The maximum number of restart fields that can be used. +RESTART_CHECKSUMS_REQUIRED = True ! [Boolean] default = True + ! If true, require the restart checksums to match and error out otherwise. Users + ! may want to avoid this comparison if for example the restarts are made from a + ! run with a different mask_table than the current run, in which case the + ! checksums will not match and cause crash. + +! === module MOM_tracer_flow_control === +USE_USER_TRACER_EXAMPLE = False ! [Boolean] default = False + ! If true, use the USER_tracer_example tracer package. +USE_DOME_TRACER = False ! [Boolean] default = False + ! If true, use the DOME_tracer tracer package. +USE_ISOMIP_TRACER = False ! [Boolean] default = False + ! If true, use the ISOMIP_tracer tracer package. +USE_RGC_TRACER = False ! [Boolean] default = False + ! If true, use the RGC_tracer tracer package. +USE_IDEAL_AGE_TRACER = False ! [Boolean] default = False + ! If true, use the ideal_age_example tracer package. +USE_REGIONAL_DYES = False ! [Boolean] default = False + ! If true, use the regional_dyes tracer package. +USE_OIL_TRACER = False ! [Boolean] default = False + ! If true, use the oil_tracer tracer package. +USE_ADVECTION_TEST_TRACER = False ! [Boolean] default = False + ! If true, use the advection_test_tracer tracer package. +USE_OCMIP2_CFC = False ! [Boolean] default = False + ! If true, use the MOM_OCMIP2_CFC tracer package. +USE_CFC_CAP = False ! [Boolean] default = False + ! If true, use the MOM_CFC_cap tracer package. +USE_generic_tracer = True ! [Boolean] default = False + ! If true and _USE_GENERIC_TRACER is defined as a preprocessor macro, use the + ! MOM_generic_tracer packages. +USE_PSEUDO_SALT_TRACER = False ! [Boolean] default = False + ! If true, use the pseudo salt tracer, typically run as a diagnostic. +USE_BOUNDARY_IMPULSE_TRACER = False ! [Boolean] default = False + ! If true, use the boundary impulse tracer. +USE_DYED_OBC_TRACER = False ! [Boolean] default = False + ! If true, use the dyed_obc_tracer tracer package. +USE_NW2_TRACERS = False ! [Boolean] default = False + ! If true, use the NeverWorld2 tracers. + +! === module register_MOM_generic_tracer === +GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc" ! default = "" + ! The file in which the generic tracer initial values can be found, or an empty + ! string for internal initialization. +GENERIC_TRACER_IC_FILE_IS_Z = False ! [Boolean] default = False + ! If true, GENERIC_TRACER_IC_FILE is in depth space, not layer space. +TRACERS_MAY_REINIT = False ! [Boolean] default = False + ! If true, tracers may go through the initialization code if they are not found + ! in the restart files. Otherwise it is a fatal error if tracers are not found + ! in the restart files of a restarted run. + +! === module MOM_boundary_update === +USE_FILE_OBC = False ! [Boolean] default = False + ! If true, use external files for the open boundary. +USE_TIDAL_BAY_OBC = False ! [Boolean] default = False + ! If true, use the tidal_bay open boundary. +USE_KELVIN_WAVE_OBC = False ! [Boolean] default = False + ! If true, use the Kelvin wave open boundary. +USE_SHELFWAVE_OBC = False ! [Boolean] default = False + ! If true, use the shelfwave open boundary. +USE_DYED_CHANNEL_OBC = False ! [Boolean] default = False + ! If true, use the dyed channel open boundary. + +! === module segment_tracer_registry_init === + +! === module MOM_coord_initialization === +COORD_CONFIG = "ALE" ! default = "none" + ! This specifies how layers are to be defined: + ! ALE or none - used to avoid defining layers in ALE mode + ! file - read coordinate information from the file + ! specified by (COORD_FILE). + ! BFB - Custom coords for buoyancy-forced basin case + ! based on SST_S, T_BOT and DRHO_DT. + ! linear - linear based on interfaces not layers + ! layer_ref - linear based on layer densities + ! ts_ref - use reference temperature and salinity + ! ts_range - use range of temperature and salinity + ! (T_REF and S_REF) to determine surface density + ! and GINT calculate internal densities. + ! gprime - use reference density (RHO_0) for surface + ! density and GINT calculate internal densities. + ! ts_profile - use temperature and salinity profiles + ! (read from COORD_FILE) to set layer densities. + ! USER - call a user modified routine. +GFS = 9.8 ! [m s-2] default = 9.8 + ! The reduced gravity at the free surface. +LIGHTEST_DENSITY = 1035.0 ! [kg m-3] default = 1035.0 + ! The reference potential density used for layer 1. +REGRIDDING_COORDINATE_MODE = "Z*" ! default = "LAYER" + ! Coordinate mode for vertical regridding. Choose among the following + ! possibilities: LAYER - Isopycnal or stacked shallow water layers + ! ZSTAR, Z* - stretched geopotential z* + ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf + ! SIGMA - terrain following coordinates + ! RHO - continuous isopycnal + ! HYCOM1 - HyCOM-like hybrid coordinate + ! HYBGEN - Hybrid coordinate from the Hycom hybgen code + ! ADAPTIVE - optimize for smooth neutral density surfaces +REGRIDDING_COORDINATE_UNITS = "m" ! default = "m" + ! Units of the regridding coordinate. +ALE_COORDINATE_CONFIG = "FILE:vgrid_75_2m.nc,dz" ! default = "UNIFORM" + ! Determines how to specify the coordinate resolution. Valid options are: + ! PARAM - use the vector-parameter ALE_RESOLUTION + ! UNIFORM[:N] - uniformly distributed + ! FILE:string - read from a file. The string specifies + ! the filename and variable name, separated + ! by a comma or space, e.g. FILE:lev.nc,dz + ! or FILE:lev.nc,interfaces=zw + ! WOA09[:N] - the WOA09 vertical grid (approximately) + ! FNC1:string - FNC1:dz_min,H_total,power,precision + ! HYBRID:string - read from a file. The string specifies + ! the filename and two variable names, separated + ! by a comma or space, for sigma-2 and dz. e.g. + ! HYBRID:vgrid.nc,sigma2,dz +!ALE_RESOLUTION = 4*2.0, 2*2.01, 2.02, 2.03, 2.05, 2.08, 2.11, 2.15, 2.2, 2.27, 2.34, 2.44, 2.55, 2.69, 2.85, 3.04, 3.27, 3.54, 3.85, 4.22, 4.66, 5.18, 5.79, 6.52, 7.37, 8.37, 9.55, 10.94, 12.57, 14.48, 16.72, 19.33, 22.36, 25.87, 29.91, 34.53, 39.79, 45.72, 52.37, 59.76, 67.89, 76.74, 86.29, 96.47, 107.2, 118.35, 129.81, 141.42, 153.01, 164.41, 175.47, 186.01, 195.9, 205.01, 213.27, 220.6, 226.99, 232.43, 236.96, 240.63, 243.52, 245.72, 247.33, 248.45, 249.18, 249.62, 249.86, 249.96, 249.99, 2*250.0 ! [m] + ! The distribution of vertical resolution for the target + ! grid used for Eulerian-like coordinates. For example, + ! in z-coordinate mode, the parameter is a list of level + ! thicknesses (in m). In sigma-coordinate mode, the list + ! is of non-dimensional fractions of the water column. +MIN_THICKNESS = 1.0E-06 ! [m] default = 0.001 + ! When regridding, this is the minimum layer thickness allowed. +REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" + ! This sets the reconstruction scheme used for vertical remapping for all + ! variables. It can be one of the following schemes: + ! PCM (1st-order accurate) + ! PLM (2nd-order accurate) + ! PLM_HYBGEN (2nd-order accurate) + ! PPM_H4 (3rd-order accurate) + ! PPM_IH4 (3rd-order accurate) + ! PPM_HYBGEN (3rd-order accurate) + ! WENO_HYBGEN (3rd-order accurate) + ! PQM_IH4IH3 (4th-order accurate) + ! PQM_IH6IH5 (5th-order accurate) +VELOCITY_REMAPPING_SCHEME = "PPM_H4" ! default = "PPM_H4" + ! This sets the reconstruction scheme used for vertical remapping of velocities. + ! By default it is the same as REMAPPING_SCHEME. It can be one of the following + ! schemes: + ! PCM (1st-order accurate) + ! PLM (2nd-order accurate) + ! PLM_HYBGEN (2nd-order accurate) + ! PPM_H4 (3rd-order accurate) + ! PPM_IH4 (3rd-order accurate) + ! PPM_HYBGEN (3rd-order accurate) + ! WENO_HYBGEN (3rd-order accurate) + ! PQM_IH4IH3 (4th-order accurate) + ! PQM_IH6IH5 (5th-order accurate) +FATAL_CHECK_RECONSTRUCTIONS = False ! [Boolean] default = False + ! If true, cell-by-cell reconstructions are checked for consistency and if + ! non-monotonicity or an inconsistency is detected then a FATAL error is issued. +FATAL_CHECK_REMAPPING = False ! [Boolean] default = False + ! If true, the results of remapping are checked for conservation and new extrema + ! and if an inconsistency is detected then a FATAL error is issued. +REMAP_BOUND_INTERMEDIATE_VALUES = False ! [Boolean] default = False + ! If true, the values on the intermediate grid used for remapping are forced to + ! be bounded, which might not be the case due to round off. +REMAP_BOUNDARY_EXTRAP = False ! [Boolean] default = False + ! If true, values at the interfaces of boundary cells are extrapolated instead + ! of piecewise constant +PARTIAL_CELL_VELOCITY_REMAP = False ! [Boolean] default = False + ! If true, use partial cell thicknesses at velocity points that are masked out + ! where they extend below the shallower of the neighboring bathymetry for + ! remapping velocity. +REMAP_AFTER_INITIALIZATION = True ! [Boolean] default = True + ! If true, applies regridding and remapping immediately after initialization so + ! that the state is ALE consistent. This is a legacy step and should not be + ! needed if the initialization is consistent with the coordinate mode. +REGRID_TIME_SCALE = 0.0 ! [s] default = 0.0 + ! The time-scale used in blending between the current (old) grid and the target + ! (new) grid. A short time-scale favors the target grid (0. or anything less + ! than DT_THERM) has no memory of the old grid. A very long time-scale makes the + ! model more Lagrangian. +REGRID_FILTER_SHALLOW_DEPTH = 0.0 ! [m] default = 0.0 + ! The depth above which no time-filtering is applied. Above this depth final + ! grid exactly matches the target (new) grid. +REGRID_FILTER_DEEP_DEPTH = 0.0 ! [m] default = 0.0 + ! The depth below which full time-filtering is applied with time-scale + ! REGRID_TIME_SCALE. Between depths REGRID_FILTER_SHALLOW_DEPTH and + ! REGRID_FILTER_SHALLOW_DEPTH the filter weights adopt a cubic profile. +REMAP_VEL_MASK_BBL_THICK = -0.001 ! [m] default = -0.001 + ! A thickness of a bottom boundary layer below which velocities in thin layers + ! are zeroed out after remapping, following practice with Hybgen remapping, or a + ! negative value to avoid such filtering altogether. + +! === module MOM_state_initialization === +FATAL_INCONSISTENT_RESTART_TIME = False ! [Boolean] default = False + ! If true and a time_in value is provided to MOM_initialize_state, verify that + ! the time read from a restart file is the same as time_in, and issue a fatal + ! error if it is not. Otherwise, simply set the time to time_in if present. +U_IC_VAR = "u" ! default = "u" + ! The initial condition variable for zonal velocity in VELOCITY_FILE. +V_IC_VAR = "v" ! default = "v" + ! The initial condition variable for meridional velocity in VELOCITY_FILE. +ODA_INCUPD = False ! [Boolean] default = False + ! If true, oda incremental updates will be applied everywhere in the domain. +SPONGE = False ! [Boolean] default = False + ! If true, sponges may be applied anywhere in the domain. The exact location and + ! properties of those sponges are specified via SPONGE_CONFIG. +OBC_SEGMENT_001_DATA = "U=file:uv_001.nc(u),V=file:uv_001.nc(v),SSH=file:zos_001.nc(zos),TEMP=file:thetao_001.nc(thetao),SALT=file:so_001.nc(so),Uamp=file:tu_001.nc(uamp),Uphase=file:tu_001.nc(uphase),Vamp=file:tu_001.nc(vamp),Vphase=file:tu_001.nc(vphase),SSHamp=file:tz_001.nc(zamp),SSHphase=file:tz_001.nc(zphase)" ! + ! OBC segment docs +OBC_SEGMENT_002_DATA = "U=file:uv_002.nc(u),V=file:uv_002.nc(v),SSH=file:zos_002.nc(zos),TEMP=file:thetao_002.nc(thetao),SALT=file:so_002.nc(so),Uamp=file:tu_002.nc(uamp),Uphase=file:tu_002.nc(uphase),Vamp=file:tu_002.nc(vamp),Vphase=file:tu_002.nc(vphase),SSHamp=file:tz_002.nc(zamp),SSHphase=file:tz_002.nc(zphase)" ! + ! OBC segment docs +OBC_SEGMENT_003_DATA = "U=file:uv_003.nc(u),V=file:uv_003.nc(v),SSH=file:zos_003.nc(zos),TEMP=file:thetao_003.nc(thetao),SALT=file:so_003.nc(so),Uamp=file:tu_003.nc(uamp),Uphase=file:tu_003.nc(uphase),Vamp=file:tu_003.nc(vamp),Vphase=file:tu_003.nc(vphase),SSHamp=file:tz_003.nc(zamp),SSHphase=file:tz_003.nc(zphase)" ! + ! OBC segment docs +OBC_USER_CONFIG = "none" ! default = "none" + ! A string that sets how the user code is invoked to set open boundary data: + ! DOME - specified inflow on northern boundary + ! dyed_channel - supercritical with dye on the inflow boundary + ! dyed_obcs - circle_obcs with dyes on the open boundaries + ! Kelvin - barotropic Kelvin wave forcing on the western boundary + ! shelfwave - Flather with shelf wave forcing on western boundary + ! supercritical - now only needed here for the allocations + ! tidal_bay - Flather with tidal forcing on eastern boundary + ! USER - user specified + +! === module MOM_diag_mediator === +NUM_DIAG_COORDS = 1 ! default = 1 + ! The number of diagnostic vertical coordinates to use. For each coordinate, an + ! entry in DIAG_COORDS must be provided. +USE_GRID_SPACE_DIAGNOSTIC_AXES = False ! [Boolean] default = False + ! If true, use a grid index coordinate convention for diagnostic axes. +DIAG_COORDS = "z Z ZSTAR" ! default = "z Z ZSTAR" + ! A list of string tuples associating diag_table modules to a coordinate + ! definition used for diagnostics. Each string is of the form "MODULE_SUFFIX + ! PARAMETER_SUFFIX COORDINATE_NAME". +DIAG_MISVAL = 1.0E+20 ! [various] default = 1.0E+20 + ! Set the default missing value to use for diagnostics. +DIAG_AS_CHKSUM = False ! [Boolean] default = False + ! Instead of writing diagnostics to the diag manager, write a text file + ! containing the checksum (bitcount) of the array. +AVAILABLE_DIAGS_FILE = "available_diags.000000" ! default = "available_diags.000000" + ! A file into which to write a list of all available ocean diagnostics that can + ! be included in a diag_table. +DIAG_COORD_DEF_Z = "FILE:diag_dz.nc,dz" ! default = "WOA09" + ! Determines how to specify the coordinate resolution. Valid options are: + ! PARAM - use the vector-parameter DIAG_COORD_RES_Z + ! UNIFORM[:N] - uniformly distributed + ! FILE:string - read from a file. The string specifies + ! the filename and variable name, separated + ! by a comma or space, e.g. FILE:lev.nc,dz + ! or FILE:lev.nc,interfaces=zw + ! WOA09[:N] - the WOA09 vertical grid (approximately) + ! FNC1:string - FNC1:dz_min,H_total,power,precision + ! HYBRID:string - read from a file. The string specifies + ! the filename and two variable names, separated + ! by a comma or space, for sigma-2 and dz. e.g. + ! HYBRID:vgrid.nc,sigma2,dz + +! === module MOM_MEKE === +USE_MEKE = False ! [Boolean] default = False + ! If true, turns on the MEKE scheme which calculates a sub-grid mesoscale eddy + ! kinetic energy budget. + +! === module MOM_lateral_mixing_coeffs === +USE_VARIABLE_MIXING = True ! [Boolean] default = False + ! If true, the variable mixing code will be called. This allows diagnostics to + ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or + ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter + ! file. +USE_VISBECK = False ! [Boolean] default = False + ! If true, use the Visbeck et al. (1997) formulation for + ! thickness diffusivity. +RESOLN_SCALED_KH = False ! [Boolean] default = False + ! If true, the Laplacian lateral viscosity is scaled away when the first + ! baroclinic deformation radius is well resolved. +DEPTH_SCALED_KHTH = False ! [Boolean] default = False + ! If true, KHTH is scaled away when the depth is shallowerthan a reference + ! depth: KHTH = MIN(1,H/H0)**N * KHTH, where H0 is a reference depth, controlled + ! via DEPTH_SCALED_KHTH_H0, and the exponent (N) is controlled via + ! DEPTH_SCALED_KHTH_EXP. +RESOLN_SCALED_KHTH = False ! [Boolean] default = False + ! If true, the interface depth diffusivity is scaled away when the first + ! baroclinic deformation radius is well resolved. +RESOLN_SCALED_KHTR = False ! [Boolean] default = False + ! If true, the epipycnal tracer diffusivity is scaled away when the first + ! baroclinic deformation radius is well resolved. +RESOLN_USE_EBT = False ! [Boolean] default = False + ! If true, uses the equivalent barotropic wave speed instead of first baroclinic + ! wave for calculating the resolution fn. +KHTH_USE_EBT_STRUCT = False ! [Boolean] default = False + ! If true, uses the equivalent barotropic structure as the vertical structure of + ! thickness diffusivity. +KD_GL90_USE_EBT_STRUCT = False ! [Boolean] default = False + ! If true, uses the equivalent barotropic structure as the vertical structure of + ! diffusivity in the GL90 scheme. +KHTH_SLOPE_CFF = 0.0 ! [nondim] default = 0.0 + ! The nondimensional coefficient in the Visbeck formula for the interface depth + ! diffusivity +KHTR_SLOPE_CFF = 0.0 ! [nondim] default = 0.0 + ! The nondimensional coefficient in the Visbeck formula for the epipycnal tracer + ! diffusivity +USE_STORED_SLOPES = True ! [Boolean] default = False + ! If true, the isopycnal slopes are calculated once and stored for re-use. This + ! uses more memory but avoids calling the equation of state more times than + ! should be necessary. +VERY_SMALL_FREQUENCY = 1.0E-17 ! [s-1] default = 1.0E-17 + ! A miniscule frequency that is used to avoid division by 0. The default value + ! is roughly (pi / (the age of the universe)). +USE_STANLEY_ISO = False ! [Boolean] default = False + ! If true, turn on Stanley SGS T variance parameterization in isopycnal slope + ! code. +KD_SMOOTH = 1.0E-06 ! [m2 s-1] default = 1.0E-06 + ! A diapycnal diffusivity that is used to interpolate more sensible values of T + ! & S into thin layers. +INTERNAL_WAVE_SPEED_TOL = 0.001 ! [nondim] default = 0.001 + ! The fractional tolerance for finding the wave speeds. +INTERNAL_WAVE_SPEED_MIN = 0.0 ! [m s-1] default = 0.0 + ! A floor in the first mode speed below which 0 used instead. +INTERNAL_WAVE_SPEED_BETTER_EST = True ! [Boolean] default = True + ! If true, use a more robust estimate of the first mode wave speed as the + ! starting point for iterations. +USE_QG_LEITH_GM = False ! [Boolean] default = False + ! If true, use the QG Leith viscosity as the GM coefficient. + +! === module MOM_set_visc === +SET_VISC_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the set viscosity + ! calculations. Values below 20190101 recover the answers from the end of 2018, + ! while higher values use updated and more robust forms of the same expressions. +BOTTOMDRAGLAW = True ! [Boolean] default = True + ! If true, the bottom stress is calculated with a drag law of the form + ! c_drag*|u|*u. The velocity magnitude may be an assumed value or it may be + ! based on the actual velocity in the bottommost HBBL, depending on LINEAR_DRAG. +DRAG_AS_BODY_FORCE = False ! [Boolean] default = False + ! If true, the bottom stress is imposed as an explicit body force applied over a + ! fixed distance from the bottom, rather than as an implicit calculation based + ! on an enhanced near-bottom viscosity. The thickness of the bottom boundary + ! layer is HBBL. +CHANNEL_DRAG = True ! [Boolean] default = False + ! If true, the bottom drag is exerted directly on each layer proportional to the + ! fraction of the bottom it overlies. +LINEAR_DRAG = False ! [Boolean] default = False + ! If LINEAR_DRAG and BOTTOMDRAGLAW are defined the drag law is + ! cdrag*DRAG_BG_VEL*u. +PRANDTL_TURB = 1.25 ! [nondim] default = 1.0 + ! The turbulent Prandtl number applied to shear instability. +DYNAMIC_VISCOUS_ML = False ! [Boolean] default = False + ! If true, use a bulk Richardson number criterion to determine the mixed layer + ! thickness for viscosity. +HBBL = 10.0 ! [m] + ! The thickness of a bottom boundary layer with a viscosity increased by + ! KV_EXTRA_BBL if BOTTOMDRAGLAW is not defined, or the thickness over which + ! near-bottom velocities are averaged for the drag law if BOTTOMDRAGLAW is + ! defined but LINEAR_DRAG is not. +CDRAG = 0.003 ! [nondim] default = 0.003 + ! CDRAG is the drag coefficient relating the magnitude of the velocity field to + ! the bottom stress. CDRAG is only used if BOTTOMDRAGLAW is defined. +BBL_USE_TIDAL_BG = False ! [Boolean] default = False + ! Flag to use the tidal RMS amplitude in place of constant background velocity + ! for computing u* in the BBL. This flag is only used when BOTTOMDRAGLAW is true + ! and LINEAR_DRAG is false. +DRAG_BG_VEL = 0.0 ! [m s-1] default = 0.0 + ! DRAG_BG_VEL is either the assumed bottom velocity (with LINEAR_DRAG) or an + ! unresolved velocity that is combined with the resolved velocity to estimate + ! the velocity magnitude. DRAG_BG_VEL is only used when BOTTOMDRAGLAW is + ! defined. +BBL_USE_EOS = True ! [Boolean] default = True + ! If true, use the equation of state in determining the properties of the bottom + ! boundary layer. Otherwise use the layer target potential densities. The + ! default of this parameter is the value of USE_EOS. +BBL_THICK_MIN = 0.1 ! [m] default = 0.0 + ! The minimum bottom boundary layer thickness that can be used with + ! BOTTOMDRAGLAW. This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum + ! near-bottom viscosity. +HTBL_SHELF_MIN = 0.1 ! [m] default = 0.1 + ! The minimum top boundary layer thickness that can be used with BOTTOMDRAGLAW. + ! This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum near-top + ! viscosity. +HTBL_SHELF = 10.0 ! [m] default = 10.0 + ! The thickness over which near-surface velocities are averaged for the drag law + ! under an ice shelf. By default this is the same as HBBL +KV = 1.0E-06 ! [m2 s-1] + ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 + ! m2 s-1, may be used. +KV_BBL_MIN = 1.0E-06 ! [m2 s-1] default = 1.0E-06 + ! The minimum viscosities in the bottom boundary layer. +KV_TBL_MIN = 1.0E-06 ! [m2 s-1] default = 1.0E-06 + ! The minimum viscosities in the top boundary layer. +CORRECT_BBL_BOUNDS = False ! [Boolean] default = False + ! If true, uses the correct bounds on the BBL thickness and viscosity so that + ! the bottom layer feels the intended drag. +SMAG_CONST_CHANNEL = 0.05 ! [nondim] default = 0.05 + ! The nondimensional Laplacian Smagorinsky constant used in calculating the + ! channel drag if it is enabled. The default is to use the same value as + ! SMAG_LAP_CONST if it is defined, or 0.15 if it is not. The value used is also + ! 0.15 if the specified value is negative. +TRIG_CHANNEL_DRAG_WIDTHS = True ! [Boolean] default = True + ! If true, use trigonometric expressions to determine the fractional open + ! interface lengths for concave topography. +CHANNEL_DRAG_MAX_BBL_THICK = 5.0 ! [m] default = 5.0 + ! The maximum bottom boundary layer thickness over which the channel drag is + ! exerted, or a negative value for no fixed limit, instead basing the BBL + ! thickness on the bottom stress, rotation and stratification. The default is + ! proportional to HBBL if USE_JACKSON_PARAM or DRAG_AS_BODY_FORCE is true. + +! === module MOM_thickness_diffuse === +KHTH = 0.0 ! [m2 s-1] default = 0.0 + ! The background horizontal thickness diffusivity. +READ_KHTH = False ! [Boolean] default = False + ! If true, read a file (given by KHTH_FILE) containing the spatially varying + ! horizontal isopycnal height diffusivity. +KHTH_MIN = 0.0 ! [m2 s-1] default = 0.0 + ! The minimum horizontal thickness diffusivity. +KHTH_MAX = 0.0 ! [m2 s-1] default = 0.0 + ! The maximum horizontal thickness diffusivity. +KHTH_MAX_CFL = 0.1 ! [nondimensional] default = 0.8 + ! The maximum value of the local diffusive CFL ratio that is permitted for the + ! thickness diffusivity. 1.0 is the marginally unstable value in a pure layered + ! model, but much smaller numbers (e.g. 0.1) seem to work better for ALE-based + ! models. +KH_ETA_CONST = 0.0 ! [m2 s-1] default = 0.0 + ! The background horizontal diffusivity of the interface heights (without + ! considering the layer density structure). If diffusive CFL limits are + ! encountered, the diffusivities of the isopycnals and the interfaces heights + ! are scaled back proportionately. +KH_ETA_VEL_SCALE = 0.0 ! [m s-1] default = 0.0 + ! A velocity scale that is multiplied by the grid spacing to give a contribution + ! to the horizontal diffusivity of the interface heights (without considering + ! the layer density structure). +DETANGLE_INTERFACES = False ! [Boolean] default = False + ! If defined add 3-d structured enhanced interface height diffusivities to + ! horizontally smooth jagged layers. +KHTH_SLOPE_MAX = 0.01 ! [nondim] default = 0.01 + ! A slope beyond which the calculated isopycnal slope is not reliable and is + ! scaled away. +KHTH_USE_FGNV_STREAMFUNCTION = False ! [Boolean] default = False + ! If true, use the streamfunction formulation of Ferrari et al., 2010, which + ! effectively emphasizes graver vertical modes by smoothing in the vertical. +USE_STANLEY_GM = False ! [Boolean] default = False + ! If true, turn on Stanley SGS T variance parameterization in GM code. +MEKE_GM_SRC_ALT = False ! [Boolean] default = False + ! If true, use the GM energy conversion form S^2*N^2*kappa rather than the + ! streamfunction for the GM source term. +MEKE_GEOMETRIC = False ! [Boolean] default = False + ! If true, uses the GM coefficient formulation from the GEOMETRIC framework + ! (Marshall et al., 2012). +USE_KH_IN_MEKE = False ! [Boolean] default = False + ! If true, uses the thickness diffusivity calculated here to diffuse MEKE. +USE_GME = False ! [Boolean] default = False + ! If true, use the GM+E backscatter scheme in association with the Gent and + ! McWilliams parameterization. +USE_GM_WORK_BUG = False ! [Boolean] default = False + ! If true, compute the top-layer work tendency on the u-grid with the incorrect + ! sign, for legacy reproducibility. +STOCH_EOS = False ! [Boolean] default = False + ! If true, stochastic perturbations are applied to the EOS in the PGF. +STANLEY_COEFF = -1.0 ! [nondim] default = -1.0 + ! Coefficient correlating the temperature gradient and SGS T variance. + +! === module MOM_porous_barriers === +PORBAR_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the porous barrier weight function calculations. Values below + ! 20220806 recover the old answers in which the layer averaged weights are not + ! strictly limited by an upper-bound of 1.0 . +PORBAR_MASKING_DEPTH = 0.0 ! [m] default = 0.0 + ! If the effective average depth at the velocity cell is shallower than this + ! number, then porous barrier is not applied at that location. + ! PORBAR_MASKING_DEPTH is assumed to be positive below the sea surface. +PORBAR_ETA_INTERP = "MAX" ! default = "MAX" + ! A string describing the method that decides how the interface heights at the + ! velocity points are calculated. Valid values are: + ! MAX (the default) - maximum of the adjacent cells + ! MIN - minimum of the adjacent cells + ! ARITHMETIC - arithmetic mean of the adjacent cells + ! HARMONIC - harmonic mean of the adjacent cells + +! === module MOM_dynamics_split_RK2 === +TIDES = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing. +CALCULATE_SAL = True ! [Boolean] default = True + ! If true, calculate self-attraction and loading. +BE = 0.6 ! [nondim] default = 0.6 + ! If SPLIT is true, BE determines the relative weighting of a 2nd-order + ! Runga-Kutta baroclinic time stepping scheme (0.5) and a backward Euler scheme + ! (1) that is used for the Coriolis and inertial terms. BE may be from 0.5 to + ! 1, but instability may occur near 0.5. BE is also applicable if SPLIT is false + ! and USE_RK2 is true. +BEGW = 0.0 ! [nondim] default = 0.0 + ! If SPLIT is true, BEGW is a number from 0 to 1 that controls the extent to + ! which the treatment of gravity waves is forward-backward (0) or simulated + ! backward Euler (1). 0 is almost always used. If SPLIT is false and USE_RK2 is + ! true, BEGW can be between 0 and 0.5 to damp gravity waves. +SPLIT_BOTTOM_STRESS = False ! [Boolean] default = False + ! If true, provide the bottom stress calculated by the vertical viscosity to the + ! barotropic solver. +BT_USE_LAYER_FLUXES = True ! [Boolean] default = True + ! If true, use the summed layered fluxes plus an adjustment due to the change in + ! the barotropic velocity in the barotropic continuity equation. +STORE_CORIOLIS_ACCEL = True ! [Boolean] default = True + ! If true, calculate the Coriolis accelerations at the end of each timestep for + ! use in the predictor step of the next split RK2 timestep. +FPMIX = False ! [Boolean] default = False + ! If true, apply profiles of momentum flux magnitude and direction + +! === module MOM_continuity_PPM === +MONOTONIC_CONTINUITY = False ! [Boolean] default = False + ! If true, CONTINUITY_PPM uses the Colella and Woodward monotonic limiter. The + ! default (false) is to use a simple positive definite limiter. +SIMPLE_2ND_PPM_CONTINUITY = False ! [Boolean] default = False + ! If true, CONTINUITY_PPM uses a simple 2nd order (arithmetic mean) + ! interpolation of the edge values. This may give better PV conservation + ! properties. While it formally reduces the accuracy of the continuity solver + ! itself in the strongly advective limit, it does not reduce the overall order + ! of accuracy of the dynamic core. +UPWIND_1ST_CONTINUITY = False ! [Boolean] default = False + ! If true, CONTINUITY_PPM becomes a 1st-order upwind continuity solver. This + ! scheme is highly diffusive but may be useful for debugging or in single-column + ! mode where its minimal stencil is useful. +ETA_TOLERANCE = 3.75E-09 ! [m] default = 3.75E-09 + ! The tolerance for the differences between the barotropic and baroclinic + ! estimates of the sea surface height due to the fluxes through each face. The + ! total tolerance for SSH is 4 times this value. The default is + ! 0.5*NK*ANGSTROM, and this should not be set less than about + ! 10^-15*MAXIMUM_DEPTH. +VELOCITY_TOLERANCE = 3.0E+08 ! [m s-1] default = 3.0E+08 + ! The tolerance for barotropic velocity discrepancies between the barotropic + ! solution and the sum of the layer thicknesses. +CONT_PPM_AGGRESS_ADJUST = False ! [Boolean] default = False + ! If true, allow the adjusted velocities to have a relative CFL change up to + ! 0.5. +CONT_PPM_VOLUME_BASED_CFL = False ! [Boolean] default = False + ! If true, use the ratio of the open face lengths to the tracer cell areas when + ! estimating CFL numbers. The default is set by CONT_PPM_AGGRESS_ADJUST. +CONTINUITY_CFL_LIMIT = 0.5 ! [nondim] default = 0.5 + ! The maximum CFL of the adjusted velocities. +CONT_PPM_BETTER_ITER = True ! [Boolean] default = True + ! If true, stop corrective iterations using a velocity based criterion and only + ! stop if the iteration is better than all predecessors. +CONT_PPM_USE_VISC_REM_MAX = True ! [Boolean] default = True + ! If true, use more appropriate limiting bounds for corrections in strongly + ! viscous columns. +CONT_PPM_MARGINAL_FACE_AREAS = True ! [Boolean] default = True + ! If true, use the marginal face areas from the continuity solver for use as the + ! weights in the barotropic solver. Otherwise use the transport averaged areas. + +! === module MOM_CoriolisAdv === +NOSLIP = False ! [Boolean] default = False + ! If true, no slip boundary conditions are used; otherwise free slip boundary + ! conditions are assumed. The implementation of the free slip BCs on a C-grid is + ! much cleaner than the no slip BCs. The use of free slip BCs is strongly + ! encouraged, and no slip BCs are not used with the biharmonic viscosity. +CORIOLIS_EN_DIS = True ! [Boolean] default = False + ! If true, two estimates of the thickness fluxes are used to estimate the + ! Coriolis term, and the one that dissipates energy relative to the other one is + ! used. +CORIOLIS_SCHEME = "SADOURNY75_ENERGY" ! default = "SADOURNY75_ENERGY" + ! CORIOLIS_SCHEME selects the discretization for the Coriolis terms. Valid + ! values are: + ! SADOURNY75_ENERGY - Sadourny, 1975; energy cons. + ! ARAKAWA_HSU90 - Arakawa & Hsu, 1990 + ! SADOURNY75_ENSTRO - Sadourny, 1975; enstrophy cons. + ! ARAKAWA_LAMB81 - Arakawa & Lamb, 1981; En. + Enst. + ! ARAKAWA_LAMB_BLEND - A blend of Arakawa & Lamb with + ! Arakawa & Hsu and Sadourny energy +BOUND_CORIOLIS = False ! [Boolean] default = False + ! If true, the Coriolis terms at u-points are bounded by the four estimates of + ! (f+rv)v from the four neighboring v-points, and similarly at v-points. This + ! option is always effectively false with CORIOLIS_EN_DIS defined and + ! CORIOLIS_SCHEME set to SADOURNY75_ENERGY. +KE_SCHEME = "KE_ARAKAWA" ! default = "KE_ARAKAWA" + ! KE_SCHEME selects the discretization for acceleration due to the kinetic + ! energy gradient. Valid values are: + ! KE_ARAKAWA, KE_SIMPLE_GUDONOV, KE_GUDONOV +PV_ADV_SCHEME = "PV_ADV_CENTERED" ! default = "PV_ADV_CENTERED" + ! PV_ADV_SCHEME selects the discretization for PV advection. Valid values are: + ! PV_ADV_CENTERED - centered (aka Sadourny, 75) + ! PV_ADV_UPWIND1 - upwind, first order + +! === module MOM_self_attr_load === +SAL_SCALAR_APPROX = True ! [Boolean] default = True + ! If true, use the scalar approximation to calculate self-attraction and + ! loading. +SAL_SCALAR_VALUE = 0.01 ! [m m-1] default = 0.01 + ! The constant of proportionality between sea surface height (really it should + ! be bottom pressure) anomalies and bottom geopotential anomalies. This is only + ! used if USE_SAL_SCALAR is true or USE_PREVIOUS_TIDES is true. +SAL_HARMONICS = False ! [Boolean] default = False + ! If true, use the online spherical harmonics method to calculate + ! self-attraction and loading. + +! === module MOM_tidal_forcing === +TIDE_M2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the M2 frequency. This is only used + ! if TIDES is true. +TIDE_S2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the S2 frequency. This is only used + ! if TIDES is true. +TIDE_N2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the N2 frequency. This is only used + ! if TIDES is true. +TIDE_K2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the K2 frequency. This is only used + ! if TIDES is true. +TIDE_K1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the K1 frequency. This is only used + ! if TIDES is true. +TIDE_O1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the O1 frequency. This is only used + ! if TIDES is true. +TIDE_P1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the P1 frequency. This is only used + ! if TIDES is true. +TIDE_Q1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the Q1 frequency. This is only used + ! if TIDES is true. +TIDE_MF = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the MF frequency. This is only used + ! if TIDES is true. +TIDE_MM = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the MM frequency. This is only used + ! if TIDES is true. +TIDAL_SAL_FROM_FILE = False ! [Boolean] default = False + ! If true, read the tidal self-attraction and loading from input files, + ! specified by TIDAL_INPUT_FILE. This is only used if TIDES is true. +USE_PREVIOUS_TIDES = False ! [Boolean] default = False + ! If true, use the SAL from the previous iteration of the tides to facilitate + ! convergent iteration. This is only used if TIDES is true. +TIDE_REF_DATE = 1993, 1, 1 ! default = 0 + ! Year,month,day to use as reference date for tidal forcing. If not specified, + ! defaults to 0. +TIDE_USE_EQ_PHASE = True ! [Boolean] default = False + ! Correct phases by calculating equilibrium phase arguments for TIDE_REF_DATE. +TIDE_M2_AMP = 0.242334 ! [m] default = 0.242334 + ! Amplitude of the M2 tidal constituent. This is only used if TIDES and TIDE_M2 + ! are true. +TIDE_M2_PHASE_T0 = 9.347582645568489 ! [radians] default = 9.347582645568489 + ! Phase of the M2 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_M2 are true. +TIDE_S2_AMP = 0.112743 ! [m] default = 0.112743 + ! Amplitude of the S2 tidal constituent. This is only used if TIDES and TIDE_S2 + ! are true. +TIDE_S2_PHASE_T0 = 0.0 ! [radians] default = 0.0 + ! Phase of the S2 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_S2 are true. +TIDE_N2_AMP = 0.046397 ! [m] default = 0.046397 + ! Amplitude of the N2 tidal constituent. This is only used if TIDES and TIDE_N2 + ! are true. +TIDE_N2_PHASE_T0 = 11.890182671016415 ! [radians] default = 11.890182671016415 + ! Phase of the N2 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_N2 are true. +TIDE_K2_AMP = 0.030684 ! [m] default = 0.030684 + ! Amplitude of the K2 tidal constituent. This is only used if TIDES and TIDE_K2 + ! are true. +TIDE_K2_PHASE_T0 = 9.79682726018515 ! [radians] default = 9.79682726018515 + ! Phase of the K2 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_K2 are true. +TIDE_K1_AMP = 0.141565 ! [m] default = 0.141565 + ! Amplitude of the K1 tidal constituent. This is only used if TIDES and TIDE_K1 + ! are true. +TIDE_K1_PHASE_T0 = 6.469209956887472 ! [radians] default = 6.469209956887472 + ! Phase of the K1 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_K1 are true. +TIDE_O1_AMP = 0.100661 ! [m] default = 0.100661 + ! Amplitude of the O1 tidal constituent. This is only used if TIDES and TIDE_O1 + ! are true. +TIDE_O1_PHASE_T0 = 2.878372688681016 ! [radians] default = 2.878372688681016 + ! Phase of the O1 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_O1 are true. +TIDE_P1_AMP = 0.046848 ! [m] default = 0.046848 + ! Amplitude of the P1 tidal constituent. This is only used if TIDES and TIDE_P1 + ! are true. +TIDE_P1_PHASE_T0 = -6.469209956887472 ! [radians] default = -6.469209956887472 + ! Phase of the P1 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_P1 are true. +TIDE_Q1_AMP = 0.019273 ! [m] default = 0.019273 + ! Amplitude of the Q1 tidal constituent. This is only used if TIDES and TIDE_Q1 + ! are true. +TIDE_Q1_PHASE_T0 = 5.420972714128944 ! [radians] default = 5.420972714128944 + ! Phase of the Q1 tidal constituent at time 0. This is only used if TIDES and + ! TIDE_Q1 are true. +TIDE_MF_AMP = 0.042041 ! [m] default = 0.042041 + ! Amplitude of the MF tidal constituent. This is only used if TIDES and TIDE_MF + ! are true. +TIDE_MF_PHASE_T0 = 0.4492446146166624 ! [radians] default = 0.4492446146166624 + ! Phase of the MF tidal constituent at time 0. This is only used if TIDES and + ! TIDE_MF are true. +TIDE_MM_AMP = 0.022191 ! [m] default = 0.022191 + ! Amplitude of the MM tidal constituent. This is only used if TIDES and TIDE_MM + ! are true. +TIDE_MM_PHASE_T0 = -2.542600025447928 ! [radians] default = -2.542600025447928 + ! Phase of the MM tidal constituent at time 0. This is only used if TIDES and + ! TIDE_MM are true. + +! === module MOM_PressureForce === +ANALYTIC_FV_PGF = True ! [Boolean] default = True + ! If true the pressure gradient forces are calculated with a finite volume form + ! that analytically integrates the equations of state in pressure to avoid any + ! possibility of numerical thermobaric instability, as described in Adcroft et + ! al., O. Mod. (2008). + +! === module MOM_PressureForce_FV === +RHO_PGF_REF = 1035.0 ! [kg m-3] default = 1035.0 + ! The reference density that is subtracted off when calculating pressure + ! gradient forces. Its inverse is subtracted off of specific volumes when in + ! non-Boussinesq mode. The default is RHO_0. +TIDES_ANSWER_DATE = 20230630 ! default = 20230630 + ! The vintage of self-attraction and loading (SAL) and tidal forcing + ! calculations in Boussinesq mode. Values below 20230701 recover the old answers + ! in which the SAL is part of the tidal forcing calculation. The change is due + ! to a reordered summation and the difference is only at bit level. +MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False + ! If true, use mass weighting when interpolating T/S for integrals near the + ! bathymetry in FV pressure gradient calculations. +USE_INACCURATE_PGF_RHO_ANOM = False ! [Boolean] default = False + ! If true, use a form of the PGF that uses the reference density in an + ! inaccurate way. This is not recommended. +RECONSTRUCT_FOR_PRESSURE = True ! [Boolean] default = True + ! If True, use vertical reconstruction of T & S within the integrals of the FV + ! pressure gradient calculation. If False, use the constant-by-layer algorithm. + ! The default is set by USE_REGRIDDING. +PRESSURE_RECONSTRUCTION_SCHEME = 1 ! default = 1 + ! Order of vertical reconstruction of T/S to use in the integrals within the FV + ! pressure gradient calculation. + ! 0: PCM or no reconstruction. + ! 1: PLM reconstruction. + ! 2: PPM reconstruction. +BOUNDARY_EXTRAPOLATION_PRESSURE = True ! [Boolean] default = True + ! If true, the reconstruction of T & S for pressure in boundary cells is + ! extrapolated, rather than using PCM in these cells. If true, the same order + ! polynomial is used as is used for the interior cells. +USE_STANLEY_PGF = False ! [Boolean] default = False + ! If true, turn on Stanley SGS T variance parameterization in PGF code. + +! === module MOM_Zanna_Bolton === +USE_ZB2020 = False ! [Boolean] default = False + ! If true, turns on Zanna-Bolton-2020 (ZB) subgrid momentum parameterization of + ! mesoscale eddies. + +! === module MOM_hor_visc === +HOR_VISC_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the horizontal + ! viscosity calculations. Values below 20190101 recover the answers from the + ! end of 2018, while higher values use updated and more robust forms of the same + ! expressions. +USE_CONT_THICKNESS = False ! [Boolean] default = False + ! If true, use thickness at velocity points from continuity solver. This + ! optioncurrently only works with split mode. +LAPLACIAN = True ! [Boolean] default = False + ! If true, use a Laplacian horizontal viscosity. +KH = 0.0 ! [m2 s-1] default = 0.0 + ! The background Laplacian horizontal viscosity. +KH_BG_MIN = 0.0 ! [m2 s-1] default = 0.0 + ! The minimum value allowed for Laplacian horizontal viscosity, KH. +KH_VEL_SCALE = 0.0 ! [m s-1] default = 0.0 + ! The velocity scale which is multiplied by the grid spacing to calculate the + ! Laplacian viscosity. The final viscosity is the largest of this scaled + ! viscosity, the Smagorinsky and Leith viscosities, and KH. +KH_SIN_LAT = 0.0 ! [m2 s-1] default = 0.0 + ! The amplitude of a latitudinally-dependent background viscosity of the form + ! KH_SIN_LAT*(SIN(LAT)**KH_PWR_OF_SINE). +SMAGORINSKY_KH = True ! [Boolean] default = False + ! If true, use a Smagorinsky nonlinear eddy viscosity. +SMAG_LAP_CONST = 0.05 ! [nondim] default = 0.0 + ! The nondimensional Laplacian Smagorinsky constant, often 0.15. +LEITH_KH = False ! [Boolean] default = False + ! If true, use a Leith nonlinear eddy viscosity. +BOUND_KH = True ! [Boolean] default = True + ! If true, the Laplacian coefficient is locally limited to be stable. +BETTER_BOUND_KH = True ! [Boolean] default = True + ! If true, the Laplacian coefficient is locally limited to be stable with a + ! better bounding than just BOUND_KH. +ANISOTROPIC_VISCOSITY = False ! [Boolean] default = False + ! If true, allow anistropic viscosity in the Laplacian horizontal viscosity. +ADD_LES_VISCOSITY = False ! [Boolean] default = False + ! If true, adds the viscosity from Smagorinsky and Leith to the background + ! viscosity instead of taking the maximum. +BIHARMONIC = True ! [Boolean] default = True + ! If true, use a biharmonic horizontal viscosity. BIHARMONIC may be used with + ! LAPLACIAN. +AH = 0.0 ! [m4 s-1] default = 0.0 + ! The background biharmonic horizontal viscosity. +AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 + ! The velocity scale which is multiplied by the cube of the grid spacing to + ! calculate the biharmonic viscosity. The final viscosity is the largest of this + ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. +AH_TIME_SCALE = 0.0 ! [s] default = 0.0 + ! A time scale whose inverse is multiplied by the fourth power of the grid + ! spacing to calculate biharmonic viscosity. The final viscosity is the largest + ! of all viscosity formulations in use. 0.0 means that it's not used. +SMAGORINSKY_AH = False ! [Boolean] default = False + ! If true, use a biharmonic Smagorinsky nonlinear eddy viscosity. +LEITH_AH = False ! [Boolean] default = False + ! If true, use a biharmonic Leith nonlinear eddy viscosity. +USE_LEITHY = False ! [Boolean] default = False + ! If true, use a biharmonic Leith nonlinear eddy viscosity together with a + ! harmonic backscatter. +BOUND_AH = True ! [Boolean] default = True + ! If true, the biharmonic coefficient is locally limited to be stable. +BETTER_BOUND_AH = True ! [Boolean] default = True + ! If true, the biharmonic coefficient is locally limited to be stable with a + ! better bounding than just BOUND_AH. +RE_AH = 0.0 ! [nondim] default = 0.0 + ! If nonzero, the biharmonic coefficient is scaled so that the biharmonic + ! Reynolds number is equal to this. +USE_LAND_MASK_FOR_HVISC = True ! [Boolean] default = True + ! If true, use the land mask for the computation of thicknesses at velocity + ! locations. This eliminates the dependence on arbitrary values over land or + ! outside of the domain. +HORVISC_BOUND_COEF = 0.8 ! [nondim] default = 0.8 + ! The nondimensional coefficient of the ratio of the viscosity bounds to the + ! theoretical maximum for stability without considering other terms. +USE_KH_BG_2D = False ! [Boolean] default = False + ! If true, read a file containing 2-d background harmonic viscosities. The final + ! viscosity is the maximum of the other terms and this background value. + +! === module MOM_vert_friction === +VERT_FRICTION_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the viscous + ! calculations. Values below 20190101 recover the answers from the end of 2018, + ! while higher values use expressions that do not use an arbitrary hard-coded + ! maximum viscous coupling coefficient between layers. Values below 20230601 + ! recover a form of the viscosity within the mixed layer that breaks up the + ! magnitude of the wind stress in some non-Boussinesq cases. +DIRECT_STRESS = True ! [Boolean] default = False + ! If true, the wind stress is distributed over the topmost HMIX_STRESS of fluid + ! (like in HYCOM), and an added mixed layer viscosity or a physically based + ! boundary layer turbulence parameterization is not needed for stability. +FIXED_DEPTH_LOTW_ML = False ! [Boolean] default = False + ! If true, use a Law-of-the-wall prescription for the mixed layer viscosity + ! within a boundary layer that is the lesser of HMIX_FIXED and the total depth + ! of the ocean in a column. +LOTW_VISCOUS_ML_FLOOR = False ! [Boolean] default = False + ! If true, use a Law-of-the-wall prescription to set a lower bound on the + ! viscous coupling between layers within the surface boundary layer, based the + ! distance of interfaces from the surface. This only acts when there are large + ! changes in the thicknesses of successive layers or when the viscosity is set + ! externally and the wind stress has subsequently increased. +VON_KARMAN_CONST = 0.41 ! [nondim] default = 0.41 + ! The value the von Karman constant as used for mixed layer viscosity. +HARMONIC_VISC = False ! [Boolean] default = False + ! If true, use the harmonic mean thicknesses for calculating the vertical + ! viscosity. +HARMONIC_BL_SCALE = 0.0 ! [nondim] default = 0.0 + ! A scale to determine when water is in the boundary layers based solely on + ! harmonic mean thicknesses for the purpose of determining the extent to which + ! the thicknesses used in the viscosities are upwinded. +HMIX_FIXED = 0.9 ! [m] + ! The prescribed depth over which the near-surface viscosity and diffusivity are + ! elevated when the bulk mixed layer is not used. +HMIX_STRESS = 0.9 ! [m] default = 0.9 + ! The depth over which the wind stress is applied if DIRECT_STRESS is true. +USE_GL90_IN_SSW = False ! [Boolean] default = False + ! If true, use simpler method to calculate 1/N^2 in GL90 vertical viscosity + ! coefficient. This method is valid in stacked shallow water mode. +KV_ML_INVZ2 = 0.0 ! [m2 s-1] default = 0.0 + ! An extra kinematic viscosity in a mixed layer of thickness HMIX_FIXED, with + ! the actual viscosity scaling as 1/(z*HMIX_FIXED)^2, where z is the distance + ! from the surface, to allow for finite wind stresses to be transmitted through + ! infinitesimally thin surface layers. This is an older option for numerical + ! convenience without a strong physical basis, and its use is now discouraged. +MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 + ! The maximum velocity allowed before the velocity components are truncated. +CFL_BASED_TRUNCATIONS = True ! [Boolean] default = True + ! If true, base truncations on the CFL number, and not an absolute speed. +CFL_TRUNCATE = 0.5 ! [nondim] default = 0.5 + ! The value of the CFL number that will cause velocity components to be + ! truncated; instability can occur past 0.5. +CFL_REPORT = 0.5 ! [nondim] default = 0.5 + ! The value of the CFL number that causes accelerations to be reported; the + ! default is CFL_TRUNCATE. +CFL_TRUNCATE_RAMP_TIME = 0.0 ! [s] default = 0.0 + ! The time over which the CFL truncation value is ramped up at the beginning of + ! the run. +CFL_TRUNCATE_START = 0.0 ! [nondim] default = 0.0 + ! The start value of the truncation CFL number used when ramping up CFL_TRUNC. +STOKES_MIXING_COMBINED = False ! [Boolean] default = False + ! Flag to use Stokes drift Mixing via the Lagrangian current (Eulerian plus + ! Stokes drift). Still needs work and testing, so not recommended for use. +VEL_UNDERFLOW = 0.0 ! [m s-1] default = 0.0 + ! A negligibly small velocity magnitude below which velocity components are set + ! to 0. A reasonable value might be 1e-30 m/s, which is less than an Angstrom + ! divided by the age of the universe. + +! === module MOM_barotropic === +USE_BT_CONT_TYPE = True ! [Boolean] default = True + ! If true, use a structure with elements that describe effective face areas from + ! the summed continuity solver as a function the barotropic flow in coupling + ! between the barotropic and baroclinic flow. This is only used if SPLIT is + ! true. +INTEGRAL_BT_CONTINUITY = False ! [Boolean] default = False + ! If true, use the time-integrated velocity over the barotropic steps to + ! determine the integrated transports used to update the continuity equation. + ! Otherwise the transports are the sum of the transports based on a series of + ! instantaneous velocities and the BT_CONT_TYPE for transports. This is only + ! valid if USE_BT_CONT_TYPE = True. +BOUND_BT_CORRECTION = True ! [Boolean] default = False + ! If true, the corrective pseudo mass-fluxes into the barotropic solver are + ! limited to values that require less than maxCFL_BT_cont to be accommodated. +BT_CONT_CORR_BOUNDS = True ! [Boolean] default = True + ! If true, and BOUND_BT_CORRECTION is true, use the BT_cont_type variables to + ! set limits determined by MAXCFL_BT_CONT on the CFL number of the velocities + ! that are likely to be driven by the corrective mass fluxes. +ADJUST_BT_CONT = False ! [Boolean] default = False + ! If true, adjust the curve fit to the BT_cont type that is used by the + ! barotropic solver to match the transport about which the flow is being + ! linearized. +GRADUAL_BT_ICS = False ! [Boolean] default = False + ! If true, adjust the initial conditions for the barotropic solver to the values + ! from the layered solution over a whole timestep instead of instantly. This is + ! a decent approximation to the inclusion of sum(u dh_dt) while also correcting + ! for truncation errors. +BT_USE_VISC_REM_U_UH0 = False ! [Boolean] default = False + ! If true, use the viscous remnants when estimating the barotropic velocities + ! that were used to calculate uh0 and vh0. False is probably the better choice. +BT_PROJECT_VELOCITY = True ! [Boolean] default = False + ! If true, step the barotropic velocity first and project out the velocity + ! tendency by 1+BEBT when calculating the transport. The default (false) is to + ! use a predictor continuity step to find the pressure field, and then to do a + ! corrector continuity step using a weighted average of the old and new + ! velocities, with weights of (1-BEBT) and BEBT. +BT_NONLIN_STRESS = True ! [Boolean] default = False + ! If true, use the full depth of the ocean at the start of the barotropic step + ! when calculating the surface stress contribution to the barotropic + ! acclerations. Otherwise use the depth based on bathyT. +DYNAMIC_SURFACE_PRESSURE = True ! [Boolean] default = False + ! If true, add a dynamic pressure due to a viscous ice shelf, for instance. +ICE_LENGTH_DYN_PSURF = 1.0E+04 ! [m] default = 1.0E+04 + ! The length scale at which the Rayleigh damping rate due to the ice strength + ! should be the same as if a Laplacian were applied, if DYNAMIC_SURFACE_PRESSURE + ! is true. +DEPTH_MIN_DYN_PSURF = 1.0E-06 ! [m] default = 1.0E-06 + ! The minimum depth to use in limiting the size of the dynamic surface pressure + ! for stability, if DYNAMIC_SURFACE_PRESSURE is true.. +CONST_DYN_PSURF = 0.9 ! [nondim] default = 0.9 + ! The constant that scales the dynamic surface pressure, if + ! DYNAMIC_SURFACE_PRESSURE is true. Stable values are < ~1.0. +BT_CORIOLIS_SCALE = 1.0 ! [nondim] default = 1.0 + ! A factor by which the barotropic Coriolis anomaly terms are scaled. +BAROTROPIC_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the expressions in the barotropic solver. Values below 20190101 + ! recover the answers from the end of 2018, while higher values uuse more + ! efficient or general expressions. +BAROTROPIC_TIDAL_SAL_BUG = False ! [Boolean] default = False + ! If true, the tidal self-attraction and loading anomaly in the barotropic + ! solver has the wrong sign, replicating a long-standing bug with a scalar + ! self-attraction and loading term or the SAL term from a previous simulation. +TIDAL_SAL_FLATHER = True ! [Boolean] default = False + ! If true, then apply adjustments to the external gravity wave speed used with + ! the Flather OBC routine consistent with the barotropic solver. This applies to + ! cases with tidal forcing using the scalar self-attraction approximation. The + ! default is currently False in order to retain previous answers but should be + ! set to True for new experiments +SADOURNY = False ! [Boolean] default = True + ! If true, the Coriolis terms are discretized with the Sadourny (1975) energy + ! conserving scheme, otherwise the Arakawa & Hsu scheme is used. If the + ! internal deformation radius is not resolved, the Sadourny scheme should + ! probably be used. +BT_THICK_SCHEME = "FROM_BT_CONT" ! default = "FROM_BT_CONT" + ! A string describing the scheme that is used to set the open face areas used + ! for barotropic transport and the relative weights of the accelerations. Valid + ! values are: + ! ARITHMETIC - arithmetic mean layer thicknesses + ! HARMONIC - harmonic mean layer thicknesses + ! HYBRID (the default) - use arithmetic means for + ! layers above the shallowest bottom, the harmonic + ! mean for layers below, and a weighted average for + ! layers that straddle that depth + ! FROM_BT_CONT - use the average thicknesses kept + ! in the h_u and h_v fields of the BT_cont_type +BT_STRONG_DRAG = True ! [Boolean] default = False + ! If true, use a stronger estimate of the retarding effects of strong bottom + ! drag, by making it implicit with the barotropic time-step instead of implicit + ! with the baroclinic time-step and dividing by the number of barotropic steps. +BT_LINEAR_WAVE_DRAG = False ! [Boolean] default = False + ! If true, apply a linear drag to the barotropic velocities, using rates set by + ! lin_drag_u & _v divided by the depth of the ocean. This was introduced to + ! facilitate tide modeling. +CLIP_BT_VELOCITY = False ! [Boolean] default = False + ! If true, limit any velocity components that exceed CFL_TRUNCATE. This should + ! only be used as a desperate debugging measure. +MAXCFL_BT_CONT = 0.25 ! [nondim] default = 0.25 + ! The maximum permitted CFL number associated with the barotropic accelerations + ! from the summed velocities times the time-derivatives of thicknesses. +DT_BT_FILTER = -0.25 ! [sec or nondim] default = -0.25 + ! A time-scale over which the barotropic mode solutions are filtered, in seconds + ! if positive, or as a fraction of DT if negative. When used this can never be + ! taken to be longer than 2*dt. Set this to 0 to apply no filtering. +G_BT_EXTRA = 0.0 ! [nondim] default = 0.0 + ! A nondimensional factor by which gtot is enhanced. +SSH_EXTRA = 10.0 ! [m] default = 10.0 + ! An estimate of how much higher SSH might get, for use in calculating the safe + ! external wave speed. The default is the minimum of 10 m or 5% of + ! MAXIMUM_DEPTH. +LINEARIZED_BT_CORIOLIS = False ! [Boolean] default = True + ! If true use the bottom depth instead of the total water column thickness in + ! the barotropic Coriolis term calculations. +BEBT = 0.2 ! [nondim] default = 0.1 + ! BEBT determines whether the barotropic time stepping uses the forward-backward + ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range + ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 + ! (for a backward Euler treatment). In practice, BEBT must be greater than about + ! 0.05. +DTBT = -0.9 ! [s or nondim] default = -0.98 + ! The barotropic time step, in s. DTBT is only used with the split explicit time + ! stepping. To set the time step automatically based the maximum stable value + ! use 0, or a negative value gives the fraction of the stable value. Setting + ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will + ! actually be used is an integer fraction of DT, rounding down. +BT_USE_OLD_CORIOLIS_BRACKET_BUG = False ! [Boolean] default = False + ! If True, use an order of operations that is not bitwise rotationally symmetric + ! in the meridional Coriolis term of the barotropic solver. + +! === module MOM_mixed_layer_restrat === +MIXEDLAYER_RESTRAT = True ! [Boolean] default = False + ! If true, a density-gradient dependent re-stratifying flow is imposed in the + ! mixed layer. Can be used in ALE mode without restriction but in layer mode can + ! only be used if BULKMIXEDLAYER is true. +MLE% +USE_BODNER23 = False ! [Boolean] default = False + ! If true, use the Bodner et al., 2023, formulation of the re-stratifying + ! mixed-layer restratification parameterization. This only works in ALE mode. +%MLE +FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0 + ! A nondimensional coefficient that is proportional to the ratio of the + ! deformation radius to the dominant lengthscale of the submesoscale mixed layer + ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic + ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of + ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. + ! (2010) +USE_STANLEY_ML = False ! [Boolean] default = False + ! If true, turn on Stanley SGS T variance parameterization in ML restrat code. +FOX_KEMPER_ML_RESTRAT_COEF2 = 0.0 ! [nondim] default = 0.0 + ! As for FOX_KEMPER_ML_RESTRAT_COEF but used in a second application of the MLE + ! restratification parameterization. +MLE_FRONT_LENGTH = 1500.0 ! [m] default = 0.0 + ! If non-zero, is the frontal-length scale used to calculate the upscaling of + ! buoyancy gradients that is otherwise represented by the parameter + ! FOX_KEMPER_ML_RESTRAT_COEF. If MLE_FRONT_LENGTH is non-zero, it is recommended + ! to set FOX_KEMPER_ML_RESTRAT_COEF=1.0. +MLE_USE_PBL_MLD = True ! [Boolean] default = False + ! If true, the MLE parameterization will use the mixed-layer depth provided by + ! the active PBL parameterization. If false, MLE will estimate a MLD based on a + ! density difference with the surface using the parameter MLE_DENSITY_DIFF. +MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 + ! The time-scale for a running-mean filter applied to the mixed-layer depth used + ! in the MLE restratification parameterization. When the MLD deepens below the + ! current running-mean the running-mean is instantaneously set to the current + ! MLD. +MLE_MLD_DECAY_TIME2 = 0.0 ! [s] default = 0.0 + ! The time-scale for a running-mean filter applied to the filtered mixed-layer + ! depth used in a second MLE restratification parameterization. When the MLD + ! deepens below the current running-mean the running-mean is instantaneously set + ! to the current MLD. +MLE_TAIL_DH = 0.0 ! [nondim] default = 0.0 + ! Fraction by which to extend the mixed-layer restratification depth used for a + ! smoother stream function at the base of the mixed-layer. +MLE_MLD_STRETCH = 1.0 ! [nondim] default = 1.0 + ! A scaling coefficient for stretching/shrinking the MLD used in the MLE scheme. + ! This simply multiplies MLD wherever used. +KV_RESTRAT = 0.0 ! [m2 s-1] default = 0.0 + ! A small viscosity that sets a floor on the momentum mixing rate during + ! restratification. If this is positive, it will prevent some possible + ! divisions by zero even if ustar, RESTRAT_USTAR_MIN, and f are all 0. +RESTRAT_USTAR_MIN = 1.45842E-18 ! [m s-1] default = 1.45842E-18 + ! The minimum value of ustar that will be used by the mixed layer + ! restratification module. This can be tiny, but if this is greater than 0, it + ! will prevent divisions by zero when f and KV_RESTRAT are zero. + +! === module MOM_diagnostics === +DIAG_EBT_MONO_N2_COLUMN_FRACTION = 0.0 ! [nondim] default = 0.0 + ! The lower fraction of water column over which N2 is limited as monotonic for + ! the purposes of calculating the equivalent barotropic wave speed. +DIAG_EBT_MONO_N2_DEPTH = -1.0 ! [m] default = -1.0 + ! The depth below which N2 is limited as monotonic for the purposes of + ! calculating the equivalent barotropic wave speed. + +! === module MOM_diabatic_driver === +! The following parameters are used for diabatic processes. +USE_LEGACY_DIABATIC_DRIVER = False ! [Boolean] default = True + ! If true, use a legacy version of the diabatic subroutine. This is temporary + ! and is needed to avoid change in answers. +ENERGETICS_SFC_PBL = True ! [Boolean] default = False + ! If true, use an implied energetics planetary boundary layer scheme to + ! determine the diffusivity and viscosity in the surface boundary layer. +EPBL_IS_ADDITIVE = False ! [Boolean] default = True + ! If true, the diffusivity from ePBL is added to all other diffusivities. + ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. +PRANDTL_EPBL = 1.0 ! [nondim] default = 1.0 + ! The Prandtl number used by ePBL to convert vertical diffusivities into + ! viscosities. +INTERNAL_TIDES = False ! [Boolean] default = False + ! If true, use the code that advances a separate set of equations for the + ! internal tide energy density. +MASSLESS_MATCH_TARGETS = True ! [Boolean] default = True + ! If true, the temperature and salinity of massless layers are kept consistent + ! with their target densities. Otherwise the properties of massless layers + ! evolve diffusively to match massive neighboring layers. +AGGREGATE_FW_FORCING = True ! [Boolean] default = True + ! If true, the net incoming and outgoing fresh water fluxes are combined and + ! applied as either incoming or outgoing depending on the sign of the net. If + ! false, the net incoming fresh water flux is added to the model and thereafter + ! the net outgoing is removed from the topmost non-vanished layers of the + ! updated state. +MIX_BOUNDARY_TRACERS = True ! [Boolean] default = True + ! If true, mix the passive tracers in massless layers at the bottom into the + ! interior as though a diffusivity of KD_MIN_TR were operating. +MIX_BOUNDARY_TRACER_ALE = False ! [Boolean] default = False + ! If true and in ALE mode, mix the passive tracers in massless layers at the + ! bottom into the interior as though a diffusivity of KD_MIN_TR were operating. +KD_MIN_TR = 1.0E-07 ! [m2 s-1] default = 1.0E-07 + ! A minimal diffusivity that should always be applied to tracers, especially in + ! massless layers near the bottom. The default is 0.1*KD. +KD_BBL_TR = 0.0 ! [m2 s-1] default = 0.0 + ! A bottom boundary layer tracer diffusivity that will allow for explicitly + ! specified bottom fluxes. The entrainment at the bottom is at least + ! sqrt(Kd_BBL_tr*dt) over the same distance. +TRACER_TRIDIAG = False ! [Boolean] default = False + ! If true, use the passive tracer tridiagonal solver for T and S +MINIMUM_FORCING_DEPTH = 0.001 ! [m] default = 0.001 + ! The smallest depth over which forcing can be applied. This only takes effect + ! when near-surface layers become thin relative to this scale, in which case the + ! forcing tendencies scaled down by distributing the forcing over this depth + ! scale. +EVAP_CFL_LIMIT = 0.8 ! [nondim] default = 0.8 + ! The largest fraction of a layer than can be lost to forcing (e.g. evaporation, + ! sea-ice formation) in one time-step. The unused mass loss is passed down + ! through the column. +MLD_EN_VALS = 3*0.0 ! [J/m2] default = 0.0 + ! The energy values used to compute MLDs. If not set (or all set to 0.), the + ! default will overwrite to 25., 2500., 250000. +DIAG_MLD_DENSITY_DIFF = 0.1 ! [kg/m3] default = 0.1 + ! The density difference used to determine a diagnostic mixed layer depth, + ! MLD_user, following the definition of Levitus 1982. The MLD is the depth at + ! which the density is larger than the surface density by the specified amount. +DIAG_DEPTH_SUBML_N2 = 50.0 ! [m] default = 50.0 + ! The distance over which to calculate a diagnostic of the stratification at the + ! base of the mixed layer. + +! === module MOM_CVMix_KPP === +! This is the MOM wrapper to CVMix:KPP +! See http://cvmix.github.io/ +USE_KPP = False ! [Boolean] default = False + ! If true, turns on the [CVMix] KPP scheme of Large et al., 1994, to calculate + ! diffusivities and non-local transport in the OBL. + +! === module MOM_CVMix_conv === +! Parameterization of enhanced mixing due to convection via CVMix +USE_CVMix_CONVECTION = False ! [Boolean] default = False + ! If true, turns on the enhanced mixing due to convection via CVMix. This scheme + ! increases diapycnal diffs./viscs. at statically unstable interfaces. Relevant + ! parameters are contained in the CVMix_CONVECTION% parameter block. + +! === module MOM_geothermal === +GEOTHERMAL_SCALE = 0.0 ! [W m-2 or various] default = 0.0 + ! The constant geothermal heat flux, a rescaling factor for the heat flux read + ! from GEOTHERMAL_FILE, or 0 to disable the geothermal heating. + +! === module MOM_set_diffusivity === +FLUX_RI_MAX = 0.2 ! [nondim] default = 0.2 + ! The flux Richardson number where the stratification is large enough that N2 > + ! omega2. The full expression for the Flux Richardson number is usually + ! FLUX_RI_MAX*N2/(N2+OMEGA2). +SET_DIFF_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the set diffusivity + ! calculations. Values below 20190101 recover the answers from the end of 2018, + ! while higher values use updated and more robust forms of the same expressions. + +! === module MOM_tidal_mixing === +! Vertical Tidal Mixing Parameterization +USE_CVMix_TIDAL = False ! [Boolean] default = False + ! If true, turns on tidal mixing via CVMix +INT_TIDE_DISSIPATION = False ! [Boolean] default = False + ! If true, use an internal tidal dissipation scheme to drive diapycnal mixing, + ! along the lines of St. Laurent et al. (2002) and Simmons et al. (2004). +ML_RADIATION = False ! [Boolean] default = False + ! If true, allow a fraction of TKE available from wind work to penetrate below + ! the base of the mixed layer with a vertical decay scale determined by the + ! minimum of: (1) The depth of the mixed layer, (2) an Ekman length scale. +BBL_EFFIC = 0.0 ! [nondim] default = 0.2 + ! The efficiency with which the energy extracted by bottom drag drives BBL + ! diffusion. This is only used if BOTTOMDRAGLAW is true. +BBL_MIXING_MAX_DECAY = 200.0 ! [m] default = 200.0 + ! The maximum decay scale for the BBL diffusion, or 0 to allow the mixing to + ! penetrate as far as stratification and rotation permit. The default for now + ! is 200 m. This is only used if BOTTOMDRAGLAW is true. +BBL_MIXING_AS_MAX = False ! [Boolean] default = True + ! If true, take the maximum of the diffusivity from the BBL mixing and the other + ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added. +USE_LOTW_BBL_DIFFUSIVITY = False ! [Boolean] default = False + ! If true, uses a simple, imprecise but non-coordinate dependent, model of BBL + ! mixing diffusivity based on Law of the Wall. Otherwise, uses the original BBL + ! scheme. +DZ_BBL_AVG_MIN = 0.0 ! [m] default = 0.0 + ! A minimal distance over which to average to determine the average bottom + ! boundary layer density. +SIMPLE_TKE_TO_KD = False ! [Boolean] default = False + ! If true, uses a simple estimate of Kd/TKE that will work for arbitrary + ! vertical coordinates. If false, calculates Kd/TKE and bounds based on exact + ! energetics for an isopycnal layer-formulation. + +! === module MOM_bkgnd_mixing === +! Adding static vertical background mixing coefficients +KD = 1.0E-06 ! [m2 s-1] default = 0.0 + ! The background diapycnal diffusivity of density in the interior. Zero or the + ! molecular value, ~1e-7 m2 s-1, may be used. +KD_MIN = 2.0E-07 ! [m2 s-1] default = 1.0E-08 + ! The minimum diapycnal diffusivity. +BRYAN_LEWIS_DIFFUSIVITY = False ! [Boolean] default = False + ! If true, use a Bryan & Lewis (JGR 1979) like tanh profile of background + ! diapycnal diffusivity with depth. This is done via CVMix. +HORIZ_VARYING_BACKGROUND = False ! [Boolean] default = False + ! If true, apply vertically uniform, latitude-dependent background diffusivity, + ! as described in Danabasoglu et al., 2012 +PRANDTL_BKGND = 1.0 ! [nondim] default = 1.0 + ! Turbulent Prandtl number used to convert vertical background diffusivities + ! into viscosities. +HENYEY_IGW_BACKGROUND = False ! [Boolean] default = False + ! If true, use a latitude-dependent scaling for the near surface background + ! diffusivity, as described in Harrison & Hallberg, JPO 2008. +KD_TANH_LAT_FN = False ! [Boolean] default = False + ! If true, use a tanh dependence of Kd_sfc on latitude, like CM2.1/CM2M. There + ! is no physical justification for this form, and it can not be used with + ! HENYEY_IGW_BACKGROUND. +KD_MAX = -1.0 ! [m2 s-1] default = -1.0 + ! The maximum permitted increment for the diapycnal diffusivity from TKE-based + ! parameterizations, or a negative value for no limit. +KD_ADD = 0.0 ! [m2 s-1] default = 0.0 + ! A uniform diapycnal diffusivity that is added everywhere without any filtering + ! or scaling. +USER_CHANGE_DIFFUSIVITY = False ! [Boolean] default = False + ! If true, call user-defined code to change the diffusivity. +DISSIPATION_MIN = 0.0 ! [W m-3] default = 0.0 + ! The minimum dissipation by which to determine a lower bound of Kd (a floor). +DISSIPATION_N0 = 0.0 ! [W m-3] default = 0.0 + ! The intercept when N=0 of the N-dependent expression used to set a minimum + ! dissipation by which to determine a lower bound of Kd (a floor): A in eps_min + ! = A + B*N. +DISSIPATION_N1 = 0.0 ! [J m-3] default = 0.0 + ! The coefficient multiplying N, following Gargett, used to set a minimum + ! dissipation by which to determine a lower bound of Kd (a floor): B in eps_min + ! = A + B*N +DISSIPATION_KD_MIN = 0.0 ! [m2 s-1] default = 0.0 + ! The minimum vertical diffusivity applied as a floor. +DOUBLE_DIFFUSION = True ! [Boolean] default = False + ! If true, increase diffusivites for temperature or salinity based on the + ! double-diffusive parameterization described in Large et al. (1994). +MAX_RRHO_SALT_FINGERS = 2.55 ! [nondim] default = 2.55 + ! Maximum density ratio for salt fingering regime. +MAX_SALT_DIFF_SALT_FINGERS = 1.0E-04 ! [m2 s-1] default = 1.0E-04 + ! Maximum salt diffusivity for salt fingering regime. +KV_MOLECULAR = 1.5E-06 ! [m2 s-1] default = 1.5E-06 + ! Molecular viscosity for calculation of fluxes under double-diffusive + ! convection. + +! === module MOM_kappa_shear === +! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 +USE_JACKSON_PARAM = True ! [Boolean] default = False + ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing + ! parameterization. +VERTEX_SHEAR = False ! [Boolean] default = False + ! If true, do the calculations of the shear-driven mixing at the cell vertices + ! (i.e., the vorticity points). +RINO_CRIT = 0.25 ! [nondim] default = 0.25 + ! The critical Richardson number for shear mixing. +SHEARMIX_RATE = 0.089 ! [nondim] default = 0.089 + ! A nondimensional rate scale for shear-driven entrainment. Jackson et al find + ! values in the range of 0.085-0.089. +MAX_RINO_IT = 25 ! [nondim] default = 50 + ! The maximum number of iterations that may be used to estimate the Richardson + ! number driven mixing. +KD_KAPPA_SHEAR_0 = 1.0E-06 ! [m2 s-1] default = 1.0E-06 + ! The background diffusivity that is used to smooth the density and shear + ! profiles before solving for the diffusivities. The default is the greater of + ! KD and 1e-7 m2 s-1. +KD_SEED_KAPPA_SHEAR = 1.0 ! [m2 s-1] default = 1.0 + ! A moderately large seed value of diapycnal diffusivity that is used as a + ! starting turbulent diffusivity in the iterations to find an energetically + ! constrained solution for the shear-driven diffusivity. +KD_TRUNC_KAPPA_SHEAR = 1.0E-08 ! [m2 s-1] default = 1.0E-08 + ! The value of shear-driven diffusivity that is considered negligible and is + ! rounded down to 0. The default is 1% of KD_KAPPA_SHEAR_0. +FRI_CURVATURE = -0.97 ! [nondim] default = -0.97 + ! The nondimensional curvature of the function of the Richardson number in the + ! kappa source term in the Jackson et al. scheme. +TKE_N_DECAY_CONST = 0.24 ! [nondim] default = 0.24 + ! The coefficient for the decay of TKE due to stratification (i.e. proportional + ! to N*tke). The values found by Jackson et al. are 0.24-0.28. +TKE_SHEAR_DECAY_CONST = 0.14 ! [nondim] default = 0.14 + ! The coefficient for the decay of TKE due to shear (i.e. proportional to + ! |S|*tke). The values found by Jackson et al. are 0.14-0.12. +KAPPA_BUOY_SCALE_COEF = 0.82 ! [nondim] default = 0.82 + ! The coefficient for the buoyancy length scale in the kappa equation. The + ! values found by Jackson et al. are in the range of 0.81-0.86. +KAPPA_N_OVER_S_SCALE_COEF2 = 0.0 ! [nondim] default = 0.0 + ! The square of the ratio of the coefficients of the buoyancy and shear scales + ! in the diffusivity equation, Set this to 0 (the default) to eliminate the + ! shear scale. This is only used if USE_JACKSON_PARAM is true. +KAPPA_SHEAR_TOL_ERR = 0.1 ! [nondim] default = 0.1 + ! The fractional error in kappa that is tolerated. Iteration stops when changes + ! between subsequent iterations are smaller than this everywhere in a column. + ! The peak diffusivities usually converge most rapidly, and have much smaller + ! errors than this. +TKE_BACKGROUND = 0.0 ! [m2 s-2] default = 0.0 + ! A background level of TKE used in the first iteration of the kappa equation. + ! TKE_BACKGROUND could be 0. +KAPPA_SHEAR_ELIM_MASSLESS = True ! [Boolean] default = True + ! If true, massless layers are merged with neighboring massive layers in this + ! calculation. The default is true and I can think of no good reason why it + ! should be false. This is only used if USE_JACKSON_PARAM is true. +MAX_KAPPA_SHEAR_IT = 13 ! default = 13 + ! The maximum number of iterations that may be used to estimate the + ! time-averaged diffusivity. +KAPPA_SHEAR_MAX_KAP_SRC_CHG = 10.0 ! [nondim] default = 10.0 + ! The maximum permitted increase in the kappa source within an iteration + ! relative to the local source; this must be greater than 1. The lower limit + ! for the permitted fractional decrease is (1 - 0.5/kappa_src_max_chg). These + ! limits could perhaps be made dynamic with an improved iterative solver. +KAPPA_SHEAR_ITER_BUG = False ! [Boolean] default = False + ! If true, use an older, dimensionally inconsistent estimate of the derivative + ! of diffusivity with energy in the Newton's method iteration. The bug causes + ! undercorrections when dz > 1 m. +KAPPA_SHEAR_ALL_LAYER_TKE_BUG = False ! [Boolean] default = False + ! If true, report back the latest estimate of TKE instead of the time average + ! TKE when there is mass in all layers. Otherwise always report the time + ! averaged TKE, as is currently done when there are some massless layers. +USE_RESTRICTIVE_TOLERANCE_CHECK = False ! [Boolean] default = False + ! If true, uses the more restrictive tolerance check to determine if a timestep + ! is acceptable for the KS_it outer iteration loop. False uses the original + ! less restrictive check. + +! === module MOM_CVMix_shear === +! Parameterization of shear-driven turbulence via CVMix (various options) +USE_LMD94 = False ! [Boolean] default = False + ! If true, use the Large-McWilliams-Doney (JGR 1994) shear mixing + ! parameterization. +USE_PP81 = False ! [Boolean] default = False + ! If true, use the Pacanowski and Philander (JPO 1981) shear mixing + ! parameterization. + +! === module MOM_CVMix_ddiff === +! Parameterization of mixing due to double diffusion processes via CVMix +USE_CVMIX_DDIFF = False ! [Boolean] default = False + ! If true, turns on double diffusive processes via CVMix. Note that double + ! diffusive processes on viscosity are ignored in CVMix, see + ! http://cvmix.github.io/ for justification. + +! === module MOM_diabatic_aux === +! The following parameters are used for auxiliary diabatic processes. +RECLAIM_FRAZIL = True ! [Boolean] default = True + ! If true, try to use any frazil heat deficit to cool any overlying layers down + ! to the freezing point, thereby avoiding the creation of thin ice when the SST + ! is above the freezing point. +SALT_EXTRACTION_LIMIT = 0.9999 ! [nondim] default = 0.9999 + ! An upper limit on the fraction of the salt in a layer that can be lost to the + ! net surface salt fluxes within a timestep. +PRESSURE_DEPENDENT_FRAZIL = True ! [Boolean] default = False + ! If true, use a pressure dependent freezing temperature when making frazil. The + ! default is false, which will be faster but is inappropriate with ice-shelf + ! cavities. +IGNORE_FLUXES_OVER_LAND = True ! [Boolean] default = False + ! If true, the model does not check if fluxes are being applied over land + ! points. This is needed when the ocean is coupled with ice shelves and sea ice, + ! since the sea ice mask needs to be different than the ocean mask to avoid sea + ! ice formation under ice shelves. This flag only works when use_ePBL = True. +DO_RIVERMIX = True ! [Boolean] default = False + ! If true, apply additional mixing wherever there is runoff, so that it is mixed + ! down to RIVERMIX_DEPTH if the ocean is that deep. +RIVERMIX_DEPTH = 5.0 ! [m] default = 0.0 + ! The depth to which rivers are mixed if DO_RIVERMIX is defined. +USE_RIVER_HEAT_CONTENT = False ! [Boolean] default = False + ! If true, use the fluxes%runoff_Hflx field to set the heat carried by runoff, + ! instead of using SST*CP*liq_runoff. +USE_CALVING_HEAT_CONTENT = False ! [Boolean] default = False + ! If true, use the fluxes%calving_Hflx field to set the heat carried by runoff, + ! instead of using SST*CP*froz_runoff. +DO_BRINE_PLUME = False ! [Boolean] default = False + ! If true, use a brine plume parameterization from Nguyen et al., 2009. +VAR_PEN_SW = True ! [Boolean] default = False + ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine + ! the e-folding depth of incoming short wave radiation. +CHL_FROM_FILE = False ! [Boolean] default = True + ! If true, chl_a is read from a file. + +! === module MOM_energetic_PBL === +ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0 + ! When setting the decay scale for turbulence, use this fraction of the absolute + ! rotation rate blended with the local value of f, as sqrt((1-of)*f^2 + + ! of*4*omega^2). +EKMAN_SCALE_COEF = 1.0 ! [nondim] default = 1.0 + ! A nondimensional scaling factor controlling the inhibition of the diffusive + ! length scale by rotation. Making this larger decreases the PBL diffusivity. +EPBL_ANSWER_DATE = 20231231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the energetic PBL + ! calculations. Values below 20190101 recover the answers from the end of 2018, + ! while higher values use updated and more robust forms of the same expressions. + ! Values below 20240101 use A**(1./3.) to estimate the cube root of A in several + ! expressions, while higher values use the integer root function cuberoot(A) and + ! therefore can work with scaled variables. +EPBL_ORIGINAL_PE_CALC = True ! [Boolean] default = True + ! If true, the ePBL code uses the original form of the potential energy change + ! code. Otherwise, the newer version that can work with successive increments + ! to the diffusivity in upward or downward passes is used. +MKE_TO_TKE_EFFIC = 0.0 ! [nondim] default = 0.0 + ! The efficiency with which mean kinetic energy released by mechanically forced + ! entrainment of the mixed layer is converted to turbulent kinetic energy. +TKE_DECAY = 0.001 ! [nondim] default = 2.5 + ! TKE_DECAY relates the vertical rate of decay of the TKE available for + ! mechanical entrainment to the natural Ekman depth. +EPBL_MSTAR_SCHEME = "REICHL_H18" ! default = "CONSTANT" + ! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are: + ! CONSTANT - Use a fixed mstar given by MSTAR + ! OM4 - Use L_Ekman/L_Obukhov in the stabilizing limit, as in OM4 + ! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018. +MSTAR_CAP = 10.0 ! [nondim] default = -1.0 + ! If this value is positive, it sets the maximum value of mstar allowed in ePBL. + ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT). +RH18_MSTAR_CN1 = 0.275 ! [nondim] default = 0.275 + ! MSTAR_N coefficient 1 (outter-most coefficient for fit). The value of 0.275 is + ! given in RH18. Increasing this coefficient increases MSTAR for all values of + ! Hf/ust, but more effectively at low values (weakly developed OSBLs). +RH18_MSTAR_CN2 = 8.0 ! [nondim] default = 8.0 + ! MSTAR_N coefficient 2 (coefficient outside of exponential decay). The value of + ! 8.0 is given in RH18. Increasing this coefficient increases MSTAR for all + ! values of HF/ust, with a much more even effect across a wide range of Hf/ust + ! than CN1. +RH18_MSTAR_CN3 = -6.0 ! [nondim] default = -5.0 + ! MSTAR_N coefficient 3 (exponential decay coefficient). The value of -5.0 is + ! given in RH18. Increasing this increases how quickly the value of MSTAR + ! decreases as Hf/ust increases. +RH18_MSTAR_CS1 = 0.2 ! [nondim] default = 0.2 + ! MSTAR_S coefficient for RH18 in stabilizing limit. The value of 0.2 is given + ! in RH18 and increasing it increases MSTAR in the presence of a stabilizing + ! surface buoyancy flux. +RH18_MSTAR_CS2 = 0.4 ! [nondim] default = 0.4 + ! MSTAR_S exponent for RH18 in stabilizing limit. The value of 0.4 is given in + ! RH18 and increasing it increases MSTAR exponentially in the presence of a + ! stabilizing surface buoyancy flux. +NSTAR = 0.06 ! [nondim] default = 0.2 + ! The portion of the buoyant potential energy imparted by surface fluxes that is + ! available to drive entrainment at the base of mixed layer when that energy is + ! positive. +MSTAR_CONV_ADJ = 0.66 ! [nondim] default = 0.0 + ! Coefficient used for reducing mstar during convection due to reduction of + ! stable density gradient. +USE_MLD_ITERATION = True ! [Boolean] default = True + ! A logical that specifies whether or not to use the distance to the bottom of + ! the actively turbulent boundary layer to help set the EPBL length scale. +EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1 + ! A scale for the mixing length in the transition layer at the edge of the + ! boundary layer as a fraction of the boundary layer thickness. +MLD_ITERATION_GUESS = False ! [Boolean] default = False + ! If true, use the previous timestep MLD as a first guess in the MLD iteration, + ! otherwise use half the ocean depth as the first guess of the boundary layer + ! depth. The default is false to facilitate reproducibility. +EPBL_MLD_TOLERANCE = 1.0 ! [meter] default = 1.0 + ! The tolerance for the iteratively determined mixed layer depth. This is only + ! used with USE_MLD_ITERATION. +EPBL_MLD_BISECTION = True ! [Boolean] default = False + ! If true, use bisection with the iterative determination of the self-consistent + ! mixed layer depth. Otherwise use the false position after a maximum and + ! minimum bound have been evaluated and the returned value or bisection before + ! this. +EPBL_MLD_MAX_ITS = 40 ! default = 20 + ! The maximum number of iterations that can be used to find a self-consistent + ! mixed layer depth. If EPBL_MLD_BISECTION is true, the maximum number + ! iteractions needed is set by Depth/2^MAX_ITS < EPBL_MLD_TOLERANCE. +EPBL_MIN_MIX_LEN = 0.0 ! [meter] default = 0.0 + ! The minimum mixing length scale that will be used by ePBL. The default (0) + ! does not set a minimum. +MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0 + ! The exponent applied to the ratio of the distance to the MLD and the MLD depth + ! which determines the shape of the mixing length. This is only used if + ! USE_MLD_ITERATION is True. +EPBL_VEL_SCALE_SCHEME = "REICHL_H18" ! default = "CUBE_ROOT_TKE" + ! Selects the method for translating TKE into turbulent velocities. Valid values + ! are: + ! CUBE_ROOT_TKE - A constant times the cube root of remaining TKE. + ! REICHL_H18 - Use the scheme based on a combination of w* and v* as + ! documented in Reichl & Hallberg, 2018. +WSTAR_USTAR_COEF = 15.0 ! [nondim] default = 1.0 + ! A ratio relating the efficiency with which convectively released energy is + ! converted to a turbulent velocity, relative to mechanically forced TKE. Making + ! this larger increases the BL diffusivity +EPBL_VEL_SCALE_FACTOR = 0.5477 ! [nondim] default = 1.0 + ! An overall nondimensional scaling factor for wT. Making this larger increases + ! the PBL diffusivity. +VSTAR_SURF_FAC = 1.8258 ! [nondim] default = 1.2 + ! The proportionality times ustar to set vstar at the surface. +USE_LA_LI2016 = True ! [Boolean] default = False + ! A logical to use the Li et al. 2016 (submitted) formula to determine the + ! Langmuir number. +EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" + ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. + ! Valid values are: + ! NONE - Do not do any extra mixing due to Langmuir turbulence + ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir + ! turbulence + ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other + ! contributions +LT_ENHANCE_COEF = 0.1056 ! [nondim] default = 0.447 + ! Coefficient for Langmuir enhancement of mstar +LT_ENHANCE_EXP = -1.0 ! [nondim] default = -1.33 + ! Exponent for Langmuir enhancementt of mstar +LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 + ! Coefficient for modification of Langmuir number due to MLD approaching Ekman + ! depth. +LT_MOD_LAC2 = 0.0 ! [nondim] default = 0.0 + ! Coefficient for modification of Langmuir number due to MLD approaching stable + ! Obukhov depth. +LT_MOD_LAC3 = 0.0 ! [nondim] default = 0.0 + ! Coefficient for modification of Langmuir number due to MLD approaching + ! unstable Obukhov depth. +LT_MOD_LAC4 = 0.8 ! [nondim] default = 0.95 + ! Coefficient for modification of Langmuir number due to ratio of Ekman to + ! stable Obukhov depth. +LT_MOD_LAC5 = 0.8 ! [nondim] default = 0.95 + ! Coefficient for modification of Langmuir number due to ratio of Ekman to + ! unstable Obukhov depth. +!EPBL_USTAR_MIN = 1.45842E-18 ! [m s-1] + ! The (tiny) minimum friction velocity used within the ePBL code, derived from + ! OMEGA and ANGSTROM. + +! === module MOM_regularize_layers === +REGULARIZE_SURFACE_LAYERS = False ! [Boolean] default = False + ! If defined, vertically restructure the near-surface layers when they have too + ! much lateral variations to allow for sensible lateral barotropic transports. + +! === module MOM_opacity === +OPACITY_SCHEME = "MANIZZA_05" ! default = "MANIZZA_05" + ! This character string specifies how chlorophyll concentrations are translated + ! into opacities. Currently valid options include: + ! MANIZZA_05 - Use Manizza et al., GRL, 2005. + ! MOREL_88 - Use Morel, JGR, 1988. +BLUE_FRAC_SW = 0.5 ! [nondim] default = 0.5 + ! The fraction of the penetrating shortwave radiation that is in the blue band. +PEN_SW_NBANDS = 3 ! default = 1 + ! The number of bands of penetrating shortwave radiation. +OPTICS_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the optics + ! calculations. Values below 20190101 recover the answers from the end of 2018, + ! while higher values use updated and more robust forms of the same expressions. +PEN_SW_FLUX_ABSORB = 2.5E-11 ! [degC m s-1] default = 2.5E-11 + ! A minimum remaining shortwave heating rate that will be simply absorbed in the + ! next sufficiently thick layers for computational efficiency, instead of + ! continuing to penetrate. The default, 2.5e-11 degC m s-1, is about 1e-4 W m-2 + ! or 0.08 degC m century-1, but 0 is also a valid value. +PEN_SW_ABSORB_MINTHICK = 1.0 ! [m] default = 1.0 + ! A thickness that is used to absorb the remaining penetrating shortwave heat + ! flux when it drops below PEN_SW_FLUX_ABSORB. +OPACITY_LAND_VALUE = 10.0 ! [m-1] default = 10.0 + ! The value to use for opacity over land. The default is 10 m-1 - a value for + ! muddy water. + +! === module MOM_tracer_advect === +TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" + ! The horizontal transport scheme for tracers: + ! PLM - Piecewise Linear Method + ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) + ! PPM - Piecewise Parabolic Method (Colella-Woodward) + +! === module MOM_tracer_hor_diff === +KHTR = 0.0 ! [m2 s-1] default = 0.0 + ! The background along-isopycnal tracer diffusivity. +KHTR_USE_EBT_STRUCT = False ! [Boolean] default = False + ! If true, uses the equivalent barotropic structure as the vertical structure of + ! the tracer diffusivity. +KHTR_MIN = 0.0 ! [m2 s-1] default = 0.0 + ! The minimum along-isopycnal tracer diffusivity. +KHTR_MAX = 0.0 ! [m2 s-1] default = 0.0 + ! The maximum along-isopycnal tracer diffusivity. +KHTR_PASSIVITY_COEFF = 0.0 ! [nondim] default = 0.0 + ! The coefficient that scales deformation radius over grid-spacing in passivity, + ! where passivity is the ratio between along isopycnal mixing of tracers to + ! thickness mixing. A non-zero value enables this parameterization. +KHTR_PASSIVITY_MIN = 0.5 ! [nondim] default = 0.5 + ! The minimum passivity which is the ratio between along isopycnal mixing of + ! tracers to thickness mixing. +DIFFUSE_ML_TO_INTERIOR = False ! [Boolean] default = False + ! If true, enable epipycnal mixing between the surface boundary layer and the + ! interior. +CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False + ! If true, use enough iterations the diffusion to ensure that the diffusive + ! equivalent of the CFL limit is not violated. If false, always use the greater + ! of 1 or MAX_TR_DIFFUSION_CFL iteration. +MAX_TR_DIFFUSION_CFL = -1.0 ! [nondim] default = -1.0 + ! If positive, locally limit the along-isopycnal tracer diffusivity to keep the + ! diffusive CFL locally at or below this value. The number of diffusive + ! iterations is often this value or the next greater integer. +RECALC_NEUTRAL_SURF = False ! [Boolean] default = False + ! If true, then recalculate the neutral surfaces if the + ! diffusive CFL is exceeded. If false, assume that the + ! positions of the surfaces do not change + +! === module MOM_neutral_diffusion === +! This module implements neutral diffusion of tracers +USE_NEUTRAL_DIFFUSION = False ! [Boolean] default = False + ! If true, enables the neutral diffusion module. + +! === module MOM_hor_bnd_diffusion === +! This module implements horizontal diffusion of tracers near boundaries +USE_HORIZONTAL_BOUNDARY_DIFFUSION = False ! [Boolean] default = False + ! If true, enables the horizonal boundary tracer's diffusion module. +OBSOLETE_DIAGNOSTIC_IS_FATAL = True ! [Boolean] default = True + ! If an obsolete diagnostic variable appears in the diag_table, cause a FATAL + ! error rather than issue a WARNING. + +! === module MOM_sum_output === +CALCULATE_APE = False ! [Boolean] default = True + ! If true, calculate the available potential energy of the interfaces. Setting + ! this to false reduces the memory footprint of high-PE-count models + ! dramatically. +WRITE_STOCKS = True ! [Boolean] default = True + ! If true, write the integrated tracer amounts to stdout when the energy files + ! are written. +MAXTRUNC = 1000 ! [truncations save_interval-1] default = 0 + ! The run will be stopped, and the day set to a very large value if the velocity + ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 + ! to stop if there is any truncation of velocities. +MAX_ENERGY = 0.0 ! [m2 s-2] default = 0.0 + ! The maximum permitted average energy per unit mass; the model will be stopped + ! if there is more energy than this. If zero or negative, this is set to + ! 10*MAXVEL^2. +ENERGYFILE = "ocean.stats" ! default = "ocean.stats" + ! The file to use to write the energies and globally summed diagnostics. +DATE_STAMPED_STDOUT = True ! [Boolean] default = True + ! If true, use dates (not times) in messages to stdout +TIMEUNIT = 8.64E+04 ! [s] default = 8.64E+04 + ! The time unit in seconds a number of input fields +ENERGYSAVEDAYS = 1.0 ! [days] default = 1.0 + ! The interval in units of TIMEUNIT between saves of the energies of the run and + ! other globally summed diagnostics. +ENERGYSAVEDAYS_GEOMETRIC = 0.0 ! [days] default = 0.0 + ! The starting interval in units of TIMEUNIT for the first call to save the + ! energies of the run and other globally summed diagnostics. The interval + ! increases by a factor of 2. after each call to write_energy. + +! === module ocean_stochastics_init === +DO_SPPT = False ! [Boolean] default = False + ! If true, then stochastically perturb the thermodynamic tendemcies of T,S, amd + ! h. Amplitude and correlations are controlled by the nam_stoch namelist in the + ! UFS model only. +PERT_EPBL = False ! [Boolean] default = False + ! If true, then stochastically perturb the kinetic energy production and + ! dissipation terms. Amplitude and correlations are controlled by the nam_stoch + ! namelist in the UFS model only. + +! === module ocean_model_init === +SINGLE_STEPPING_CALL = True ! [Boolean] default = True + ! If true, advance the state of MOM with a single step including both dynamics + ! and thermodynamics. If false, the two phases are advanced with separate + ! calls. +RESTART_CONTROL = 1 ! default = 1 + ! An integer whose bits encode which restart files are written. Add 2 (bit 1) + ! for a time-stamped file, and odd (bit 0) for a non-time-stamped file. A + ! restart file will be saved at the end of the run segment for any non-negative + ! value. +OCEAN_SURFACE_STAGGER = "C" ! default = "C" + ! A case-insensitive character string to indicate the staggering of the surface + ! velocity field that is returned to the coupler. Valid values include 'A', + ! 'B', or 'C'. +ICEBERGS_APPLY_RIGID_BOUNDARY = False ! [Boolean] default = False + ! If true, allows icebergs to change boundary condition felt by ocean + +! === module MOM_surface_forcing === +LATENT_HEAT_FUSION = 3.34E+05 ! [J/kg] default = 3.34E+05 + ! The latent heat of fusion. +LATENT_HEAT_VAPORIZATION = 2.5E+06 ! [J/kg] default = 2.5E+06 + ! The latent heat of fusion. +MAX_P_SURF = 0.0 ! [Pa] default = -1.0 + ! The maximum surface pressure that can be exerted by the atmosphere and + ! floating sea-ice or ice shelves. This is needed because the FMS coupling + ! structure does not limit the water that can be frozen out of the ocean and the + ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a + ! negative value is used. +RESTORE_SALINITY = False ! [Boolean] default = False + ! If true, the coupled driver will add a globally-balanced fresh-water flux that + ! drives sea-surface salinity toward specified values. +RESTORE_TEMPERATURE = False ! [Boolean] default = False + ! If true, the coupled driver will add a heat flux that drives sea-surface + ! temperature toward specified values. +ADJUST_NET_SRESTORE_TO_ZERO = False ! [Boolean] default = False + ! If true, adjusts the salinity restoring seen to zero whether restoring is via + ! a salt flux or virtual precip. +ADJUST_NET_SRESTORE_BY_SCALING = False ! [Boolean] default = False + ! If true, adjustments to salt restoring to achieve zero net are made by scaling + ! values without moving the zero contour. +ADJUST_NET_FRESH_WATER_TO_ZERO = False ! [Boolean] default = False + ! If true, adjusts the net fresh-water forcing seen by the ocean (including + ! restoring) to zero. +ADJUST_NET_FRESH_WATER_BY_SCALING = False ! [Boolean] default = False + ! If true, adjustments to net fresh water to achieve zero net are made by + ! scaling values without moving the zero contour. +ICE_SALT_CONCENTRATION = 0.005 ! [kg/kg] default = 0.005 + ! The assumed sea-ice salinity needed to reverse engineer the melt flux (or + ! ice-ocean fresh-water flux). +USE_LIMITED_PATM_SSH = True ! [Boolean] default = True + ! If true, return the sea surface height with the correction for the atmospheric + ! (and sea-ice) pressure limited by max_p_surf instead of the full atmospheric + ! pressure. +APPROX_NET_MASS_SRC = False ! [Boolean] default = False + ! If true, use the net mass sources from the ice-ocean boundary type without any + ! further adjustments to drive the ocean dynamics. The actual net mass source + ! may differ due to internal corrections. +WIND_STAGGER = "C" ! default = "C" + ! A case-insensitive character string to indicate the staggering of the input + ! wind stress field. Valid values are 'A', 'B', or 'C'. +WIND_STRESS_MULTIPLIER = 1.0 ! [nondim] default = 1.0 + ! A factor multiplying the wind-stress given to the ocean by the coupler. This + ! is used for testing and should be =1.0 for any production runs. +CD_TIDES = 0.0018 ! [nondim] default = 1.0E-04 + ! The drag coefficient that applies to the tides. +READ_TIDEAMP = False ! [Boolean] default = False + ! If true, read a file (given by TIDEAMP_FILE) containing the tidal amplitude + ! with INT_TIDE_DISSIPATION. +UTIDE = 0.0 ! [m s-1] default = 0.0 + ! The constant tidal amplitude used with INT_TIDE_DISSIPATION. +READ_GUST_2D = False ! [Boolean] default = False + ! If true, use a 2-dimensional gustiness supplied from an input file +GUST_CONST = 0.0 ! [Pa] default = 0.0 + ! The background gustiness in the winds. +SURFACE_FORCING_ANSWER_DATE = 99991231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the gustiness + ! calculations. Values below 20190101 recover the answers from the end of 2018, + ! while higher values use a simpler expression to calculate gustiness. +USTAR_GUSTLESS_BUG = False ! [Boolean] default = False + ! If true include a bug in the time-averaging of the gustless wind friction + ! velocity +USE_RIGID_SEA_ICE = True ! [Boolean] default = False + ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that + ! resist vertical motion. +SEA_ICE_MEAN_DENSITY = 900.0 ! [kg m-3] default = 900.0 + ! A typical density of sea ice, used with the kinematic viscosity, when + ! USE_RIGID_SEA_ICE is true. +SEA_ICE_VISCOSITY = 1.0E+09 ! [m2 s-1] default = 1.0E+09 + ! The kinematic viscosity of sufficiently thick sea ice for use in calculating + ! the rigidity of sea ice. +SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 + ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit + ! rigidity +ALLOW_ICEBERG_FLUX_DIAGNOSTICS = False ! [Boolean] default = False + ! If true, makes available diagnostics of fluxes from icebergs as seen by MOM6. +ALLOW_FLUX_ADJUSTMENTS = False ! [Boolean] default = False + ! If true, allows flux adjustments to specified via the data_table using the + ! component name 'OCN'. + +! === module MOM_restart === +USE_WAVES = False ! [Boolean] default = False + ! If true, enables surface wave modules. +WAVE_INTERFACE_ANSWER_DATE = 20221231 ! default = 20221231 + ! The vintage of the order of arithmetic and expressions in the surface wave + ! calculations. Values below 20230101 recover the answers from the end of 2022, + ! while higher values use updated and more robust forms of the same expressions: + ! < 20230101 - Original answers for wave interface routines + ! >= 20230101 - More robust expressions for Update_Stokes_Drift + ! >= 20230102 - More robust expressions for get_StokesSL_LiFoxKemper + ! >= 20230103 - More robust expressions for ust_2_u10_coare3p5 +LA_DEPTH_RATIO = 0.2 ! [nondim] default = 0.04 + ! The depth (normalized by BLD) to average Stokes drift over in Langmuir number + ! calculation, where La = sqrt(ust/Stokes). +LA_DEPTH_MIN = 0.1 ! [m] default = 0.1 + ! The minimum depth over which to average the Stokes drift in the Langmuir + ! number calculation. +VISCOSITY_AIR = 1.0E-06 ! [m2 s-1] default = 1.0E-06 + ! A typical viscosity of air at sea level, as used in wave calculations +VON_KARMAN_WAVES = 0.4 ! [nondim] default = 0.4 + ! The value the von Karman constant as used for surface wave calculations. +RHO_AIR = 1.225 ! [kg m-3] default = 1.225 + ! A typical density of air at sea level, as used in wave calculations +RHO_SFC_WAVES = 1035.0 ! [kg m-3] default = 1035.0 + ! A typical surface density of seawater, as used in wave calculations in + ! comparison with the density of air. The default is RHO_0. +WAVE_HEIGHT_SCALE_FACTOR = 0.0246 ! [s2 m-1] default = 0.0246 + ! A factor relating the square of the 10 m wind speed to the significant wave + ! height, with a default value based on the Pierson-Moskowitz spectrum. +CHARNOCK_MIN = 0.028 ! [nondim] default = 0.028 + ! The minimum value of the Charnock coefficient, which relates the square of the + ! air friction velocity divided by the gravitational acceleration to the wave + ! roughness length. +CHARNOCK_SLOPE_U10 = 0.0017 ! [s m-1] default = 0.0017 + ! The partial derivative of the Charnock coefficient with the 10 m wind speed. + ! Note that in eq. 13 of the Edson et al. 2013 describing the COARE 3.5 bulk + ! flux algorithm, this slope is given as 0.017. However, 0.0017 reproduces the + ! curve in their figure 6, so that is the default value used in MOM6. +CHARNOCK_0_WIND_INTERCEPT = -0.005 ! [nondim] default = -0.005 + ! The intercept of the fit for the Charnock coefficient in the limit of no wind. + ! Note that this can be negative because CHARNOCK_MIN will keep the final value + ! for the Charnock coefficient from being from being negative. + +! === module MOM_file_parser === +SEND_LOG_TO_STDOUT = False ! [Boolean] default = False + ! If true, all log messages are also sent to stdout. +DOCUMENT_FILE = "MOM_parameter_doc" ! default = "MOM_parameter_doc" + ! The basename for files where run-time parameters, their settings, units and + ! defaults are documented. Blank will disable all parameter documentation. +COMPLETE_DOCUMENTATION = True ! [Boolean] default = True + ! If true, all run-time parameters are documented in MOM_parameter_doc.all . +MINIMAL_DOCUMENTATION = True ! [Boolean] default = True + ! If true, non-default run-time parameters are documented in + ! MOM_parameter_doc.short . diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.debugging b/exps/NWA12.COBALT/MOM_parameter_doc.debugging new file mode 100644 index 000000000..a54ab8109 --- /dev/null +++ b/exps/NWA12.COBALT/MOM_parameter_doc.debugging @@ -0,0 +1,85 @@ +! This file was written by the model and records the debugging parameters used at run-time. + +! === module MOM_unit_scaling === +! Parameters for doing unit scaling of variables. +Z_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! depths and heights. Valid values range from -300 to 300. +L_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! lateral distances. Valid values range from -300 to 300. +T_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! time. Valid values range from -300 to 300. +R_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! density. Valid values range from -300 to 300. +Q_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! heat content. Valid values range from -300 to 300. +C_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! temperature. Valid values range from -300 to 300. +S_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! salinity. Valid values range from -300 to 300. + +! === module MOM === +VERBOSITY = 2 ! default = 2 + ! Integer controlling level of messaging + ! 0 = Only FATAL messages + ! 2 = Only FATAL, WARNING, NOTE [default] + ! 9 = All) +DO_UNIT_TESTS = False ! [Boolean] default = False + ! If True, exercises unit tests at model start up. +DEBUG = False ! [Boolean] default = False + ! If true, write out verbose debugging data. +DEBUG_TRUNCATIONS = False ! [Boolean] default = False + ! If true, calculate all diagnostics that are useful for debugging truncations. +ROTATE_INDEX = False ! [Boolean] default = False + ! Enable rotation of the horizontal indices. +DEBUG_CHKSUMS = False ! [Boolean] default = False + ! If true, checksums are performed on arrays in the various vec_chksum routines. +DEBUG_REDUNDANT = False ! [Boolean] default = False + ! If true, debug redundant data points during calls to the various vec_chksum + ! routines. + +! === module MOM_verticalGrid === +! Parameters providing information about the vertical grid. +H_RESCALE_POWER = 0 ! [nondim] default = 0 + ! An integer power of 2 that is used to rescale the model's intenal units of + ! thickness. Valid values range from -300 to 300. + +! === module MOM_vert_friction === +U_TRUNC_FILE = "" ! default = "" + ! The absolute path to a file into which the accelerations leading to zonal + ! velocity truncations are written. Undefine this for efficiency if this + ! diagnostic is not needed. +V_TRUNC_FILE = "" ! default = "" + ! The absolute path to a file into which the accelerations leading to meridional + ! velocity truncations are written. Undefine this for efficiency if this + ! diagnostic is not needed. + +! === module MOM_barotropic === +DEBUG_BT = False ! [Boolean] default = False + ! If true, write out verbose debugging data within the barotropic time-stepping + ! loop. The data volume can be quite large if this is true. + +! === module MOM_diabatic_driver === +! The following parameters are used for diabatic processes. +DEBUG_CONSERVATION = False ! [Boolean] default = False + ! If true, monitor conservation and extrema. + +! === module MOM_kappa_shear === +! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 + +! === module MOM_surface_forcing === +CHECK_NO_LAND_FLUXES = False ! [Boolean] default = False + ! If true, checks that values from IOB fluxes are zero above land points (i.e. + ! G%mask2dT = 0). + +! === module MOM_file_parser === +REPORT_UNUSED_PARAMS = True ! [Boolean] default = True + ! If true, report any parameter lines that are not used in the run. +FATAL_UNUSED_PARAMS = False ! [Boolean] default = False + ! If true, kill the run if there are any unused parameters. diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.layout b/exps/NWA12.COBALT/MOM_parameter_doc.layout new file mode 100644 index 000000000..ad69d3ad5 --- /dev/null +++ b/exps/NWA12.COBALT/MOM_parameter_doc.layout @@ -0,0 +1,69 @@ +! This file was written by the model and records the layout parameters used at run-time. + +! === module MOM === +GLOBAL_INDEXING = False ! [Boolean] default = False + ! If true, use a global lateral indexing convention, so that corresponding + ! points on different processors have the same index. This does not work with + ! static memory. + +! === module MOM_domains === +!SYMMETRIC_MEMORY_ = True ! [Boolean] + ! If defined, the velocity point data domain includes every face of the + ! thickness points. In other words, some arrays are larger than others, + ! depending on where they are on the staggered grid. Also, the starting index + ! of the velocity-point arrays is usually 0, not 1. This can only be set at + ! compile time. +NONBLOCKING_UPDATES = False ! [Boolean] default = False + ! If true, non-blocking halo updates may be used. +THIN_HALO_UPDATES = True ! [Boolean] default = True + ! If true, optional arguments may be used to specify the width of the halos that + ! are updated with each call. +!STATIC_MEMORY_ = False ! [Boolean] + ! If STATIC_MEMORY_ is defined, the principle variables will have sizes that are + ! statically determined at compile time. Otherwise the sizes are not determined + ! until run time. The STATIC option is substantially faster, but does not allow + ! the PE count to be changed at run time. This can only be set at compile time. +AUTO_MASKTABLE = False ! [Boolean] default = False + ! Turn on automatic mask table generation to eliminate land blocks. +MASKTABLE = "MOM_mask_table" ! default = "MOM_mask_table" + ! A text file to specify n_mask, layout and mask_list. This feature masks out + ! processors that contain only land points. The first line of mask_table is the + ! number of regions to be masked out. The second line is the layout of the model + ! and must be consistent with the actual model layout. The following (n_mask) + ! lines give the logical positions of the processors that are masked out. The + ! mask_table can be created by tools like check_mask. The following example of + ! mask_table masks out 2 processors, (1,2) and (3,6), out of the 24 in a 4x6 + ! layout: + ! 2 + ! 4,6 + ! 1,2 + ! 3,6 +NIPROC = 20 ! + ! The number of processors in the x-direction. With STATIC_MEMORY_ this is set + ! in MOM_memory.h at compile time. +NJPROC = 20 ! + ! The number of processors in the y-direction. With STATIC_MEMORY_ this is set + ! in MOM_memory.h at compile time. +LAYOUT = 20, 20 ! + ! The processor layout that was actually used. +IO_LAYOUT = 1, 1 ! default = 1 + ! The processor layout to be used, or 0,0 to automatically set the io_layout to + ! be the same as the layout. + +! === module MOM_grid === +! Parameters providing information about the lateral grid. +NIBLOCK = 1 ! default = 1 + ! The number of blocks in the x-direction on each processor (for openmp). +NJBLOCK = 1 ! default = 1 + ! The number of blocks in the y-direction on each processor (for openmp). + +! === module MOM_barotropic === +BT_USE_WIDE_HALOS = True ! [Boolean] default = True + ! If true, use wide halos and march in during the barotropic time stepping for + ! efficiency. +BTHALO = 0 ! default = 0 + ! The minimum halo size for the barotropic solver. +!BT x-halo = 4 ! + ! The barotropic x-halo size that is actually used. +!BT y-halo = 4 ! + ! The barotropic y-halo size that is actually used. diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.short b/exps/NWA12.COBALT/MOM_parameter_doc.short new file mode 100644 index 000000000..413ea2828 --- /dev/null +++ b/exps/NWA12.COBALT/MOM_parameter_doc.short @@ -0,0 +1,692 @@ +! This file was written by the model and records the non-default parameters used at run-time. + +! === module MOM === +DIABATIC_FIRST = True ! [Boolean] default = False + ! If true, apply diabatic and thermodynamic processes, including buoyancy + ! forcing and mass gain or loss, before stepping the dynamics forward. +USE_REGRIDDING = True ! [Boolean] default = False + ! If True, use the ALE algorithm (regridding/remapping). If False, use the + ! layered isopycnal algorithm. +DT = 400.0 ! [s] + ! The (baroclinic) dynamics time step. The time-step that is actually used will + ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode + ! or the coupling timestep in coupled mode.) +DT_THERM = 1200.0 ! [s] default = 400.0 + ! The thermodynamic and tracer advection time step. Ideally DT_THERM should be + ! an integer multiple of DT and less than the forcing or coupling time-step, + ! unless THERMO_SPANS_COUPLING is true, in which case DT_THERM can be an integer + ! multiple of the coupling timestep. By default DT_THERM is set to DT. +FRAZIL = True ! [Boolean] default = False + ! If true, water freezes if it gets too cold, and the accumulated heat deficit + ! is returned in the surface state. FRAZIL is only used if + ! ENABLE_THERMODYNAMICS is true. +DO_GEOTHERMAL = True ! [Boolean] default = False + ! If true, apply geothermal heating. +BOUND_SALINITY = True ! [Boolean] default = False + ! If true, limit salinity to being positive. (The sea-ice model may ask for more + ! salt than is available and drive the salinity negative otherwise.) +C_P = 3992.0 ! [J kg-1 K-1] default = 3991.86795711963 + ! The heat capacity of sea water, approximated as a constant. This is only used + ! if ENABLE_THERMODYNAMICS is true. The default value is from the TEOS-10 + ! definition of conservative temperature. +WRITE_GEOM = 0 ! default = 1 + ! If =0, never write the geometry and vertical grid files. If =1, write the + ! geometry and vertical grid files only for a new simulation. If =2, always + ! write the geometry and vertical grid files. Other values are invalid. + +! === module MOM_domains === +REENTRANT_X = False ! [Boolean] default = True + ! If true, the domain is zonally reentrant. +NIGLOBAL = 775 ! + ! The total number of thickness grid points in the x-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. +NJGLOBAL = 845 ! + ! The total number of thickness grid points in the y-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in MOM_memory.h at compile time. + +! === module MOM_fixed_initialization === +INPUTDIR = "INPUT" ! default = "." + ! The directory in which input files are found. + +! === module MOM_grid_init === +GRID_CONFIG = "mosaic" ! + ! A character string that determines the method for defining the horizontal + ! grid. Current options are: + ! mosaic - read the grid from a mosaic (supergrid) + ! file set by GRID_FILE. + ! cartesian - use a (flat) Cartesian grid. + ! spherical - use a simple spherical grid. + ! mercator - use a Mercator spherical grid. +GRID_FILE = "ocean_hgrid.nc" ! + ! Name of the file from which to read horizontal grid data. +TOPO_CONFIG = "file" ! + ! This specifies how bathymetry is specified: + ! file - read bathymetric information from the file + ! specified by (TOPO_FILE). + ! flat - flat bottom set to MAXIMUM_DEPTH. + ! bowl - an analytically specified bowl-shaped basin + ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. + ! spoon - a similar shape to 'bowl', but with an vertical + ! wall at the southern face. + ! halfpipe - a zonally uniform channel with a half-sine + ! profile in the meridional direction. + ! bbuilder - build topography from list of functions. + ! benchmark - use the benchmark test case topography. + ! Neverworld - use the Neverworld test case topography. + ! DOME - use a slope and channel configuration for the + ! DOME sill-overflow test case. + ! ISOMIP - use a slope and channel configuration for the + ! ISOMIP test case. + ! DOME2D - use a shelf and slope configuration for the + ! DOME2D gravity current/overflow test case. + ! Kelvin - flat but with rotated land mask. + ! seamount - Gaussian bump for spontaneous motion test case. + ! dumbbell - Sloshing channel with reservoirs on both ends. + ! shelfwave - exponential slope for shelfwave test case. + ! Phillips - ACC-like idealized topography used in the Phillips config. + ! dense - Denmark Strait-like dense water formation and overflow. + ! USER - call a user modified routine. +TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" + ! The file from which the bathymetry is read. +MINIMUM_DEPTH = 4.0 ! [m] default = 0.0 + ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is + ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is + ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than + ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. +MASKING_DEPTH = 1.0 ! [m] default = -9999.0 + ! The depth below which to mask points as land points, for which all fluxes are + ! zeroed out. MASKING_DEPTH is ignored if it has the special default value. +MAXIMUM_DEPTH = 6500.0 ! [m] + ! The maximum depth of the ocean. + +! === module MOM_open_boundary === +! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, +! if any. +OBC_NUMBER_OF_SEGMENTS = 3 ! default = 0 + ! The number of open boundary segments. +OBC_FREESLIP_VORTICITY = False ! [Boolean] default = True + ! If true, sets the normal gradient of tangential velocity to zero in the + ! relative vorticity on open boundaries. This cannot be true if another + ! OBC_XXX_VORTICITY option is True. +OBC_COMPUTED_VORTICITY = True ! [Boolean] default = False + ! If true, uses the external values of tangential velocity in the relative + ! vorticity on open boundaries. This cannot be true if another OBC_XXX_VORTICITY + ! option is True. +OBC_FREESLIP_STRAIN = False ! [Boolean] default = True + ! If true, sets the normal gradient of tangential velocity to zero in the strain + ! use in the stress tensor on open boundaries. This cannot be true if another + ! OBC_XXX_STRAIN option is True. +OBC_COMPUTED_STRAIN = True ! [Boolean] default = False + ! If true, sets the normal gradient of tangential velocity to zero in the strain + ! use in the stress tensor on open boundaries. This cannot be true if another + ! OBC_XXX_STRAIN option is True. +OBC_ZERO_BIHARMONIC = True ! [Boolean] default = False + ! If true, zeros the Laplacian of flow on open boundaries in the biharmonic + ! viscosity term. +OBC_RAMP_TIMESCALE = 2.0 ! [days] default = 1.0 + ! If RAMP_OBCS is true, this sets the ramping timescale. +OBC_TIDE_N_CONSTITUENTS = 10 ! default = 0 + ! Number of tidal constituents being added to the open boundary. +OBC_SEGMENT_001 = "J=0,I=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! + ! Documentation needs to be dynamic????? +OBC_SEGMENT_001_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 + ! Timescales in days for nudging along a segment, for inflow, then outflow. + ! Setting both to zero should behave like SIMPLE obcs for the baroclinic + ! velocities. +OBC_SEGMENT_002 = "J=N,I=N:0,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! + ! Documentation needs to be dynamic????? +OBC_SEGMENT_002_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 + ! Timescales in days for nudging along a segment, for inflow, then outflow. + ! Setting both to zero should behave like SIMPLE obcs for the baroclinic + ! velocities. +OBC_SEGMENT_003 = "I=N,J=0:N,FLATHER,ORLANSKI,NUDGED,ORLANSKI_TAN,NUDGED_TAN" ! + ! Documentation needs to be dynamic????? +OBC_SEGMENT_003_VELOCITY_NUDGING_TIMESCALES = 3.0, 360.0 ! [days] default = 0.0 + ! Timescales in days for nudging along a segment, for inflow, then outflow. + ! Setting both to zero should behave like SIMPLE obcs for the baroclinic + ! velocities. +OBC_TRACER_RESERVOIR_LENGTH_SCALE_OUT = 9000.0 ! [m] default = 0.0 + ! An effective length scale for restoring the tracer concentration at the + ! boundaries to externally imposed values when the flow is exiting the domain. +OBC_TRACER_RESERVOIR_LENGTH_SCALE_IN = 9000.0 ! [m] default = 0.0 + ! An effective length scale for restoring the tracer concentration at the + ! boundaries to values from the interior when the flow is entering the domain. +BRUSHCUTTER_MODE = True ! [Boolean] default = False + ! If true, read external OBC data on the supergrid. +OBC_TIDE_CONSTITUENTS = "M2,S2,N2,K2,K1,O1,P1,Q1,MM,MF" ! + ! Names of tidal constituents being added to the open boundaries. +OBC_TIDE_ADD_EQ_PHASE = True ! [Boolean] default = False + ! If true, add the equilibrium phase argument to the specified tidal phases. +OBC_TIDE_ADD_NODAL = True ! [Boolean] default = False + ! If true, include 18.6 year nodal modulation in the boundary tidal forcing. +OBC_TIDE_REF_DATE = 1993, 1, 1 ! + ! Reference date to use for tidal calculations and equilibrium phase. +OBC_TIDE_NODAL_REF_DATE = 1993, 7, 2 ! default = 0 + ! Fixed reference date to use for nodal modulation of boundary tides. + +! === module MOM_verticalGrid === +! Parameters providing information about the vertical grid. +NK = 75 ! [nondim] + ! The number of model layers. + +! === module MOM_EOS === +EQN_OF_STATE = "WRIGHT_FULL" ! default = "WRIGHT" + ! EQN_OF_STATE determines which ocean equation of state should be used. + ! Currently, the valid choices are "LINEAR", "UNESCO", "JACKETT_MCD", "WRIGHT", + ! "WRIGHT_REDUCED", "WRIGHT_FULL", "NEMO", "ROQUET_RHO", "ROQUET_SPV" and + ! "TEOS10". This is only used if USE_EOS is true. +DTFREEZE_DP = -7.75E-08 ! [degC Pa-1] default = 0.0 + ! When TFREEZE_FORM=LINEAR, this is the derivative of the freezing potential + ! temperature with pressure. + +! === module MOM_restart === +MAX_FIELDS = 500 ! default = 100 + ! The maximum number of restart fields that can be used. + +! === module MOM_tracer_flow_control === +USE_generic_tracer = True ! [Boolean] default = False + ! If true and _USE_GENERIC_TRACER is defined as a preprocessor macro, use the + ! MOM_generic_tracer packages. + +! === module register_MOM_generic_tracer === +GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc" ! default = "" + ! The file in which the generic tracer initial values can be found, or an empty + ! string for internal initialization. + +! === module MOM_boundary_update === + +! === module segment_tracer_registry_init === + +! === module MOM_coord_initialization === +COORD_CONFIG = "ALE" ! default = "none" + ! This specifies how layers are to be defined: + ! ALE or none - used to avoid defining layers in ALE mode + ! file - read coordinate information from the file + ! specified by (COORD_FILE). + ! BFB - Custom coords for buoyancy-forced basin case + ! based on SST_S, T_BOT and DRHO_DT. + ! linear - linear based on interfaces not layers + ! layer_ref - linear based on layer densities + ! ts_ref - use reference temperature and salinity + ! ts_range - use range of temperature and salinity + ! (T_REF and S_REF) to determine surface density + ! and GINT calculate internal densities. + ! gprime - use reference density (RHO_0) for surface + ! density and GINT calculate internal densities. + ! ts_profile - use temperature and salinity profiles + ! (read from COORD_FILE) to set layer densities. + ! USER - call a user modified routine. +REGRIDDING_COORDINATE_MODE = "Z*" ! default = "LAYER" + ! Coordinate mode for vertical regridding. Choose among the following + ! possibilities: LAYER - Isopycnal or stacked shallow water layers + ! ZSTAR, Z* - stretched geopotential z* + ! SIGMA_SHELF_ZSTAR - stretched geopotential z* ignoring shelf + ! SIGMA - terrain following coordinates + ! RHO - continuous isopycnal + ! HYCOM1 - HyCOM-like hybrid coordinate + ! HYBGEN - Hybrid coordinate from the Hycom hybgen code + ! ADAPTIVE - optimize for smooth neutral density surfaces +ALE_COORDINATE_CONFIG = "FILE:vgrid_75_2m.nc,dz" ! default = "UNIFORM" + ! Determines how to specify the coordinate resolution. Valid options are: + ! PARAM - use the vector-parameter ALE_RESOLUTION + ! UNIFORM[:N] - uniformly distributed + ! FILE:string - read from a file. The string specifies + ! the filename and variable name, separated + ! by a comma or space, e.g. FILE:lev.nc,dz + ! or FILE:lev.nc,interfaces=zw + ! WOA09[:N] - the WOA09 vertical grid (approximately) + ! FNC1:string - FNC1:dz_min,H_total,power,precision + ! HYBRID:string - read from a file. The string specifies + ! the filename and two variable names, separated + ! by a comma or space, for sigma-2 and dz. e.g. + ! HYBRID:vgrid.nc,sigma2,dz +!ALE_RESOLUTION = 4*2.0, 2*2.01, 2.02, 2.03, 2.05, 2.08, 2.11, 2.15, 2.2, 2.27, 2.34, 2.44, 2.55, 2.69, 2.85, 3.04, 3.27, 3.54, 3.85, 4.22, 4.66, 5.18, 5.79, 6.52, 7.37, 8.37, 9.55, 10.94, 12.57, 14.48, 16.72, 19.33, 22.36, 25.87, 29.91, 34.53, 39.79, 45.72, 52.37, 59.76, 67.89, 76.74, 86.29, 96.47, 107.2, 118.35, 129.81, 141.42, 153.01, 164.41, 175.47, 186.01, 195.9, 205.01, 213.27, 220.6, 226.99, 232.43, 236.96, 240.63, 243.52, 245.72, 247.33, 248.45, 249.18, 249.62, 249.86, 249.96, 249.99, 2*250.0 ! [m] + ! The distribution of vertical resolution for the target + ! grid used for Eulerian-like coordinates. For example, + ! in z-coordinate mode, the parameter is a list of level + ! thicknesses (in m). In sigma-coordinate mode, the list + ! is of non-dimensional fractions of the water column. +MIN_THICKNESS = 1.0E-06 ! [m] default = 0.001 + ! When regridding, this is the minimum layer thickness allowed. +REMAPPING_SCHEME = "PPM_H4" ! default = "PLM" + ! This sets the reconstruction scheme used for vertical remapping for all + ! variables. It can be one of the following schemes: + ! PCM (1st-order accurate) + ! PLM (2nd-order accurate) + ! PLM_HYBGEN (2nd-order accurate) + ! PPM_H4 (3rd-order accurate) + ! PPM_IH4 (3rd-order accurate) + ! PPM_HYBGEN (3rd-order accurate) + ! WENO_HYBGEN (3rd-order accurate) + ! PQM_IH4IH3 (4th-order accurate) + ! PQM_IH6IH5 (5th-order accurate) + +! === module MOM_state_initialization === +OBC_SEGMENT_001_DATA = "U=file:uv_001.nc(u),V=file:uv_001.nc(v),SSH=file:zos_001.nc(zos),TEMP=file:thetao_001.nc(thetao),SALT=file:so_001.nc(so),Uamp=file:tu_001.nc(uamp),Uphase=file:tu_001.nc(uphase),Vamp=file:tu_001.nc(vamp),Vphase=file:tu_001.nc(vphase),SSHamp=file:tz_001.nc(zamp),SSHphase=file:tz_001.nc(zphase)" ! + ! OBC segment docs +OBC_SEGMENT_002_DATA = "U=file:uv_002.nc(u),V=file:uv_002.nc(v),SSH=file:zos_002.nc(zos),TEMP=file:thetao_002.nc(thetao),SALT=file:so_002.nc(so),Uamp=file:tu_002.nc(uamp),Uphase=file:tu_002.nc(uphase),Vamp=file:tu_002.nc(vamp),Vphase=file:tu_002.nc(vphase),SSHamp=file:tz_002.nc(zamp),SSHphase=file:tz_002.nc(zphase)" ! + ! OBC segment docs +OBC_SEGMENT_003_DATA = "U=file:uv_003.nc(u),V=file:uv_003.nc(v),SSH=file:zos_003.nc(zos),TEMP=file:thetao_003.nc(thetao),SALT=file:so_003.nc(so),Uamp=file:tu_003.nc(uamp),Uphase=file:tu_003.nc(uphase),Vamp=file:tu_003.nc(vamp),Vphase=file:tu_003.nc(vphase),SSHamp=file:tz_003.nc(zamp),SSHphase=file:tz_003.nc(zphase)" ! + ! OBC segment docs + +! === module MOM_diag_mediator === +DIAG_COORD_DEF_Z = "FILE:diag_dz.nc,dz" ! default = "WOA09" + ! Determines how to specify the coordinate resolution. Valid options are: + ! PARAM - use the vector-parameter DIAG_COORD_RES_Z + ! UNIFORM[:N] - uniformly distributed + ! FILE:string - read from a file. The string specifies + ! the filename and variable name, separated + ! by a comma or space, e.g. FILE:lev.nc,dz + ! or FILE:lev.nc,interfaces=zw + ! WOA09[:N] - the WOA09 vertical grid (approximately) + ! FNC1:string - FNC1:dz_min,H_total,power,precision + ! HYBRID:string - read from a file. The string specifies + ! the filename and two variable names, separated + ! by a comma or space, for sigma-2 and dz. e.g. + ! HYBRID:vgrid.nc,sigma2,dz + +! === module MOM_lateral_mixing_coeffs === +USE_VARIABLE_MIXING = True ! [Boolean] default = False + ! If true, the variable mixing code will be called. This allows diagnostics to + ! be created even if the scheme is not used. If KHTR_SLOPE_CFF>0 or + ! KhTh_Slope_Cff>0, this is set to true regardless of what is in the parameter + ! file. +USE_STORED_SLOPES = True ! [Boolean] default = False + ! If true, the isopycnal slopes are calculated once and stored for re-use. This + ! uses more memory but avoids calling the equation of state more times than + ! should be necessary. + +! === module MOM_set_visc === +CHANNEL_DRAG = True ! [Boolean] default = False + ! If true, the bottom drag is exerted directly on each layer proportional to the + ! fraction of the bottom it overlies. +PRANDTL_TURB = 1.25 ! [nondim] default = 1.0 + ! The turbulent Prandtl number applied to shear instability. +HBBL = 10.0 ! [m] + ! The thickness of a bottom boundary layer with a viscosity increased by + ! KV_EXTRA_BBL if BOTTOMDRAGLAW is not defined, or the thickness over which + ! near-bottom velocities are averaged for the drag law if BOTTOMDRAGLAW is + ! defined but LINEAR_DRAG is not. +BBL_THICK_MIN = 0.1 ! [m] default = 0.0 + ! The minimum bottom boundary layer thickness that can be used with + ! BOTTOMDRAGLAW. This might be Kv/(cdrag*drag_bg_vel) to give Kv as the minimum + ! near-bottom viscosity. +KV = 1.0E-06 ! [m2 s-1] + ! The background kinematic viscosity in the interior. The molecular value, ~1e-6 + ! m2 s-1, may be used. + +! === module MOM_thickness_diffuse === +KHTH_MAX_CFL = 0.1 ! [nondimensional] default = 0.8 + ! The maximum value of the local diffusive CFL ratio that is permitted for the + ! thickness diffusivity. 1.0 is the marginally unstable value in a pure layered + ! model, but much smaller numbers (e.g. 0.1) seem to work better for ALE-based + ! models. + +! === module MOM_porous_barriers === + +! === module MOM_dynamics_split_RK2 === +TIDES = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing. + +! === module MOM_continuity_PPM === + +! === module MOM_CoriolisAdv === +CORIOLIS_EN_DIS = True ! [Boolean] default = False + ! If true, two estimates of the thickness fluxes are used to estimate the + ! Coriolis term, and the one that dissipates energy relative to the other one is + ! used. + +! === module MOM_self_attr_load === + +! === module MOM_tidal_forcing === +TIDE_M2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the M2 frequency. This is only used + ! if TIDES is true. +TIDE_S2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the S2 frequency. This is only used + ! if TIDES is true. +TIDE_N2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the N2 frequency. This is only used + ! if TIDES is true. +TIDE_K2 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the K2 frequency. This is only used + ! if TIDES is true. +TIDE_K1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the K1 frequency. This is only used + ! if TIDES is true. +TIDE_O1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the O1 frequency. This is only used + ! if TIDES is true. +TIDE_P1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the P1 frequency. This is only used + ! if TIDES is true. +TIDE_Q1 = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the Q1 frequency. This is only used + ! if TIDES is true. +TIDE_MF = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the MF frequency. This is only used + ! if TIDES is true. +TIDE_MM = True ! [Boolean] default = False + ! If true, apply tidal momentum forcing at the MM frequency. This is only used + ! if TIDES is true. +TIDE_REF_DATE = 1993, 1, 1 ! default = 0 + ! Year,month,day to use as reference date for tidal forcing. If not specified, + ! defaults to 0. +TIDE_USE_EQ_PHASE = True ! [Boolean] default = False + ! Correct phases by calculating equilibrium phase arguments for TIDE_REF_DATE. + +! === module MOM_PressureForce === + +! === module MOM_PressureForce_FV === +MASS_WEIGHT_IN_PRESSURE_GRADIENT = True ! [Boolean] default = False + ! If true, use mass weighting when interpolating T/S for integrals near the + ! bathymetry in FV pressure gradient calculations. + +! === module MOM_Zanna_Bolton === + +! === module MOM_hor_visc === +LAPLACIAN = True ! [Boolean] default = False + ! If true, use a Laplacian horizontal viscosity. +SMAGORINSKY_KH = True ! [Boolean] default = False + ! If true, use a Smagorinsky nonlinear eddy viscosity. +SMAG_LAP_CONST = 0.05 ! [nondim] default = 0.0 + ! The nondimensional Laplacian Smagorinsky constant, often 0.15. +AH_VEL_SCALE = 0.01 ! [m s-1] default = 0.0 + ! The velocity scale which is multiplied by the cube of the grid spacing to + ! calculate the biharmonic viscosity. The final viscosity is the largest of this + ! scaled viscosity, the Smagorinsky and Leith viscosities, and AH. + +! === module MOM_vert_friction === +DIRECT_STRESS = True ! [Boolean] default = False + ! If true, the wind stress is distributed over the topmost HMIX_STRESS of fluid + ! (like in HYCOM), and an added mixed layer viscosity or a physically based + ! boundary layer turbulence parameterization is not needed for stability. +HMIX_FIXED = 0.9 ! [m] + ! The prescribed depth over which the near-surface viscosity and diffusivity are + ! elevated when the bulk mixed layer is not used. +MAXVEL = 6.0 ! [m s-1] default = 3.0E+08 + ! The maximum velocity allowed before the velocity components are truncated. + +! === module MOM_barotropic === +BOUND_BT_CORRECTION = True ! [Boolean] default = False + ! If true, the corrective pseudo mass-fluxes into the barotropic solver are + ! limited to values that require less than maxCFL_BT_cont to be accommodated. +BT_PROJECT_VELOCITY = True ! [Boolean] default = False + ! If true, step the barotropic velocity first and project out the velocity + ! tendency by 1+BEBT when calculating the transport. The default (false) is to + ! use a predictor continuity step to find the pressure field, and then to do a + ! corrector continuity step using a weighted average of the old and new + ! velocities, with weights of (1-BEBT) and BEBT. +BT_NONLIN_STRESS = True ! [Boolean] default = False + ! If true, use the full depth of the ocean at the start of the barotropic step + ! when calculating the surface stress contribution to the barotropic + ! acclerations. Otherwise use the depth based on bathyT. +DYNAMIC_SURFACE_PRESSURE = True ! [Boolean] default = False + ! If true, add a dynamic pressure due to a viscous ice shelf, for instance. +TIDAL_SAL_FLATHER = True ! [Boolean] default = False + ! If true, then apply adjustments to the external gravity wave speed used with + ! the Flather OBC routine consistent with the barotropic solver. This applies to + ! cases with tidal forcing using the scalar self-attraction approximation. The + ! default is currently False in order to retain previous answers but should be + ! set to True for new experiments +SADOURNY = False ! [Boolean] default = True + ! If true, the Coriolis terms are discretized with the Sadourny (1975) energy + ! conserving scheme, otherwise the Arakawa & Hsu scheme is used. If the + ! internal deformation radius is not resolved, the Sadourny scheme should + ! probably be used. +BT_STRONG_DRAG = True ! [Boolean] default = False + ! If true, use a stronger estimate of the retarding effects of strong bottom + ! drag, by making it implicit with the barotropic time-step instead of implicit + ! with the baroclinic time-step and dividing by the number of barotropic steps. +LINEARIZED_BT_CORIOLIS = False ! [Boolean] default = True + ! If true use the bottom depth instead of the total water column thickness in + ! the barotropic Coriolis term calculations. +BEBT = 0.2 ! [nondim] default = 0.1 + ! BEBT determines whether the barotropic time stepping uses the forward-backward + ! time-stepping scheme or a backward Euler scheme. BEBT is valid in the range + ! from 0 (for a forward-backward treatment of nonrotating gravity waves) to 1 + ! (for a backward Euler treatment). In practice, BEBT must be greater than about + ! 0.05. +DTBT = -0.9 ! [s or nondim] default = -0.98 + ! The barotropic time step, in s. DTBT is only used with the split explicit time + ! stepping. To set the time step automatically based the maximum stable value + ! use 0, or a negative value gives the fraction of the stable value. Setting + ! DTBT to 0 is the same as setting it to -0.98. The value of DTBT that will + ! actually be used is an integer fraction of DT, rounding down. + +! === module MOM_mixed_layer_restrat === +MIXEDLAYER_RESTRAT = True ! [Boolean] default = False + ! If true, a density-gradient dependent re-stratifying flow is imposed in the + ! mixed layer. Can be used in ALE mode without restriction but in layer mode can + ! only be used if BULKMIXEDLAYER is true. +MLE% +%MLE +FOX_KEMPER_ML_RESTRAT_COEF = 1.0 ! [nondim] default = 0.0 + ! A nondimensional coefficient that is proportional to the ratio of the + ! deformation radius to the dominant lengthscale of the submesoscale mixed layer + ! instabilities, times the minimum of the ratio of the mesoscale eddy kinetic + ! energy to the large-scale geostrophic kinetic energy or 1 plus the square of + ! the grid spacing over the deformation radius, as detailed by Fox-Kemper et al. + ! (2010) +MLE_FRONT_LENGTH = 1500.0 ! [m] default = 0.0 + ! If non-zero, is the frontal-length scale used to calculate the upscaling of + ! buoyancy gradients that is otherwise represented by the parameter + ! FOX_KEMPER_ML_RESTRAT_COEF. If MLE_FRONT_LENGTH is non-zero, it is recommended + ! to set FOX_KEMPER_ML_RESTRAT_COEF=1.0. +MLE_USE_PBL_MLD = True ! [Boolean] default = False + ! If true, the MLE parameterization will use the mixed-layer depth provided by + ! the active PBL parameterization. If false, MLE will estimate a MLD based on a + ! density difference with the surface using the parameter MLE_DENSITY_DIFF. +MLE_MLD_DECAY_TIME = 2.592E+06 ! [s] default = 0.0 + ! The time-scale for a running-mean filter applied to the mixed-layer depth used + ! in the MLE restratification parameterization. When the MLD deepens below the + ! current running-mean the running-mean is instantaneously set to the current + ! MLD. + +! === module MOM_diagnostics === + +! === module MOM_diabatic_driver === +! The following parameters are used for diabatic processes. +USE_LEGACY_DIABATIC_DRIVER = False ! [Boolean] default = True + ! If true, use a legacy version of the diabatic subroutine. This is temporary + ! and is needed to avoid change in answers. +ENERGETICS_SFC_PBL = True ! [Boolean] default = False + ! If true, use an implied energetics planetary boundary layer scheme to + ! determine the diffusivity and viscosity in the surface boundary layer. +EPBL_IS_ADDITIVE = False ! [Boolean] default = True + ! If true, the diffusivity from ePBL is added to all other diffusivities. + ! Otherwise, the larger of kappa-shear and ePBL diffusivities are used. + +! === module MOM_geothermal === + +! === module MOM_set_diffusivity === +BBL_EFFIC = 0.0 ! [nondim] default = 0.2 + ! The efficiency with which the energy extracted by bottom drag drives BBL + ! diffusion. This is only used if BOTTOMDRAGLAW is true. +BBL_MIXING_AS_MAX = False ! [Boolean] default = True + ! If true, take the maximum of the diffusivity from the BBL mixing and the other + ! diffusivities. Otherwise, diffusivity from the BBL_mixing is simply added. + +! === module MOM_bkgnd_mixing === +! Adding static vertical background mixing coefficients +KD = 1.0E-06 ! [m2 s-1] default = 0.0 + ! The background diapycnal diffusivity of density in the interior. Zero or the + ! molecular value, ~1e-7 m2 s-1, may be used. +KD_MIN = 2.0E-07 ! [m2 s-1] default = 1.0E-08 + ! The minimum diapycnal diffusivity. +DOUBLE_DIFFUSION = True ! [Boolean] default = False + ! If true, increase diffusivites for temperature or salinity based on the + ! double-diffusive parameterization described in Large et al. (1994). + +! === module MOM_kappa_shear === +! Parameterization of shear-driven turbulence following Jackson, Hallberg and Legg, JPO 2008 +USE_JACKSON_PARAM = True ! [Boolean] default = False + ! If true, use the Jackson-Hallberg-Legg (JPO 2008) shear mixing + ! parameterization. +MAX_RINO_IT = 25 ! [nondim] default = 50 + ! The maximum number of iterations that may be used to estimate the Richardson + ! number driven mixing. + +! === module MOM_diabatic_aux === +! The following parameters are used for auxiliary diabatic processes. +PRESSURE_DEPENDENT_FRAZIL = True ! [Boolean] default = False + ! If true, use a pressure dependent freezing temperature when making frazil. The + ! default is false, which will be faster but is inappropriate with ice-shelf + ! cavities. +IGNORE_FLUXES_OVER_LAND = True ! [Boolean] default = False + ! If true, the model does not check if fluxes are being applied over land + ! points. This is needed when the ocean is coupled with ice shelves and sea ice, + ! since the sea ice mask needs to be different than the ocean mask to avoid sea + ! ice formation under ice shelves. This flag only works when use_ePBL = True. +DO_RIVERMIX = True ! [Boolean] default = False + ! If true, apply additional mixing wherever there is runoff, so that it is mixed + ! down to RIVERMIX_DEPTH if the ocean is that deep. +RIVERMIX_DEPTH = 5.0 ! [m] default = 0.0 + ! The depth to which rivers are mixed if DO_RIVERMIX is defined. +VAR_PEN_SW = True ! [Boolean] default = False + ! If true, use one of the CHL_A schemes specified by OPACITY_SCHEME to determine + ! the e-folding depth of incoming short wave radiation. +CHL_FROM_FILE = False ! [Boolean] default = True + ! If true, chl_a is read from a file. + +! === module MOM_energetic_PBL === +ML_OMEGA_FRAC = 0.001 ! [nondim] default = 0.0 + ! When setting the decay scale for turbulence, use this fraction of the absolute + ! rotation rate blended with the local value of f, as sqrt((1-of)*f^2 + + ! of*4*omega^2). +EPBL_ANSWER_DATE = 20231231 ! default = 99991231 + ! The vintage of the order of arithmetic and expressions in the energetic PBL + ! calculations. Values below 20190101 recover the answers from the end of 2018, + ! while higher values use updated and more robust forms of the same expressions. + ! Values below 20240101 use A**(1./3.) to estimate the cube root of A in several + ! expressions, while higher values use the integer root function cuberoot(A) and + ! therefore can work with scaled variables. +TKE_DECAY = 0.001 ! [nondim] default = 2.5 + ! TKE_DECAY relates the vertical rate of decay of the TKE available for + ! mechanical entrainment to the natural Ekman depth. +EPBL_MSTAR_SCHEME = "REICHL_H18" ! default = "CONSTANT" + ! EPBL_MSTAR_SCHEME selects the method for setting mstar. Valid values are: + ! CONSTANT - Use a fixed mstar given by MSTAR + ! OM4 - Use L_Ekman/L_Obukhov in the stabilizing limit, as in OM4 + ! REICHL_H18 - Use the scheme documented in Reichl & Hallberg, 2018. +MSTAR_CAP = 10.0 ! [nondim] default = -1.0 + ! If this value is positive, it sets the maximum value of mstar allowed in ePBL. + ! (This is not used if EPBL_MSTAR_SCHEME = CONSTANT). +RH18_MSTAR_CN3 = -6.0 ! [nondim] default = -5.0 + ! MSTAR_N coefficient 3 (exponential decay coefficient). The value of -5.0 is + ! given in RH18. Increasing this increases how quickly the value of MSTAR + ! decreases as Hf/ust increases. +NSTAR = 0.06 ! [nondim] default = 0.2 + ! The portion of the buoyant potential energy imparted by surface fluxes that is + ! available to drive entrainment at the base of mixed layer when that energy is + ! positive. +MSTAR_CONV_ADJ = 0.66 ! [nondim] default = 0.0 + ! Coefficient used for reducing mstar during convection due to reduction of + ! stable density gradient. +EPBL_TRANSITION_SCALE = 0.01 ! [nondim] default = 0.1 + ! A scale for the mixing length in the transition layer at the edge of the + ! boundary layer as a fraction of the boundary layer thickness. +EPBL_MLD_BISECTION = True ! [Boolean] default = False + ! If true, use bisection with the iterative determination of the self-consistent + ! mixed layer depth. Otherwise use the false position after a maximum and + ! minimum bound have been evaluated and the returned value or bisection before + ! this. +EPBL_MLD_MAX_ITS = 40 ! default = 20 + ! The maximum number of iterations that can be used to find a self-consistent + ! mixed layer depth. If EPBL_MLD_BISECTION is true, the maximum number + ! iteractions needed is set by Depth/2^MAX_ITS < EPBL_MLD_TOLERANCE. +MIX_LEN_EXPONENT = 1.0 ! [nondim] default = 2.0 + ! The exponent applied to the ratio of the distance to the MLD and the MLD depth + ! which determines the shape of the mixing length. This is only used if + ! USE_MLD_ITERATION is True. +EPBL_VEL_SCALE_SCHEME = "REICHL_H18" ! default = "CUBE_ROOT_TKE" + ! Selects the method for translating TKE into turbulent velocities. Valid values + ! are: + ! CUBE_ROOT_TKE - A constant times the cube root of remaining TKE. + ! REICHL_H18 - Use the scheme based on a combination of w* and v* as + ! documented in Reichl & Hallberg, 2018. +WSTAR_USTAR_COEF = 15.0 ! [nondim] default = 1.0 + ! A ratio relating the efficiency with which convectively released energy is + ! converted to a turbulent velocity, relative to mechanically forced TKE. Making + ! this larger increases the BL diffusivity +EPBL_VEL_SCALE_FACTOR = 0.5477 ! [nondim] default = 1.0 + ! An overall nondimensional scaling factor for wT. Making this larger increases + ! the PBL diffusivity. +VSTAR_SURF_FAC = 1.8258 ! [nondim] default = 1.2 + ! The proportionality times ustar to set vstar at the surface. +USE_LA_LI2016 = True ! [Boolean] default = False + ! A logical to use the Li et al. 2016 (submitted) formula to determine the + ! Langmuir number. +EPBL_LANGMUIR_SCHEME = "ADDITIVE" ! default = "NONE" + ! EPBL_LANGMUIR_SCHEME selects the method for including Langmuir turbulence. + ! Valid values are: + ! NONE - Do not do any extra mixing due to Langmuir turbulence + ! RESCALE - Use a multiplicative rescaling of mstar to account for Langmuir + ! turbulence + ! ADDITIVE - Add a Langmuir turblence contribution to mstar to other + ! contributions +LT_ENHANCE_COEF = 0.1056 ! [nondim] default = 0.447 + ! Coefficient for Langmuir enhancement of mstar +LT_ENHANCE_EXP = -1.0 ! [nondim] default = -1.33 + ! Exponent for Langmuir enhancementt of mstar +LT_MOD_LAC1 = 0.0 ! [nondim] default = -0.87 + ! Coefficient for modification of Langmuir number due to MLD approaching Ekman + ! depth. +LT_MOD_LAC4 = 0.8 ! [nondim] default = 0.95 + ! Coefficient for modification of Langmuir number due to ratio of Ekman to + ! stable Obukhov depth. +LT_MOD_LAC5 = 0.8 ! [nondim] default = 0.95 + ! Coefficient for modification of Langmuir number due to ratio of Ekman to + ! unstable Obukhov depth. + +! === module MOM_opacity === +PEN_SW_NBANDS = 3 ! default = 1 + ! The number of bands of penetrating shortwave radiation. + +! === module MOM_tracer_advect === +TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "PLM" + ! The horizontal transport scheme for tracers: + ! PLM - Piecewise Linear Method + ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) + ! PPM - Piecewise Parabolic Method (Colella-Woodward) + +! === module MOM_tracer_hor_diff === +CHECK_DIFFUSIVE_CFL = True ! [Boolean] default = False + ! If true, use enough iterations the diffusion to ensure that the diffusive + ! equivalent of the CFL limit is not violated. If false, always use the greater + ! of 1 or MAX_TR_DIFFUSION_CFL iteration. + +! === module MOM_sum_output === +CALCULATE_APE = False ! [Boolean] default = True + ! If true, calculate the available potential energy of the interfaces. Setting + ! this to false reduces the memory footprint of high-PE-count models + ! dramatically. +MAXTRUNC = 1000 ! [truncations save_interval-1] default = 0 + ! The run will be stopped, and the day set to a very large value if the velocity + ! is truncated more than MAXTRUNC times between energy saves. Set MAXTRUNC to 0 + ! to stop if there is any truncation of velocities. + +! === module ocean_stochastics_init === + +! === module ocean_model_init === + +! === module MOM_surface_forcing === +MAX_P_SURF = 0.0 ! [Pa] default = -1.0 + ! The maximum surface pressure that can be exerted by the atmosphere and + ! floating sea-ice or ice shelves. This is needed because the FMS coupling + ! structure does not limit the water that can be frozen out of the ocean and the + ! ice-ocean heat fluxes are treated explicitly. No limit is applied if a + ! negative value is used. +CD_TIDES = 0.0018 ! [nondim] default = 1.0E-04 + ! The drag coefficient that applies to the tides. +USE_RIGID_SEA_ICE = True ! [Boolean] default = False + ! If true, sea-ice is rigid enough to exert a nonhydrostatic pressure that + ! resist vertical motion. +SEA_ICE_RIGID_MASS = 100.0 ! [kg m-2] default = 1000.0 + ! The mass of sea-ice per unit area at which the sea-ice starts to exhibit + ! rigidity + +! === module MOM_restart === +LA_DEPTH_RATIO = 0.2 ! [nondim] default = 0.04 + ! The depth (normalized by BLD) to average Stokes drift over in Langmuir number + ! calculation, where La = sqrt(ust/Stokes). diff --git a/exps/NWA12.COBALT/SIS.available_diags b/exps/NWA12.COBALT/SIS.available_diags new file mode 100644 index 000000000..523a35311 --- /dev/null +++ b/exps/NWA12.COBALT/SIS.available_diags @@ -0,0 +1,426 @@ +"ice_model", "SH" [Unused] + ! long_name: sensible heat flux + ! units: W/m^2 +"ice_model", "LH" [Unused] + ! long_name: latent heat flux + ! units: W/m^2 +"ice_model", "SW" [Unused] + ! long_name: shortwave heat flux + ! units: W/m^2 +"ice_model", "LW" [Unused] + ! long_name: longwave heat flux over ice + ! units: W/m^2 +"ice_model", "SNOWFL" [Unused] + ! long_name: rate of snow fall + ! units: kg/(m^2*s) +"ice_model", "RAIN" [Unused] + ! long_name: rate of rain fall + ! units: kg/(m^2*s) +"ice_model", "RUNOFF" [Unused] + ! long_name: liquid runoff + ! units: kg/(m^2*s) +"ice_model", "CALVING" [Unused] + ! long_name: frozen runoff + ! units: kg/(m^2*s) +"ice_model", "RUNOFF_HFLX" [Unused] + ! long_name: liquid runoff sensible heat flux + ! units: W/m^2 +"ice_model", "CALVING_HFLX" [Unused] + ! long_name: frozen runoff sensible heat flux + ! units: W/m^2 +"ice_model", "EVAP" [Unused] + ! long_name: evaporation + ! units: kg/(m^2*s) +"ice_model", "SALTF" [Unused] + ! long_name: ice to ocean salt flux + ! units: kg/(m^2*s) +"ice_model", "TMELT" [Unused] + ! long_name: upper surface melting energy flux + ! units: W/m^2 +"ice_model", "BMELT" [Unused] + ! long_name: bottom surface melting energy flux + ! units: W/m^2 +"ice_model", "BHEAT" [Unused] + ! long_name: ocean to ice heat flux + ! units: W/m^2 +"ice_model", "SWDN" [Unused] + ! long_name: Downward shortwave heat flux at the bottom of the atmosphere + ! units: W/m^2 +"ice_model", "ALB" [Unused] + ! long_name: Shortwave flux weighted surface albedo, or 1 if no SW + ! units: 0-1 +"ice_model", "SW_VIS" [Unused] + ! long_name: visible shortwave heat flux + ! units: W/m^2 +"ice_model", "SW_DIR" [Unused] + ! long_name: direct shortwave heat flux + ! units: W/m^2 +"ice_model", "SW_DIF" [Unused] + ! long_name: diffuse shortwave heat flux + ! units: W/m^2 +"ice_model", "SW_VIS_DIR" [Unused] + ! long_name: visible direct shortwave heat flux + ! units: W/m^2 +"ice_model", "SW_VIS_DIF" [Unused] + ! long_name: visible diffuse shortwave heat flux + ! units: W/m^2 +"ice_model", "SW_NIR_DIR" [Unused] + ! long_name: near IR direct shortwave heat flux + ! units: W/m^2 +"ice_model", "SW_NIR_DIF" [Unused] + ! long_name: near IR diffuse shortwave heat flux + ! units: W/m^2 +"ice_model", "EVAP_T0" [Unused] + ! long_name: evaporation at 0 degC + ! units: kg/(m^2*s) +"ice_model", "LW_T0" [Unused] + ! long_name: net downward longwave heat flux over ice at 0 degC + ! units: W/m^2 +"ice_model", "SH_T0" [Unused] + ! long_name: sensible heat flux at 0 degC + ! units: W/m^2 +"ice_model", "dEVAP_dT" [Unused] + ! long_name: partial derivative of evaporation with ice skin temperature + ! units: kg/(m^2*s*K) +"ice_model", "dLW_dT" [Unused] + ! long_name: partial derivative of net downward longwave heat flux with ice skin temperature + ! units: W/(m^2*K) +"ice_model", "dSH_dT" [Unused] + ! long_name: partial derivative of sensible heat flux with ice skin temperature + ! units: W/(m^2*K) +"ice_model", "TS_CAT" [Unused] + ! long_name: surface temperature by category + ! units: C +"ice_model", "EVAP_CAT" [Unused] + ! long_name: evaporation by category + ! units: kg/(m^2*s) +"ice_model", "LW_CAT" [Unused] + ! long_name: longwave heat flux by category + ! units: W/m^2 +"ice_model", "SH_CAT" [Unused] + ! long_name: sensible heat flux by category + ! units: W/m^2 +"ice_model", "TS" [Unused] + ! long_name: surface temperature + ! units: C +"ice_model", "sitemptop" [Unused] + ! long_name: surface temperature + ! units: C +"ice_model", "sitemptop_CMOR" [Unused] + ! long_name: Surface Temperature of Sea ice + ! units: Kelvin + ! standard_name: SeaIceSurfaceTemperature +"ice_model", "SLP" [Unused] + ! long_name: sea level pressure + ! units: Pa +"ice_model", "SST" [Unused] + ! long_name: sea surface temperature + ! units: deg-C +"ice_model", "SSS" [Unused] + ! long_name: sea surface salinity + ! units: psu +"ice_model", "SSH" [Unused] + ! long_name: sea surface height + ! units: m +"ice_model", "UO" [Unused] + ! long_name: surface current - x component + ! units: m/s +"ice_model", "VO" [Unused] + ! long_name: surface current - y component + ! units: m/s +"ice_model", "FRAZIL" [Unused] + ! long_name: energy flux of frazil formation + ! units: W/m^2 +"ice_model", "LSRC" [Unused] + ! long_name: frozen water local source + ! units: kg/(m^2*yr) +"ice_model", "LSNK" [Unused] + ! long_name: frozen water local sink + ! units: kg/(m^2*yr) +"ice_model", "BSNK" [Unused] + ! long_name: frozen water local bottom sink + ! units: kg/(m^2*yr) +"ice_model", "SN2IC" [Unused] + ! long_name: rate of snow to ice conversion + ! units: kg/(m^2*s) +"ice_model", "net_melt" [Unused] + ! long_name: net mass flux from ice & snow to ocean due to melting & freezing + ! units: kg m-2 s-1 +"ice_model", "fsitherm" [Unused] + ! long_name: water_flux_into_sea_water_due_to_sea_ice_thermodynamics + ! units: kg m-2 s-1 +"ice_model", "SIGI" [Unused] + ! long_name: first stress invariant + ! units: none +"ice_model", "SIGII" [Unused] + ! long_name: second stress invariant + ! units: none +"ice_model", "STRENGTH" [Unused] + ! long_name: ice strength + ! units: Pa*m +"ice_model", "STREN_0" [Unused] + ! long_name: ice strength at start of rheology + ! units: Pa*m +"ice_model", "FI_X" [Unused] + ! long_name: ice internal stress - x component + ! units: Pa +"ice_model", "FI_Y" [Unused] + ! long_name: ice internal stress - y component + ! units: Pa +"ice_model", "FC_X" [Unused] + ! long_name: Coriolis force - x component + ! units: Pa +"ice_model", "FC_Y" [Unused] + ! long_name: Coriolis force - y component + ! units: Pa +"ice_model", "Cor_ui" [Unused] + ! long_name: Coriolis ice acceleration - x component + ! units: m s-2 +"ice_model", "Cor_vi" [Unused] + ! long_name: Coriolis ice acceleration - y component + ! units: m s-2 +"ice_model", "FP_X" [Unused] + ! long_name: Pressure force - x component + ! units: Pa +"ice_model", "FP_Y" [Unused] + ! long_name: Pressure force - y component + ! units: Pa +"ice_model", "Pfa_ui" [Unused] + ! long_name: Pressure-force ice acceleration - x component + ! units: m s-2 +"ice_model", "Pfa_vi" [Unused] + ! long_name: Pressure-force ice acceleration - y component + ! units: m s-2 +"ice_model", "FW_X" [Unused] + ! long_name: water stress on ice - x component + ! units: Pa +"ice_model", "FW_Y" [Unused] + ! long_name: water stress on ice - y component + ! units: Pa +"ice_model", "FLF_X" [Unused] + ! long_name: land-fast bottom stress on ice - x component + ! units: Pa +"ice_model", "FLF_Y" [Unused] + ! long_name: land-fast bottom stress on ice - y component + ! units: Pa +"ice_model", "UI" [Unused] + ! long_name: ice velocity - x component + ! units: m/s +"ice_model", "VI" [Unused] + ! long_name: ice velocity - y component + ! units: m/s +"ice_model", "MIS_tot" [Unused] + ! long_name: Mass of ice and snow at t-points + ! units: kg m-2 +"ice_model", "CI_tot" [Unused] + ! long_name: Initial summed concentration of ice at t-points + ! units: nondim +"ice_model", "CI_proj" [Unused] + ! long_name: Projected summed concentration of ice at t-points + ! units: nondim +"ice_model", "MI_U" [Unused] + ! long_name: Mass of ice and snow at u-points + ! units: kg m-2 +"ice_model", "MI_V" [Unused] + ! long_name: Mass of ice and snow at v-points + ! units: kg m-2 +"ice_model", "FI_d_X" [Unused] + ! long_name: ice divergence internal stress - x component + ! units: Pa +"ice_model", "FI_d_Y" [Unused] + ! long_name: ice divergence internal stress - y component + ! units: Pa +"ice_model", "FI_t_X" [Unused] + ! long_name: ice tension internal stress - x component + ! units: Pa +"ice_model", "FI_t_Y" [Unused] + ! long_name: ice tension internal stress - y component + ! units: Pa +"ice_model", "FI_s_X" [Unused] + ! long_name: ice shearing internal stress - x component + ! units: Pa +"ice_model", "FI_s_Y" [Unused] + ! long_name: ice shearing internal stress - y component + ! units: Pa +"ice_model", "str_d" [Unused] + ! long_name: ice divergence internal stress + ! units: Pa m +"ice_model", "str_t" [Unused] + ! long_name: ice tension internal stress + ! units: Pa m +"ice_model", "str_s" [Unused] + ! long_name: ice shearing internal stress + ! units: Pa m +"ice_model", "sh_d" [Unused] + ! long_name: ice divergence strain rate + ! units: s-1 +"ice_model", "sh_t" [Unused] + ! long_name: ice tension strain rate + ! units: s-1 +"ice_model", "sh_s" [Unused] + ! long_name: ice shearing strain rate + ! units: s-1 +"ice_model", "del_sh" [Unused] + ! long_name: ice strain rate magnitude + ! units: s-1 +"ice_model", "del_sh_min" [Unused] + ! long_name: minimum ice strain rate magnitude + ! units: s-1 +"ice_model", "ui_hf" [Unused] + ! long_name: ice velocity - x component + ! units: m/s +"ice_model", "vi_hf" [Unused] + ! long_name: ice velocity - y component + ! units: m/s +"ice_model", "str_d_hf" [Unused] + ! long_name: ice divergence internal stress + ! units: Pa m +"ice_model", "str_t_hf" [Unused] + ! long_name: ice tension internal stress + ! units: Pa m +"ice_model", "str_s_hf" [Unused] + ! long_name: ice shearing internal stress + ! units: Pa m +"ice_model", "sh_d_hf" [Unused] + ! long_name: ice divergence rate + ! units: s-1 +"ice_model", "sh_t_hf" [Unused] + ! long_name: ice tension rate + ! units: s-1 +"ice_model", "sh_s_hf" [Unused] + ! long_name: ice shearing rate + ! units: s-1 +"ice_model", "sigI_hf" [Unused] + ! long_name: first stress invariant + ! units: none +"ice_model", "sigII_hf" [Unused] + ! long_name: second stress invariant + ! units: none +"ice_model", "CI_hf" [Unused] + ! long_name: Summed concentration of ice at t-points + ! units: nondim +"ice_model", "STRENGTH_hf" [Unused] + ! long_name: ice strength + ! units: Pa*m +"ice_model", "siu" [Unused] + ! long_name: ice velocity - x component + ! units: m/s +"ice_model", "siv" [Unused] + ! long_name: ice velocity - y component + ! units: m/s +"ice_model", "sispeed" [Unused] + ! long_name: ice speed + ! units: m/s +"ice_model", "IX_TRANS" [Unused] + ! long_name: x-direction ice transport + ! units: kg/s +"ice_model", "IY_TRANS" [Unused] + ! long_name: y-direction ice transport + ! units: kg/s +"ice_model", "XPRT" [Unused] + ! long_name: frozen water transport convergence + ! units: kg/(m^2*yr) +"ice_model", "RDG_RATE" [Unused] + ! long_name: ice ridging rate + ! units: 1/sec +"ice_model", "FA_X" [Unused] + ! long_name: Air stress on ice on C-grid - x component + ! units: Pa +"ice_model", "FA_Y" [Unused] + ! long_name: Air stress on ice on C-grid - y component + ! units: Pa +"ice_model", "EXT" [Unused] + ! long_name: ice modeled + ! units: 0 or 1 +"ice_model", "CN" [Unused] + ! long_name: ice concentration + ! units: 0-1 +"ice_model", "HP" [Unused] + ! long_name: pond thickness + ! units: m-pond +"ice_model", "HS" [Unused] + ! long_name: snow thickness + ! units: m-snow +"ice_model", "TSN" [Unused] + ! long_name: snow layer temperature + ! units: C +"ice_model", "HI" [Unused] + ! long_name: ice thickness + ! units: m-ice +"ice_model", "sitimefrac" [Unused] + ! long_name: time fraction of ice cover + ! units: 0-1 +"ice_model", "siconc" [Unused] + ! long_name: ice concentration + ! units: 0-1 +"ice_model", "siconc_CMOR" [Unused] + ! long_name: Sea-Ice Area Percentage + ! units: % + ! standard_name: SeaIceAreaFraction +"ice_model", "sithick" [Unused] + ! long_name: ice thickness + ! units: m-ice +"ice_model", "sivol" [Unused] + ! long_name: ice volume + ! units: m-ice +"ice_model", "sivol_CMOR" [Unused] + ! long_name: Sea-ice Volume per Area + ! units: m-ice +"ice_model", "sisnconc" [Unused] + ! long_name: snow concentration + ! units: 0-1 +"ice_model", "sisnconc_CMOR" [Unused] + ! long_name: Snow Area Percentage + ! units: % + ! standard_name: SurfaceSnowAreaFraction +"ice_model", "sisnthick" [Unused] + ! long_name: snow thickness + ! units: m-snow +"ice_model", "T_bulkice" [Unused] + ! long_name: Volume-averaged ice temperature + ! units: C +"ice_model", "S_bulkice" [Unused] + ! long_name: Volume-averaged ice salinity + ! units: g/kg +"ice_model", "T1" [Unused] + ! long_name: ice layer 1 temperature + ! units: C +"ice_model", "Sal1" [Unused] + ! long_name: ice layer 1 salinity + ! units: g/kg +"ice_model", "T2" [Unused] + ! long_name: ice layer 2 temperature + ! units: C +"ice_model", "Sal2" [Unused] + ! long_name: ice layer 2 salinity + ! units: g/kg +"ice_model", "T3" [Unused] + ! long_name: ice layer 3 temperature + ! units: C +"ice_model", "Sal3" [Unused] + ! long_name: ice layer 3 salinity + ! units: g/kg +"ice_model", "T4" [Unused] + ! long_name: ice layer 4 temperature + ! units: C +"ice_model", "Sal4" [Unused] + ! long_name: ice layer 4 salinity + ! units: g/kg +"ice_model", "MI" [Unused] + ! long_name: ice + snow mass + ! units: kg/m^2 +"ice_model", "simass" [Unused] + ! long_name: ice mass + ! units: kg/m^2 +"ice_model", "simass_n" [Unused] + ! long_name: ice mass + ! units: kg/m^2 +"ice_model", "sisnmass" [Unused] + ! long_name: snow mass + ! units: kg/m^2 +"ice_model", "MIB" [Unused] + ! long_name: ice + snow + bergs mass + ! units: kg/m^2 +"ice_model", "E2MELT" [Unused] + ! long_name: heat needed to melt ice + ! units: J/m^2 diff --git a/exps/NWA12.COBALT/SIS_fast.available_diags b/exps/NWA12.COBALT/SIS_fast.available_diags new file mode 100644 index 000000000..0b445a523 --- /dev/null +++ b/exps/NWA12.COBALT/SIS_fast.available_diags @@ -0,0 +1,57 @@ +"ice_model_fast", "SWDN" [Unused] + ! long_name: downward shortwave flux + ! units: W/m^2 +"ice_model_fast", "LWDN" [Unused] + ! long_name: downward longwave flux + ! units: W/m^2 +"ice_model_fast", "ALB" [Unused] + ! long_name: surface albedo + ! units: 0-1 +"ice_model_fast", "coszen" [Unused] + ! long_name: cosine of the solar zenith angle for the next radiation step + ! units: -1:1 +"ice_model_fast", "sw_abs_sfc" [Unused] + ! long_name: SW frac. abs. at the ice surface + ! units: 0-1 +"ice_model_fast", "sw_abs_snow" [Unused] + ! long_name: SW frac. abs. in snow + ! units: 0-1 +"ice_model_fast", "sw_abs_ice1" [Unused] + ! long_name: SW frac. abs. in ice layer 1 + ! units: 0:1 +"ice_model_fast", "sw_abs_ice2" [Unused] + ! long_name: SW frac. abs. in ice layer 2 + ! units: 0:1 +"ice_model_fast", "sw_abs_ice3" [Unused] + ! long_name: SW frac. abs. in ice layer 3 + ! units: 0:1 +"ice_model_fast", "sw_abs_ice4" [Unused] + ! long_name: SW frac. abs. in ice layer 4 + ! units: 0:1 +"ice_model_fast", "sw_pen" [Unused] + ! long_name: SW frac. pen. surf. + ! units: 0:1 +"ice_model_fast", "sw_abs_ocn" [Unused] + ! long_name: SW frac. sent to the ocean + ! units: 0:1 +"ice_model_fast", "alb_vis_dir" [Unused] + ! long_name: ice surface albedo vis_dir + ! units: 0-1 +"ice_model_fast", "alb_vis_dif" [Unused] + ! long_name: ice surface albedo vis_dif + ! units: 0-1 +"ice_model_fast", "alb_nir_dir" [Unused] + ! long_name: ice surface albedo nir_dir + ! units: 0-1 +"ice_model_fast", "alb_nir_dif" [Unused] + ! long_name: ice surface albedo nir_dif + ! units: 0-1 +"ice_model_fast", "Tskin" [Unused] + ! long_name: Skin temperature + ! units: degC +"ice_model_fast", "CN_fast" [Unused] + ! long_name: Category concentration + ! units: 0-1 +"ice_model_fast", "MI_fast" [Unused] + ! long_name: Category concentration + ! units: 0-1 diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.all b/exps/NWA12.COBALT/SIS_parameter_doc.all new file mode 100644 index 000000000..0a09fdf22 --- /dev/null +++ b/exps/NWA12.COBALT/SIS_parameter_doc.all @@ -0,0 +1,513 @@ +! This file was written by the model and records all non-layout or debugging parameters used at run-time. + +! === module ice_model === +SPECIFIED_ICE = False ! [Boolean] default = False + ! If true, the ice is specified and there is no dynamics. +CGRID_ICE_DYNAMICS = True ! [Boolean] default = True + ! If true, use a C-grid discretization of the sea-ice dynamics; if false use a + ! B-grid discretization. +USE_SLAB_ICE = False ! [Boolean] default = False + ! If true, use the very old slab-style ice. +SINGLE_ICE_STATE_TYPE = True ! [Boolean] default = True + ! If true, the fast and slow portions of the ice use a single common + ! ice_state_type. Otherwise they point to different ice_state_types that need + ! to be explicitly copied back and forth. +EULERIAN_TSURF = True ! [Boolean] default = True + ! If true, use previous calculations of the ice-top surface skin temperature for + ! tsurf at the start of atmospheric time stepping, including interpolating + ! between tsurf values from other categories in the same location. +ICE_OCEAN_STRESS_STAGGER = "C" ! default = "C" + ! A case-insensitive character string to indicate the staggering of the stress + ! field on the ocean that is returned to the coupler. Valid values include 'A', + ! 'B', or 'C', with a default that follows the value of CGRID_ICE_DYNAMICS. +RHO_OCEAN = 1030.0 ! [kg m-3] default = 1030.0 + ! The nominal density of sea water as used by SIS. +RHO_ICE = 905.0 ! [kg m-3] default = 905.0 + ! The nominal density of sea ice as used by SIS. +RHO_SNOW = 330.0 ! [kg m-3] default = 330.0 + ! The nominal density of snow as used by SIS. +G_EARTH = 9.8 ! [m s-2] default = 9.8 + ! The gravitational acceleration of the Earth. +MOMENTUM_ROUGH_ICE = 1.0E-04 ! [m] default = 1.0E-04 + ! The default momentum roughness length scale for the ocean. +HEAT_ROUGH_ICE = 1.0E-04 ! [m] default = 1.0E-04 + ! The default roughness length scale for the turbulent transfer of heat into the + ! ocean. +CONSTANT_COSZEN_IC = -1.0 ! [nondim] default = -1.0 + ! A constant value to use to initialize the cosine of the solar zenith angle for + ! the first radiation step, or a negative number to use the current time and + ! astronomy. +DT_RADIATION = 3600.0 ! [s] default = 3600.0 + ! The time step with which the shortwave radiation and fields like albedos are + ! updated. Currently this is only used to initialize albedos when there is no + ! restart file. +ICE_KMELT = 240.0 ! [W m-2 K-1] default = 240.0 + ! A constant giving the proportionality of the ocean/ice base heat flux to the + ! tempature difference, given by the product of the heat capacity per unit + ! volume of sea water times a molecular diffusive piston velocity. +ICE_BOUNDS_CHECK = True ! [Boolean] default = True + ! If true, periodically check the values of ice and snow temperatures and + ! thicknesses to ensure that they are sensible, and issue warnings if they are + ! not. This does not change answers, but can increase model run time. +FIRST_DIRECTION = 0 ! default = 0 + ! An integer that indicates which direction goes first in parts of the code that + ! use directionally split updates, with even numbers (or 0) used for x- first + ! and odd numbers used for y-first. +ICE_SEES_ATMOS_WINDS = True ! [Boolean] default = True + ! If true, the sea ice is being given wind stresses with the atmospheric sign + ! convention, and need to have their sign changed. +APPLY_SLP_TO_OCEAN = False ! [Boolean] default = False + ! If true, apply the atmospheric sea level pressure to the ocean. +PASS_STRESS_MAG_TO_OCEAN = False ! [Boolean] default = False + ! If true, provide the time and area weighted mean magnitude of the stresses on + ! the ocean to the ocean. +DO_ICEBERGS = False ! [Boolean] default = False + ! If true, call the iceberg module. +ADD_DIURNAL_SW = False ! [Boolean] default = False + ! If true, add a synthetic diurnal cycle to the shortwave radiation. +DO_SUN_ANGLE_FOR_ALB = False ! [Boolean] default = False + ! If true, find the sun angle for calculating the ocean albedo within the sea + ! ice model. +DO_RIDGING = False ! [Boolean] default = False + ! If true, call the ridging routines. +RESTARTFILE = "ice_model.res.nc" ! default = "ice_model.res.nc" + ! The name of the restart file. +FAST_ICE_RESTARTFILE = "ice_model.res.nc" ! default = "ice_model.res.nc" + ! The name of the restart file for those elements of the the sea ice that are + ! handled by the fast ice PEs. +APPLY_MASKS_AFTER_RESTART = True ! [Boolean] default = True + ! If true, applies masks to mH_ice,mH_snow and part_size after a restart. +WRITE_GEOM = 1 ! default = 1 + ! If =0, never write the geometry and vertical grid files. If =1, write the + ! geometry and vertical grid files only for a new simulation. If =2, always + ! write the geometry and vertical grid files. Other values are invalid. +INTERPOLATE_FLUXES = True ! [Boolean] default = True + ! If true, interpolate a linearized version of the fast fluxes into arealess + ! categories. +REDO_FAST_ICE_UPDATE = False ! [Boolean] default = False + ! If true, recalculate the thermal updates from the fast dynamics on the slowly + ! evolving ice state, rather than copying over the slow ice state to the fast + ! ice state. +READ_HLIM_VALS = False ! [Boolean] default = False + ! If true, read the lower limits on the ice thicknesscategories. +NCAT_ICE = 5 ! [nondim] default = 5 + ! The number of sea ice thickness categories. +NK_ICE = 4 ! [nondim] default = 4 + ! The number of layers within the sea ice. +NK_SNOW = 1 ! [nondim] default = 1 + ! The number of layers within the snow atop the sea ice. +MIN_OCEAN_PARTSIZE = 0.0 ! [nondim] default = 0.0 + ! The minimum value for the fractional open-ocean area. This can be 0, but for + ! some purposes it may be useful to set this to a miniscule value (like 1e-40) + ! that will be lost to roundoff during any sums so that the open ocean fluxes + ! can be used in with new categories. + +! === module MOM_domains === +REENTRANT_X = False ! [Boolean] default = True + ! If true, the domain is zonally reentrant. +REENTRANT_Y = False ! [Boolean] default = False + ! If true, the domain is meridionally reentrant. +TRIPOLAR_N = False ! [Boolean] default = False + ! Use tripolar connectivity at the northern edge of the domain. With + ! TRIPOLAR_N, NIGLOBAL must be even. +NIGLOBAL = 775 ! + ! The total number of thickness grid points in the x-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. +NJGLOBAL = 845 ! + ! The total number of thickness grid points in the y-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. +NIHALO = 4 ! default = 4 + ! The number of halo points on each side in the x-direction. How this is set + ! varies with the calling component and static or dynamic memory configuration. +NJHALO = 4 ! default = 4 + ! The number of halo points on each side in the y-direction. How this is set + ! varies with the calling component and static or dynamic memory configuration. + +! === module MOM_hor_index === +! Sets the horizontal array index types. + +! === module SIS_restart === +PARALLEL_RESTARTFILES = False ! [Boolean] default = False + ! If true, each processor writes its own restart file, otherwise a single + ! restart file is generated +MAX_FIELDS = 100 ! default = 100 + ! The maximum number of restart fields that can be used. +RESTART_CHECKSUMS_REQUIRED = True ! [Boolean] default = True + ! If true, require the restart checksums to match and error out otherwise. Users + ! may want to avoid this comparison if for example the restarts are made from a + ! run with a different mask_table than the current run, in which case the + ! checksums will not match. + +! === module SIS_initialize_fixed === +INPUTDIR = "INPUT" ! default = "." + ! The directory in which input files are found. + +! === module MOM_grid_init === +GRID_CONFIG = "mosaic" ! + ! A character string that determines the method for defining the horizontal + ! grid. Current options are: + ! mosaic - read the grid from a mosaic (supergrid) + ! file set by GRID_FILE. + ! cartesian - use a (flat) Cartesian grid. + ! spherical - use a simple spherical grid. + ! mercator - use a Mercator spherical grid. +GRID_FILE = "ocean_hgrid.nc" ! + ! Name of the file from which to read horizontal grid data. +USE_TRIPOLAR_GEOLONB_BUG = False ! [Boolean] default = False + ! If true, use older code that incorrectly sets the longitude in some points + ! along the tripolar fold to be off by 360 degrees. +RAD_EARTH = 6.378E+06 ! [m] default = 6.378E+06 + ! The radius of the Earth. +TOPO_CONFIG = "file" ! default = "file" + ! This specifies how bathymetry is specified: + ! file - read bathymetric information from the file + ! specified by (TOPO_FILE). + ! flat - flat bottom set to MAXIMUM_DEPTH. + ! bowl - an analytically specified bowl-shaped basin + ! ranging between MAXIMUM_DEPTH and MINIMUM_DEPTH. + ! spoon - a similar shape to 'bowl', but with a vertical + ! wall at the southern face. + ! halfpipe - a zonally uniform channel with a half-sine + ! profile in the meridional direction. +TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" + ! The file from which the bathymetry is read. +TOPO_VARNAME = "depth" ! default = "depth" + ! The name of the bathymetry variable in TOPO_FILE. +TOPO_EDITS_FILE = "" ! default = "" + ! The file from which to read a list of i,j,z topography overrides. +ALLOW_LANDMASK_CHANGES = False ! [Boolean] default = False + ! If true, allow topography overrides to change land mask. +MINIMUM_DEPTH = 0.0 ! [m] default = 0.0 + ! If MASKING_DEPTH is unspecified, then anything shallower than MINIMUM_DEPTH is + ! assumed to be land and all fluxes are masked out. If MASKING_DEPTH is + ! specified, then all depths shallower than MINIMUM_DEPTH but deeper than + ! MASKING_DEPTH are rounded to MINIMUM_DEPTH. +MASKING_DEPTH = -9999.0 ! [m] default = -9999.0 + ! The depth below which to mask points as land points, for which all fluxes are + ! zeroed out. MASKING_DEPTH is ignored if it has the special default value. +!MAXIMUM_DEPTH = 6857.396484375 ! [m] + ! The (diagnosed) maximum depth of the ocean. + +! === module SIS_open_boundary === +! Controls where open boundaries are located, what kind of boundary condition to impose, and what data to apply, +! if any. +OBC_NUMBER_OF_SEGMENTS = 0 ! default = 0 + ! The number of open boundary segments. +CHANNEL_CONFIG = "none" ! default = "none" + ! A parameter that determines which set of channels are restricted to specific + ! widths. Options are: + ! none - All channels have the grid width. + ! global_1deg - Sets 16 specific channels appropriate + ! for a 1-degree model, as used in CM2G. + ! list - Read the channel locations and widths from a + ! text file, like MOM_channel_list in the MOM_SIS + ! test case. + ! file - Read open face widths everywhere from a + ! NetCDF file on the model grid. +ROTATION = "2omegasinlat" ! default = "2omegasinlat" + ! This specifies how the Coriolis parameter is specified: + ! 2omegasinlat - Use twice the planetary rotation rate + ! times the sine of latitude. + ! betaplane - Use a beta-plane or f-plane. + ! USER - call a user modified routine. +OMEGA = 7.2921E-05 ! [s-1] default = 7.2921E-05 + ! The rotation rate of the earth. +GRID_ROTATION_ANGLE_BUGS = False ! [Boolean] default = False + ! If true, use an older algorithm to calculate the sine and cosines needed + ! rotate between grid-oriented directions and true north and east. Differences + ! arise at the tripolar fold. + +! === module hor_grid === +! Parameters providing information about the lateral grid. + +! === module MOM_hor_index === +! Sets the horizontal array index types. +SIS_AVAILABLE_DIAGS_FILE = "SIS.available_diags" ! default = "SIS.available_diags" + ! A file into which to write a list of all available sea ice diagnostics that + ! can be included in a diag_table. + +! === module SIS2_ice_thm (thermo) === +! This sub-module calculates ice thermodynamic quantities. +LATENT_HEAT_FUSION = 3.34E+05 ! [J kg-1] default = 3.34E+05 + ! The latent heat of fusion as used by SIS. +LATENT_HEAT_VAPOR = 2.5E+06 ! [J kg-1] default = 2.5E+06 + ! The latent heat of vaporization of water at 0C as used by SIS. +CP_ICE = 2100.0 ! [J kg-1 K-1] default = 2100.0 + ! The heat capacity of fresh ice, approximated as a constant. +CP_SEAWATER = 4200.0 ! [J kg-1 K-1] default = 4200.0 + ! The heat capacity of sea water, approximated as a constant. +CP_BRINE = 4200.0 ! [J kg-1 K-1] default = 4200.0 + ! The heat capacity of water in brine pockets within the sea-ice, approximated + ! as a constant. CP_BRINE and CP_SEAWATER should be equal, but for + ! computational convenience CP_BRINE can be set equal to CP_ICE. +DTFREEZE_DS = -0.054 ! [deg C PSU-1] default = -0.054 + ! The derivative of the freezing temperature with salinity. +ENTHALPY_LIQUID_0 = 0.0 ! [J kg-1] default = 0.0 + ! The enthalpy of liquid fresh water at 0 C. The solutions should be physically + ! consistent when this is adjusted, because only the relative value is of + ! physical meaning, but roundoff errors can change the solution. +SUBLIMATION_BUG = False ! [Boolean] default = False + ! If true use an older calculation that omits the latent heat of fusion from the + ! latent heat of sublimation. This variable should be obsoleted as soon as + ! possible. + +! === module SIS_tracer_registry === + +! === module SIS_tracer_flow_control === +USE_ICE_AGE_TRACER = False ! [Boolean] default = False + ! If true, use the concentration based age tracer package. +SIS_FAST_AVAILABLE_DIAGS_FILE = "SIS_fast.available_diags" ! default = "SIS_fast.available_diags" + ! A file into which to write a list of all available sea ice diagnostics that + ! can be included in a diag_table. + +! === module SIS_slow_thermo === +! This module calculates the slow evolution of the ice mass, heat, and salt budgets. +ICE_BULK_SALINITY = 0.0 ! [g/kg] default = 4.0 + ! The fixed bulk salinity of sea ice. +ICE_RELATIVE_SALINITY = 0.1 ! [nondim] default = 0.0 + ! The initial salinity of sea ice as a fraction of the salinity of the seawater + ! from which it formed. +SIS2_FILLING_FRAZIL = True ! [Boolean] default = True + ! If true, apply frazil to fill as many categories as possible to fill in a + ! uniform (minimum) amount of ice in all the thinnest categories. Otherwise the + ! frazil is always assigned to a single category. +FILLING_FRAZIL_TIMESCALE = 0.0 ! [s] default = 0.0 + ! A timescale with which the filling frazil causes the thinest cells to attain + ! similar thicknesses, or a negative number to apply the frazil flux uniformly. +APPLY_ICE_LIMIT = False ! [Boolean] default = False + ! If true, restore the sea ice state toward climatology. +DO_ICE_RESTORE = False ! [Boolean] default = False + ! If true, restore the sea ice state toward climatology. +NUDGE_SEA_ICE = False ! [Boolean] default = False + ! If true, constrain the sea ice concentrations using observations. +TRANSMUTE_SEA_ICE = False ! [Boolean] default = False + ! If true, allow ice to be transmuted directly into seawater with a spatially + ! varying rate as a form of outflow open boundary condition. + +! === module SIS2_ice_thm (updates) === +! This sub-module does updates of the sea-ice due to thermodynamic changes. +SNOW_CONDUCTIVITY = 0.31 ! [W m-1 K-1] default = 0.31 + ! The conductivity of heat in snow. +ICE_CONDUCTIVITY = 2.03 ! [W m-1 K-1] default = 2.03 + ! The conductivity of heat in ice. +MIN_H_FOR_TEMP_CALC = 0.0 ! [m] default = 0.0 + ! The minimum ice thickness at which to do temperature calculations. +DO_POND = False ! [Boolean] default = False + ! If true, calculate melt ponds and use them for shortwave radiation + ! calculation. +TDRAIN = -0.8 ! [degC] default = -0.8 + ! Melt ponds drain to sea level when ice average temp. exceeds TDRAIN (stand-in + ! for mushy layer thermo) +R_MIN_POND = 0.15 ! [nondim] default = 0.15 + ! Minimum retention rate of surface water sources in melt pond (retention scales + ! linearly with ice cover) +R_MAX_POND = 0.9 ! [nondim] default = 0.9 + ! Maximum retention rate of surface water sources in melt pond (retention scales + ! linearly with ice cover) +MIN_POND_FRAC = 0.2 ! [nondim] default = 0.2 + ! Minimum melt pond cover (by ponds at sea level) pond drains to this when ice + ! is porous. +MAX_POND_FRAC = 0.5 ! [nondim] default = 0.5 + ! Maximum melt pond cover - associated with pond volume that suppresses ice top + ! to waterline +ICE_TEMP_RANGE_ESTIMATE = 40.0 ! [degC] default = 40.0 + ! An estimate of the range of snow and ice temperatures that is used to evaluate + ! whether an explicit diffusive form of the heat fluxes or an inversion based on + ! the layer heat budget is more likely to be more accurate. Setting this to 0 + ! causes the explicit diffusive form. to always be used. + +! === module SIS_dyn_trans === +! This module updates the ice momentum and does ice transport. +DT_ICE_DYNAMICS = 600.0 ! [seconds] default = -1.0 + ! The time step used for the slow ice dynamics, including stepping the + ! continuity equation and interactions between the ice mass field and + ! velocities. If 0 or negative the coupling time step will be used. +MERGED_CONTINUITY = False ! [Boolean] default = False + ! If true, update the continuity equations for the ice, snow, and melt pond + ! water together summed across categories, with proportionate fluxes for each + ! part. Otherwise the media are updated separately. +NSTEPS_ADV = 1 ! default = 1 + ! The number of advective iterations for each slow dynamics time step. +ICEBERG_WINDSTRESS_BUG = False ! [Boolean] default = False + ! If true, use older code that applied an old ice-ocean stress to the icebergs + ! in place of the current air-ocean stress. This option is here for backward + ! compatibility, but should be avoided. +WARSAW_SUM_ORDER = True ! [Boolean] default = True + ! If true, use the order of sums in the Warsaw version of SIS2. The default is + ! the opposite of MERGED_CONTINUITY. This option exists for backward + ! compatibilty but may eventually be obsoleted. +TIMEUNIT = 8.64E+04 ! [s] default = 8.64E+04 + ! The time unit for ICE_STATS_INTERVAL. +ICE_STATS_INTERVAL = 10.0 ! [days] default = 1.0 + ! The interval in units of TIMEUNIT between writes of the globally summed ice + ! statistics and conservation checks. +DT_RHEOLOGY = 50.0 ! [seconds] default = -1.0 + ! The sub-cycling time step for iterating the rheology and ice momentum + ! equations. If DT_RHEOLOGY is negative, the time step is set via NSTEPS_DYN. +ICE_TDAMP_ELASTIC = -0.2 ! [s or nondim] default = -0.2 + ! The damping timescale associated with the elastic terms in the sea-ice + ! dynamics equations (if positive) or the fraction of DT_ICE_DYNAMICS (if + ! negative). +WEAK_LOW_SHEAR_ICE = False ! [Boolean] default = False + ! If true, the divergent stresses go toward 0 in the C-grid dynamics when the + ! shear magnitudes are very weak. Otherwise they go to -P_ice. This setting is + ! temporary. +PROJECT_ICE_DRAG_VEL = True ! [Boolean] default = True + ! If true, project forward the ice velocity used in the drag calculation to + ! avoid an instability that can occur when a finite stress is applied to thin + ! ice moving with the velocity of the ocean. +ICE_YIELD_ELLIPTICITY = 2.0 ! [Nondim] default = 2.0 + ! The ellipticity coefficient for the plastic yield curve in the sea-ice + ! rheology. For an infinite ellipticity (i.e., a cavitating fluid rheology), + ! use 0. +ICE_STRENGTH_PSTAR = 2.75E+04 ! [Pa] default = 2.75E+04 + ! A constant in the expression for the ice strength, P* in Hunke & Dukowicz + ! 1997. +ICE_STRENGTH_CSTAR = 20.0 ! [nondim] default = 20.0 + ! A constant in the exponent of the expression for the ice strength, c* in Hunke + ! & Dukowicz 1997. +ICE_CDRAG_WATER = 0.00324 ! [nondim] default = 0.00324 + ! The drag coefficient between the sea ice and water. +MIN_OCN_INTERTIAL_H = 0.0 ! [m] default = 0.0 + ! A minimum ocean thickness used to limit the viscous coupling rate implied for + ! the ocean by the ice-ocean stress. Only used if positive. +ICE_DEL_SH_MIN_SCALE = 2.0 ! [nondim] default = 2.0 + ! A scaling factor for the lower bound on the shear rates used in the + ! denominator of the stress calculation. This probably needs to be greater than + ! 1. +PROJECT_ICE_CONCENTRATION = True ! [Boolean] default = True + ! If true, project the evolution of the ice concentration due to the convergence + ! or divergence of the ice flow. +VEL_UNDERFLOW = 0.0 ! [m s-1] default = 0.0 + ! A negligibly small velocity magnitude below which velocity components are set + ! to 0. A reasonable value might be 1e-30 m/s, which is less than an Angstrom + ! divided by the age of the universe. +STRESS_UNDERFLOW = 0.0 ! [Pa m] default = 0.0 + ! A negligibly small magnitude below which ice stress tensor components are set + ! to 0. A reasonable value might be 1e-15 kg m-1 s-1 times vel_underflow. +CFL_TRUNCATE = 0.5 ! [nondim] default = 0.5 + ! The value of the CFL number that will cause ice velocity components to be + ! truncated; instability can occur past 0.5. +CFL_TRUNC_DYN_ITS = False ! [Boolean] default = False + ! If true, check the CFL number for every iteration of the rheology solver; + ! otherwise only the final velocities that are used for transport are checked. +LEMIEUX_LANDFAST = False ! [Boolean] default = False + ! If true, turn on Lemieux landfast ice parameterization. +ITD_LANDFAST = False ! [Boolean] default = False + ! If true, turn on probabilistic landfast ice parameterization. +RECATEGORIZE_ICE = True ! [Boolean] default = True + ! If true, readjust the distribution into ice thickness categories after + ! advection. +SEA_ICE_ROLL_FACTOR = 1.0 ! [Nondim] default = 1.0 + ! A factor by which the propensity of small amounts of thick sea-ice to become + ! thinner by rolling is increased or 0 to disable rolling. This can be thought + ! of as the minimum number of ice floes in a grid cell divided by the horizontal + ! floe aspect ratio. Sensible values are 0 (no rolling) or larger than 1. +ICE_COVER_DISCARD = -1.0 ! [nondim] default = -1.0 + ! A tiny fractional ice coverage which if positive causes the mass in categories + ! with less than this coverage to be discarded. +SIS_THICKNESS_ADVECTION_SCHEME = "PCM" ! default = "UPWIND_2D" + ! The horizontal transport scheme for thickness: + ! UPWIND_2D - Non-directionally split upwind + ! PCM - Directionally split piecewise constant + ! PLM - Piecewise Linear Method + ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) +INCONSISTENT_COVER_BUG = False ! [Boolean] default = False + ! If true, omit a recalculation of the fractional ice-free areal coverage after + ! the adjustment of the ice categories. +SIS_CONTINUITY_SCHEME = "PCM" ! default = "UPWIND_2D" + ! The horizontal transport scheme used in continuity: + ! UPWIND_2D - Non-directionally split upwind + ! PCM - Directionally split piecewise constant + ! PPM:C2PD - Positive definite PPM with 2nd order edge values + ! PPM:C2MO - Monotonic PPM with 2nd order edge values +CONT_PPM_VOLUME_BASED_CFL = False ! [Boolean] default = False + ! If true, use the ratio of the open face lengths to the tracer cell areas when + ! estimating CFL numbers. +CONTINUITY_H_NEGLECT = 0.0 ! [kg m-2] default = 0.0 + ! The category ice mass per ocean cell area below which the transport within + ! this thickness category of out of a cell is set to zero. A suggested + ! non-default value might be of order 3e-32 kg m-2, which is one molecule of ice + ! per square kilometer. +CONTINUITY_FRAC_NEGLECT = 0.0 ! [nondim] default = 0.0 + ! When the total fluxes are distributed between categories with + ! MERGED_CONTINUITY, any category whose ice is less than this fraction of the + ! total mass contributes no flux. Without MERGED_CONTINUITY, any snow or melt + ! pond transport that is less than this fraction of the ice transport is zeroed + ! out. A suggested non-default value might be of order 1e-20. + +! === module SIS_tracer_advect === +SIS_TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "UPWIND_2D" + ! The horizontal transport scheme for tracers: + ! UPWIND_2D - Non-directionally split upwind + ! PCM - Directionally split piecewise constant + ! PLM - Piecewise Linear Method + ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) +CFL_MASS_NEGLECT_BUG = False ! [Boolean] default = False + ! If true use a globally constant negligible volume in the denominator of the + ! tracer advection CFL calculation, reproducing an older incorrect expression, + ! rather than using a proper scaling of this negligible mass with cell area. +ADCROFT_ADVECTIVE_CFL = False ! [Boolean] default = False + ! If true use the Adcroft reciprocal of the cell mass when calculating the + ! advective CFL numbers used in PPM tracer advection schemes, rather than adding + ! a small mass in the denominator of the advective CFL ratio. + +! === module SIS_sum_output === +WRITE_STOCKS = True ! [Boolean] default = True + ! If true, write the integrated tracer amounts to stdout when the statistics + ! files are written. +STDOUT_HEARTBEAT = True ! [Boolean] default = True + ! If true, periodically write sea ice statistics to stdout to allow the progress + ! to be seen. +MAXTRUNC = 200 ! [truncations save_interval-1] default = 0 + ! The run will be stopped, and the day set to a very large value if the velocity + ! is truncated more than MAXTRUNC times between writing ice statistics. Set + ! MAXTRUNC to 0 to stop if there is any truncation of sea ice velocities. +STATISTICS_FILE = "seaice.stats" ! default = "seaice.stats" + ! The file to use to write the globally integrated statistics. + +! === module SIS_ice_diagnostics === +! This module handles sea-ice state diagnostics. + +! === module SIS_fast_thermo === +! This module applies rapidly varying heat fluxes to the ice and does an implicit surface temperature +! calculation. +REORDER_0C_HEATFLUX = False ! [Boolean] default = False + ! If true, rearrange the calculation of the heat fluxes projected back to 0C to + ! work on each contribution separately, so that they can be indentically + ! replicated if there is a single fast timestep per coupled timestep and + ! REDO_FAST_ICE_UPDATE=True. +MAX_TSKIN_ITT = 10 ! default = 10 + ! The maximum number of iterations of the skin temperature and optical + ! properties during redo_update_ice_model_fast. + +! === module SIS2_ice_thm (updates) === +! This sub-module does updates of the sea-ice due to thermodynamic changes. + +! === module SIS_optics === +! This module calculates the albedo and absorption profiles for shortwave radiation. +DO_DELTA_EDDINGTON_SW = True ! [Boolean] default = True + ! If true, a delta-Eddington radiative transfer calculation for the shortwave + ! radiation within the sea-ice. +ICE_DELTA_EDD_R_ICE = 1.0 ! [nondimensional] default = 0.0 + ! A dreadfully documented tuning parameter for the radiative propeties of sea + ! ice with the delta-Eddington radiative transfer calculation. +ICE_DELTA_EDD_R_SNOW = 1.0 ! [nondimensional] default = 0.0 + ! A dreadfully documented tuning parameter for the radiative propeties of snow + ! on sea ice with the delta-Eddington radiative transfer calculation. +ICE_DELTA_EDD_R_POND = 1.0 ! [nondimensional] default = 0.0 + ! A dreadfully documented tuning parameter for the radiative propeties of + ! meltwater ponds on sea ice with the delta-Eddington radiative transfer + ! calculation. + +! === module MOM_file_parser === +SEND_LOG_TO_STDOUT = False ! [Boolean] default = False + ! If true, all log messages are also sent to stdout. +DOCUMENT_FILE = "SIS_parameter_doc" ! default = "SIS_parameter_doc" + ! The basename for files where run-time parameters, their settings, units and + ! defaults are documented. Blank will disable all parameter documentation. +COMPLETE_DOCUMENTATION = True ! [Boolean] default = True + ! If true, all run-time parameters are documented in SIS_parameter_doc.all . +MINIMAL_DOCUMENTATION = True ! [Boolean] default = True + ! If true, non-default run-time parameters are documented in + ! SIS_parameter_doc.short . diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.debugging b/exps/NWA12.COBALT/SIS_parameter_doc.debugging new file mode 100644 index 000000000..ff3f203b2 --- /dev/null +++ b/exps/NWA12.COBALT/SIS_parameter_doc.debugging @@ -0,0 +1,66 @@ +! This file was written by the model and records the debugging parameters used at run-time. + +! === module MOM_unit_scaling === +! Parameters for doing unit scaling of variables. +Z_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! depths and heights. Valid values range from -300 to 300. +L_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! lateral distances. Valid values range from -300 to 300. +T_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! time. Valid values range from -300 to 300. +R_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! density. Valid values range from -300 to 300. +Q_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! heat content. Valid values range from -300 to 300. +C_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! temperature. Valid values range from -300 to 300. +S_RESCALE_POWER = 0 ! default = 0 + ! An integer power of 2 that is used to rescale the model's internal units of + ! salinity. Valid values range from -300 to 300. +DEBUG = False ! [Boolean] default = False + ! If true, write out verbose debugging data. +DEBUG_SLOW_ICE = False ! [Boolean] default = False + ! If true, write out verbose debugging data on the slow ice PEs. +DEBUG_FAST_ICE = False ! [Boolean] default = False + ! If true, write out verbose debugging data on the fast ice PEs. +DEBUG_CHKSUMS = False ! [Boolean] default = False + ! If true, checksums are performed on arrays in the various vec_chksum routines. +DEBUG_REDUNDANT = False ! [Boolean] default = False + ! If true, debug redundant data points during calls to the various vec_chksum + ! routines. +COLUMN_CHECK = False ! [Boolean] default = False + ! If true, add code to allow debugging of conservation column-by-column. This + ! does not change answers, but can increase model run time. +IMBALANCE_TOLERANCE = 1.0E-09 ! [nondim] default = 1.0E-09 + ! The tolerance for imbalances to be flagged by COLUMN_CHECK. +VERBOSE = False ! [Boolean] default = False + ! If true, write out verbose diagnostics. +DEBUG_EVP_SUBSTEPS = False ! [Boolean] default = False + ! If true, write out verbose debugging data for each of the steps within the EVP + ! solver. +U_TRUNC_FILE = "SIS_U_truncations" ! default = "" + ! The absolute path to the file where the accelerations leading to zonal + ! velocity truncations are written. Leave this empty for efficiency if this + ! diagnostic is not needed. +V_TRUNC_FILE = "SIS_V_truncations" ! default = "" + ! The absolute path to the file where the accelerations leading to meridional + ! velocity truncations are written. Leave this empty for efficiency if this + ! diagnostic is not needed. +MAX_TRUNC_FILE_SIZE_PER_PE = 50 ! default = 50 + ! The maximum number of colums of truncations that any PE will write out during + ! a run. +CHECK_ICE_TRANSPORT_CONSERVATION = False ! [Boolean] default = False + ! If true, use add multiple diagnostics of ice and snow mass conservation in the + ! sea-ice transport code. This is expensive and should be used sparingly. + +! === module MOM_file_parser === +REPORT_UNUSED_PARAMS = True ! [Boolean] default = True + ! If true, report any parameter lines that are not used in the run. +FATAL_UNUSED_PARAMS = False ! [Boolean] default = False + ! If true, kill the run if there are any unused parameters. diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.layout b/exps/NWA12.COBALT/SIS_parameter_doc.layout new file mode 100644 index 000000000..751728ba0 --- /dev/null +++ b/exps/NWA12.COBALT/SIS_parameter_doc.layout @@ -0,0 +1,53 @@ +! This file was written by the model and records the layout parameters used at run-time. +GLOBAL_INDEXING = False ! [Boolean] default = False + ! If true, use a global lateral indexing convention, so that corresponding + ! points on different processors have the same index. This does not work with + ! static memory. + +! === module MOM_domains === +!SYMMETRIC_MEMORY_ = True ! [Boolean] + ! If defined, the velocity point data domain includes every face of the + ! thickness points. In other words, some arrays are larger than others, + ! depending on where they are on the staggered grid. Also, the starting index + ! of the velocity-point arrays is usually 0, not 1. This can only be set at + ! compile time. +NONBLOCKING_UPDATES = False ! [Boolean] default = False + ! If true, non-blocking halo updates may be used. +THIN_HALO_UPDATES = True ! [Boolean] default = True + ! If true, optional arguments may be used to specify the width of the halos that + ! are updated with each call. +!STATIC_MEMORY_ = False ! [Boolean] + ! If STATIC_MEMORY_ is defined, the principle variables will have sizes that are + ! statically determined at compile time. Otherwise the sizes are not determined + ! until run time. The STATIC option is substantially faster, but does not allow + ! the PE count to be changed at run time. This can only be set at compile time. +AUTO_MASKTABLE = False ! [Boolean] default = False + ! Turn on automatic mask table generation to eliminate land blocks. +MASKTABLE = "MOM_mask_table" ! default = "MOM_mask_table" + ! A text file to specify n_mask, layout and mask_list. This feature masks out + ! processors that contain only land points. The first line of mask_table is the + ! number of regions to be masked out. The second line is the layout of the model + ! and must be consistent with the actual model layout. The following (n_mask) + ! lines give the logical positions of the processors that are masked out. The + ! mask_table can be created by tools like check_mask. The following example of + ! mask_table masks out 2 processors, (1,2) and (3,6), out of the 24 in a 4x6 + ! layout: + ! 2 + ! 4,6 + ! 1,2 + ! 3,6 +NIPROC = 20 ! + ! The number of processors in the x-direction. With STATIC_MEMORY_ this is set + ! in SIS2_memory.h at compile time. +NJPROC = 20 ! + ! The number of processors in the y-direction. With STATIC_MEMORY_ this is set + ! in SIS2_memory.h at compile time. +LAYOUT = 20, 20 ! + ! The processor layout that was actually used. +IO_LAYOUT = 1, 1 ! default = 1 + ! The processor layout to be used, or 0,0 to automatically set the io_layout to + ! be the same as the layout. +NIBLOCK = 1 ! default = 1 + ! The number of blocks in the x-direction on each processor (for openmp). +NJBLOCK = 1 ! default = 1 + ! The number of blocks in the y-direction on each processor (for openmp). diff --git a/exps/NWA12.COBALT/SIS_parameter_doc.short b/exps/NWA12.COBALT/SIS_parameter_doc.short new file mode 100644 index 000000000..7aa34b2e1 --- /dev/null +++ b/exps/NWA12.COBALT/SIS_parameter_doc.short @@ -0,0 +1,116 @@ +! This file was written by the model and records the non-default parameters used at run-time. + +! === module ice_model === + +! === module MOM_domains === +REENTRANT_X = False ! [Boolean] default = True + ! If true, the domain is zonally reentrant. +NIGLOBAL = 775 ! + ! The total number of thickness grid points in the x-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. +NJGLOBAL = 845 ! + ! The total number of thickness grid points in the y-direction in the physical + ! domain. With STATIC_MEMORY_ this is set in SIS2_memory.h at compile time. + +! === module SIS_initialize_fixed === +INPUTDIR = "INPUT" ! default = "." + ! The directory in which input files are found. + +! === module MOM_grid_init === +GRID_CONFIG = "mosaic" ! + ! A character string that determines the method for defining the horizontal + ! grid. Current options are: + ! mosaic - read the grid from a mosaic (supergrid) + ! file set by GRID_FILE. + ! cartesian - use a (flat) Cartesian grid. + ! spherical - use a simple spherical grid. + ! mercator - use a Mercator spherical grid. +GRID_FILE = "ocean_hgrid.nc" ! + ! Name of the file from which to read horizontal grid data. +TOPO_FILE = "ocean_topog.nc" ! default = "topog.nc" + ! The file from which the bathymetry is read. +!MAXIMUM_DEPTH = 6857.396484375 ! [m] + ! The (diagnosed) maximum depth of the ocean. + +! === module hor_grid === +! Parameters providing information about the lateral grid. + +! === module SIS2_ice_thm (thermo) === +! This sub-module calculates ice thermodynamic quantities. + +! === module SIS_tracer_registry === + +! === module SIS_tracer_flow_control === + +! === module SIS_slow_thermo === +! This module calculates the slow evolution of the ice mass, heat, and salt budgets. +ICE_BULK_SALINITY = 0.0 ! [g/kg] default = 4.0 + ! The fixed bulk salinity of sea ice. +ICE_RELATIVE_SALINITY = 0.1 ! [nondim] default = 0.0 + ! The initial salinity of sea ice as a fraction of the salinity of the seawater + ! from which it formed. + +! === module SIS2_ice_thm (updates) === +! This sub-module does updates of the sea-ice due to thermodynamic changes. + +! === module SIS_dyn_trans === +! This module updates the ice momentum and does ice transport. +DT_ICE_DYNAMICS = 600.0 ! [seconds] default = -1.0 + ! The time step used for the slow ice dynamics, including stepping the + ! continuity equation and interactions between the ice mass field and + ! velocities. If 0 or negative the coupling time step will be used. +ICE_STATS_INTERVAL = 10.0 ! [days] default = 1.0 + ! The interval in units of TIMEUNIT between writes of the globally summed ice + ! statistics and conservation checks. +DT_RHEOLOGY = 50.0 ! [seconds] default = -1.0 + ! The sub-cycling time step for iterating the rheology and ice momentum + ! equations. If DT_RHEOLOGY is negative, the time step is set via NSTEPS_DYN. +SIS_THICKNESS_ADVECTION_SCHEME = "PCM" ! default = "UPWIND_2D" + ! The horizontal transport scheme for thickness: + ! UPWIND_2D - Non-directionally split upwind + ! PCM - Directionally split piecewise constant + ! PLM - Piecewise Linear Method + ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) +SIS_CONTINUITY_SCHEME = "PCM" ! default = "UPWIND_2D" + ! The horizontal transport scheme used in continuity: + ! UPWIND_2D - Non-directionally split upwind + ! PCM - Directionally split piecewise constant + ! PPM:C2PD - Positive definite PPM with 2nd order edge values + ! PPM:C2MO - Monotonic PPM with 2nd order edge values + +! === module SIS_tracer_advect === +SIS_TRACER_ADVECTION_SCHEME = "PPM:H3" ! default = "UPWIND_2D" + ! The horizontal transport scheme for tracers: + ! UPWIND_2D - Non-directionally split upwind + ! PCM - Directionally split piecewise constant + ! PLM - Piecewise Linear Method + ! PPM:H3 - Piecewise Parabolic Method (Huyhn 3rd order) + +! === module SIS_sum_output === +MAXTRUNC = 200 ! [truncations save_interval-1] default = 0 + ! The run will be stopped, and the day set to a very large value if the velocity + ! is truncated more than MAXTRUNC times between writing ice statistics. Set + ! MAXTRUNC to 0 to stop if there is any truncation of sea ice velocities. + +! === module SIS_ice_diagnostics === +! This module handles sea-ice state diagnostics. + +! === module SIS_fast_thermo === +! This module applies rapidly varying heat fluxes to the ice and does an implicit surface temperature +! calculation. + +! === module SIS2_ice_thm (updates) === +! This sub-module does updates of the sea-ice due to thermodynamic changes. + +! === module SIS_optics === +! This module calculates the albedo and absorption profiles for shortwave radiation. +ICE_DELTA_EDD_R_ICE = 1.0 ! [nondimensional] default = 0.0 + ! A dreadfully documented tuning parameter for the radiative propeties of sea + ! ice with the delta-Eddington radiative transfer calculation. +ICE_DELTA_EDD_R_SNOW = 1.0 ! [nondimensional] default = 0.0 + ! A dreadfully documented tuning parameter for the radiative propeties of snow + ! on sea ice with the delta-Eddington radiative transfer calculation. +ICE_DELTA_EDD_R_POND = 1.0 ! [nondimensional] default = 0.0 + ! A dreadfully documented tuning parameter for the radiative propeties of + ! meltwater ponds on sea ice with the delta-Eddington radiative transfer + ! calculation. From a4c8d671aad6153876ca5768efad9da619e0e051 Mon Sep 17 00:00:00 2001 From: Yi-Cheng Teng - NOAA GFDL <143743249+yichengt900@users.noreply.github.com> Date: Mon, 22 Apr 2024 23:19:40 -0400 Subject: [PATCH 4/6] fix NWA12.COBALT download link --- exps/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/exps/README.md b/exps/README.md index 91f217bd4..250a3148f 100644 --- a/exps/README.md +++ b/exps/README.md @@ -20,4 +20,4 @@ ln -fs /gpfs/f5/cefi/world-shared/datasets ./ cd NWA12.COBALT sbatch run.sub ``` -If users do not have access to Gaea C5, the datasets for the `NWA12` case can be downloaded from [here](ftp.gfdl.noaa.gov:/pub/Yi-cheng.Teng/nwa12_datasets.tar.gz). +If users do not have access to Gaea C5, the datasets for the `NWA12` case be downloaded from `ftp.gfdl.noaa.gov:/pub/Yi-cheng.Teng/nwa12_datasets.tar.gz`. From 6ecd56e0c541b45a88784a5dd2a43407b6654981 Mon Sep 17 00:00:00 2001 From: yuchengt900 Date: Tue, 23 Apr 2024 11:41:50 -0400 Subject: [PATCH 5/6] Update MOM6 tag --- src/MOM6 | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/MOM6 b/src/MOM6 index 19e916f80..fc451f04d 160000 --- a/src/MOM6 +++ b/src/MOM6 @@ -1 +1 @@ -Subproject commit 19e916f809ce18e954dfda65bfc1e2138c728d03 +Subproject commit fc451f04db1e6c6bc76c7570ac056c524caad551 From 11c347265f26cc7d6611a58fc7f0288a1fa3c03f Mon Sep 17 00:00:00 2001 From: yuchengt900 Date: Wed, 24 Apr 2024 12:12:21 -0400 Subject: [PATCH 6/6] Update NWA12-COBALT setup and parameter_docs --- exps/NWA12.COBALT/INPUT/MOM_override | 3 ++- exps/NWA12.COBALT/MOM_parameter_doc.all | 4 ++-- exps/NWA12.COBALT/MOM_parameter_doc.short | 8 +++++--- xmls/NWA12/CEFI_NWA12_cobalt.xml | 3 ++- 4 files changed, 11 insertions(+), 7 deletions(-) diff --git a/exps/NWA12.COBALT/INPUT/MOM_override b/exps/NWA12.COBALT/INPUT/MOM_override index 8698bc7e4..99dc27f38 100644 --- a/exps/NWA12.COBALT/INPUT/MOM_override +++ b/exps/NWA12.COBALT/INPUT/MOM_override @@ -9,5 +9,6 @@ #override DT_THERM = 1200.0 #override DT = 400.0 #override MLD_ITERATION_GUESS = False -#override REMAP_AUXILIARY_VARS = False +#override REMAP_AUXILIARY_VARS = True +#override DIABATIC_FIRST = False #override EQN_OF_STATE = "WRIGHT_FULL" diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.all b/exps/NWA12.COBALT/MOM_parameter_doc.all index 3caeb856c..1f601212f 100644 --- a/exps/NWA12.COBALT/MOM_parameter_doc.all +++ b/exps/NWA12.COBALT/MOM_parameter_doc.all @@ -15,7 +15,7 @@ ENABLE_THERMODYNAMICS = True ! [Boolean] default = True USE_EOS = True ! [Boolean] default = True ! If true, density is calculated from temperature and salinity with an equation ! of state. If USE_EOS is true, ENABLE_THERMODYNAMICS must be true as well. -DIABATIC_FIRST = True ! [Boolean] default = False +DIABATIC_FIRST = False ! [Boolean] default = False ! If true, apply diabatic and thermodynamic processes, including buoyancy ! forcing and mass gain or loss, before stepping the dynamics forward. USE_CONTEMP_ABSSAL = False ! [Boolean] default = False @@ -43,7 +43,7 @@ REMAP_UV_USING_OLD_ALG = False ! [Boolean] default = False ! If true, uses the old remapping-via-a-delta-z method for remapping u and v. If ! false, uses the new method that remaps between grids described by an old and ! new thickness. -REMAP_AUXILIARY_VARS = False ! [Boolean] default = False +REMAP_AUXILIARY_VARS = True ! [Boolean] default = False ! If true, apply ALE remapping to all of the auxiliary 3-dimensional variables ! that are needed to reproduce across restarts, similarly to what is already ! being done with the primary state variables. The default should be changed to diff --git a/exps/NWA12.COBALT/MOM_parameter_doc.short b/exps/NWA12.COBALT/MOM_parameter_doc.short index 413ea2828..c2ebfbcf5 100644 --- a/exps/NWA12.COBALT/MOM_parameter_doc.short +++ b/exps/NWA12.COBALT/MOM_parameter_doc.short @@ -1,12 +1,14 @@ ! This file was written by the model and records the non-default parameters used at run-time. ! === module MOM === -DIABATIC_FIRST = True ! [Boolean] default = False - ! If true, apply diabatic and thermodynamic processes, including buoyancy - ! forcing and mass gain or loss, before stepping the dynamics forward. USE_REGRIDDING = True ! [Boolean] default = False ! If True, use the ALE algorithm (regridding/remapping). If False, use the ! layered isopycnal algorithm. +REMAP_AUXILIARY_VARS = True ! [Boolean] default = False + ! If true, apply ALE remapping to all of the auxiliary 3-dimensional variables + ! that are needed to reproduce across restarts, similarly to what is already + ! being done with the primary state variables. The default should be changed to + ! true. DT = 400.0 ! [s] ! The (baroclinic) dynamics time step. The time-step that is actually used will ! be an integer fraction of the forcing time-step (DT_FORCING in ocean-only mode diff --git a/xmls/NWA12/CEFI_NWA12_cobalt.xml b/xmls/NWA12/CEFI_NWA12_cobalt.xml index 5994569cd..8d86f1625 100644 --- a/xmls/NWA12/CEFI_NWA12_cobalt.xml +++ b/xmls/NWA12/CEFI_NWA12_cobalt.xml @@ -585,7 +585,8 @@ cat > $work/INPUT/MOM_override << MOM_OVERRIDE_EOF #override GENERIC_TRACER_IC_FILE = "NWA12_COBALT_2023_10_spinup_2003.nc" #override EPBL_ANSWER_DATE = 20231231 #override MLD_ITERATION_GUESS = False -#override REMAP_AUXILIARY_VARS = False +#override REMAP_AUXILIARY_VARS = True +#override DIABATIC_FIRST = False #override EQN_OF_STATE = "WRIGHT_FULL" MOM_OVERRIDE_EOF if ( $currentSeg == 1 ) then