Merge pull request #28 from laurenchilutti/AddCI

Add CI to repo

.github/workflows/Intel_Parallelworks_CI.yaml

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+name: Compile SHiELD SOLO and run tests
+
+# This GitHub Action Workflow is running on the cloud devcimultiintel cluster
+# The tests are run inside of a container with the following software/libraries:
+# -intel: 2023.2.0
+# -hdf5: 1.14.0
+# -netcdf-c: 4.9.2
+# -netcdf-fortran: 4.6.0
+# -cmake
+# -libyaml
+
+on:
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  checkout:
+    runs-on: [self-hosted, devcimultiintel]
+    name: Checkout Code
+    steps:
+    # It can take a long time (5-15 minutes) to spinup nodes
+    # so this salloc will prompt 46 nodes to startup and stay active for 20 min
+    # this is enough nodes for the first 17 tests to run in parallel, and we
+    # have 17 runners configured.
+    - run: salloc --partition=p2 -N 46 -J SP_$GITHUB_REF sleep 20m &
+    - run: /contrib/fv3/SHiELD_physics_CI/checkout.sh $GITHUB_REF
+
+  build:
+    runs-on: [self-hosted,devcimultiintel]
+    name: SOLO SHiELD build
+    needs: [checkout]
+    strategy:
+      fail-fast: true
+      max-parallel: 3
+      matrix:
+        runpath: [/contrib/fv3/SHiELD_physics_CI/]
+        runscript: [swcompile.sh, nhcompile.sh, hydrocompile.sh]
+    steps:
+      - env:
+          RUNPATH: ${{ matrix.runpath }}
+          RUNSCRIPT: ${{ matrix.runscript }}
+        run: $RUNPATH/$RUNSCRIPT $GITHUB_REF
+
+  test:
+    runs-on: [self-hosted, devcimultiintel]
+    name: SOLO SHiELD test suite
+    needs: [checkout, build]
+    strategy:
+      fail-fast: false
+      max-parallel: 17
+      matrix:
+        runpath: [/contrib/fv3/SHiELD_physics_CI/]
+        runscript:
+          # These are placed in order of largest to smallest jobs
+          #layout 8,8 needs 8 nodes on dvcimultiintel cluster
+          - C512r20.solo.superC.sh
+          - C768.sw.BTwave.sh
+          #layout 4,8 needs 4 nodes on dvcimultiintel cluster
+          - C256r20.solo.superC.sh
+          - C384.sw.BLvortex.sh
+          #layout 4,4 needs 2 nodes on dvcimultiintel cluster
+          - C128r20.solo.superC.sh
+          - C128r3.solo.TC.d1.sh
+          - C128r3.solo.TC.h6.sh
+          - C128r3.solo.TC.sh
+          - C128r3.solo.TC.tr8.sh
+          - C192.sw.BLvortex.sh
+          - C192.sw.BTwave.sh
+          - C192.sw.modon.sh
+          - C384.sw.BTwave.sh
+          #layout 4,1 and 2,2 need 1 node on dvcimultiintel cluster
+          - C96.solo.BCdry.hyd.sh
+          - C96.solo.BCdry.sh
+          - C96.solo.BCmoist.hyd.d3.sh
+          - C96.solo.BCmoist.hyd.sh
+          - C96.solo.BCmoist.nhK.sh
+          - C96.solo.BCmoist.sh
+          - C96.solo.mtn_rest.hyd.diff2.sh
+          - C96.solo.mtn_rest.hyd.sh
+          - C96.solo.mtn_rest.nonmono.diff2.sh
+          - C96.solo.mtn_rest.sh
+          - C96.sw.BLvortex.sh
+          - C96.sw.BTwave.sh
+          - C96.sw.modon.sh
+          - C96.sw.RHwave.sh
+          - d96_1k.solo.mtn_rest_shear.olddamp.sh
+          - d96_1k.solo.mtn_rest_shear.sh
+          - d96_1k.solo.mtn_schar.mono.sh
+          - d96_1k.solo.mtn_schar.sh
+          - d96_2k.solo.bubble.n0.sh
+          - d96_2k.solo.bubble.nhK.sh
+          - d96_2k.solo.bubble.sh
+          - d96_500m.solo.mtn_schar.sh
+    steps:
+      # This will end the slurm job started in the checkout job
+      - run: scancel -n SP_$GITHUB_REF
+      - env:
+          RUNPATH: ${{ matrix.runpath }}
+          RUNSCRIPT: ${{ matrix.runscript }}
+        run: $RUNPATH/$RUNSCRIPT $GITHUB_REF
+  shutdown:
+    runs-on: [self-hosted, devcimultiintel]
+    name: Shutdown Processes
+    if: always()
+    needs: [checkout, build, test]
+    strategy:
+      fail-fast: false
+      max-parallel: 17
+      matrix:
+        test:
+          - C512r20.solo.superC
+          - C768.sw.BTwave
+          - C256r20.solo.superC
+          - C384.sw.BLvortex
+          - C128r20.solo.superC
+          - C128r3.solo.TC.d1
+          - C128r3.solo.TC.h6
+          - C128r3.solo.TC
+          - C128r3.solo.TC.tr8
+          - C192.sw.BLvortex
+          - C192.sw.BTwave
+          - C192.sw.modon
+          - C384.sw.BTwave
+          - C96.solo.BCdry.hyd
+          - C96.solo.BCdry
+          - C96.solo.BCmoist.hyd.d3
+          - C96.solo.BCmoist.hyd
+          - C96.solo.BCmoist.nhK
+          - C96.solo.BCmoist
+          - C96.solo.mtn_rest.hyd.diff2
+          - C96.solo.mtn_rest.hyd
+          - C96.solo.mtn_rest.nonmono.diff2
+          - C96.solo.mtn_rest
+          - C96.sw.BLvortex
+          - C96.sw.BTwave
+          - C96.sw.modon
+          - C96.sw.RHwave
+          - d96_1k.solo.mtn_rest_shear.olddamp
+          - d96_1k.solo.mtn_rest_shear
+          - d96_1k.solo.mtn_schar.mono
+          - d96_1k.solo.mtn_schar
+          - d96_2k.solo.bubble.n0
+          - d96_2k.solo.bubble.nhK
+          - d96_2k.solo.bubble
+          - d96_500m.solo.mtn_schar
+    steps:
+      - run: scancel -n SP_$GITHUB_REF
+      - env:
+          TEST: ${{ matrix.test }}
+        run: scancel -n SP_$GITHUB_REF_$TEST

.github/workflows/daily_cleanup_parallelworks.yaml

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+name: Old Build Cleanup
+
+# This GitHub Action Workflow is runing on the devcimultiintel cluster
+# This will delete all build directories older than 30 days
+# Build directories are on the cloud at /contrib/fv3/2023.2.0
+
+on:
+  schedule:
+    # run daily at midnight
+    - cron: '0 0 * * *'
+
+jobs:
+  delete:
+    runs-on: [self-hosted, devcimultiintel]
+    name: Delete Builds
+    steps:
+      - run: find /contrib/fv3/2023.2.0/SHiELD_physics/refs/pull -maxdepth 1 -mindepth 1 -mtime +30 -type d -print -delete