create_test_conda_env.yml

name: create_test_conda_env

on: [push]

jobs:
  build-linux:
    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v4
    - name: Set up Python
      uses: actions/setup-python@v5
      with:
        python-version: '>=3.9'

    - name: Add conda to system path
      run: |
        # $CONDA is an environment variable pointing to the root of the miniconda directory
        echo $CONDA/bin >> $GITHUB_PATH

    - name: Create fre-cli environment
      run: |
        # create environment fre-cli will be installed into
        conda env create -f environment.yml --name fre-cli
        # try to make sure the right things are in GITHUB_PATH
        echo $CONDA/envs/fre-cli/bin >> $GITHUB_PATH
        # install fre-cli w pip
        $CONDA/envs/fre-cli/bin/python -m pip install --prefix $CONDA/envs/fre-cli .

    - name: Run pytest in fre-cli environment
      run: |
        # try to make sure the right things are in GITHUB_PATH
        echo $CONDA/envs/fre-cli/bin >> $GITHUB_PATH
        which python
        python --version
        $CONDA/envs/fre-cli/bin/python --version
        # run pytest
        pytest --junit-xml=pytest_results.xml --config-file=fre/pytest.ini --cov-config=fre/coveragerc --cov-report=xml --cov=fre fre/
        # install genbadge to generate coverage badge based on xml
        pip install genbadge
        genbadge coverage -v -i coverage.xml -o docs/cov_badge.svg
        genbadge tests -v -i pytest_results.xml -o docs/pytest_badge.svg
        
    - name: Run pylint in fre-cli environment
      run: |
        # try to make sure the right things are in GITHUB_PATH
        echo $CONDA/envs/fre-cli/bin >> $GITHUB_PATH
        which python
        python --version
        $CONDA/envs/fre-cli/bin/python --version
        # run pylint
        pylint fre/ || echo "pylint returned non-zero exit code. preventing workflow from dying with this echo."
      
    - name: Install Sphinx and Build Documentation
      run: |
        pip install sphinx renku-sphinx-theme sphinx-rtd-theme          
        pip install --upgrade sphinx-rtd-theme
        sphinx-build docs build

    - name: Deploy to GitHub Pages
      uses: peaceiris/actions-gh-pages@v3
      if: ${{ github.ref == 'refs/heads/add_badges' }}
      with:
        publish_branch: gh-pages
        github_token: ${{ secrets.GITHUB_TOKEN }}
        publish_dir: build/
        force_orphan: true