From 7c982fe1e7001fb33eff9e9eacc21a0231edf0d7 Mon Sep 17 00:00:00 2001 From: Ian Date: Mon, 29 Jul 2024 13:37:44 -0400 Subject: [PATCH 1/2] Create fre/cmor/README.md adds back in old notes from original author's usage into `cmor` specific README --- fre/cmor/README.md | 83 ++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 83 insertions(+) create mode 100644 fre/cmor/README.md diff --git a/fre/cmor/README.md b/fre/cmor/README.md new file mode 100644 index 00000000..33f16f5d --- /dev/null +++ b/fre/cmor/README.md @@ -0,0 +1,83 @@ +old usage notes at the top of `CMORmixer.py` + +# Before start this script in common way run these 2 command in terminal where you are going to execute this script: +# module load python/3.9 +# conda activate cmor + +# another possible runs without any preparation in terminal: +# /home/san/anaconda/envs/cmor_dev/bin/python +# /app/spack/v0.15/linux-rhel7-x86_64/gcc-4.8.5/python/3.7.7-d6cyi6ophaei6arnmzya2kn6yumye2yl/bin/python + + +# How to run it (simple examples): +# ~/fms_yaml_tools/CMOR_3/CMORmixer.py +# -d /archive/oar.gfdl.cmip6/CM4/warsaw_201710_om4_v1.0.1/CM4_1pctCO2_C/gfdl.ncrc4-intel16-prod-openmp/pp/atmos/ts/monthly/5yr +# -l /home/san/CMOR_3/GFDL-CM4_1pctCO2_C_CMOR-Amon.lst +# -r /home/san/CMOR/cmor/cmip6-cmor-tables/Tables/CMIP6_Amon.json +# -p /home/san/CMOR/cmor/Test/CMOR_input_CM4_1pctCO2_C.json + +# ~/fms_yaml_tools/CMORmixer.py +# -d /archive/Fabien.Paulot/ESM4/H2/ESM4_amip_D1_soilC_adj/gfdl.ncrc3-intel16-prod-openmp/pp/land/ts/monthly/5yr +# -l /home/san/CMOR_3/GFDL-ESM4_amip_CMOR-landCML.lst +# -r /home/san/CMOR/cmor/cmip6-cmor-tables/Tables/CMIP6_Lmon.json +# -p /home/san/CMOR/cmor/Test/CMOR_input_ESM4_amip.json + +# ~/fms_yaml_tools/CMORmixer.py +# -d /archive/oar.gfdl.cmip6/CM4/warsaw_201710_om4_v1.0.1/CM4_historical/gfdl.ncrc4-intel16-prod-openmp/pp/atmos/ts/monthly/5yr +# -l /home/san/CMOR_3/GFDL-CM4_historical_CMOR-Amon.lst +# -r /home/san/CMOR/cmor/cmip6-cmor-tables/Tables/Atmos_Monthly.json +# -p /home/san/CMOR/cmor/Test/CMOR_input_CM4_historical.json + +# ~/fms_yaml_tools/CMORmixer.py +# -d /archive/oar.gfdl.cmip6/ESM4/DECK/ESM4_historical_D1/gfdl.ncrc4-intel16-prod-openmp/pp/atmos_cmip/ts/daily/5yr +# -l /home/san/CMOR_3/GFDL-ESM4_CMOR-day_historical.lst +# -r /home/san/CMOR/cmor/cmip6-cmor-tables/Tables/CMIP6_day.json +# -p /home/san/CMOR/cmor/Test/CMOR_input_ESM4_historical.json +# -o /net2/san + +# ~/fms_yaml_tools/CMORmixer.py +# -d /archive/oar.gfdl.cmip6/ESM4/DECK/ESM4_historical_D1/gfdl.ncrc4-intel16-prod-openmp/pp/atmos/ts/6hr/5yr +# -l /home/san/CMOR_3/GFDL-ESM4_CMOR-6hr.lst +# -r /home/san/CMOR/cmor/cmip6-cmor-tables/Tables/CMIP6_6hrPlev.json +# -p /home/san/CMOR/cmor/Test/CMOR_input_ESM4_historical.json + +# ~/fms_yaml_tools/CMORmixer.py +# -d /archive/oar.gfdl.cmip6/ESM4/DECK/ESM4_historical_D1/gfdl.ncrc4-intel16-prod-openmp/pp/atmos_cmip/ts/3hr/5yr +# -l /home/san/CMOR_3/GFDL_ESM4_historical_CMOR-3hr.lst +# -r /home/san/CMOR/cmor/cmip6-cmor-tables/Tables/CMIP6_3hr.json +# -p /home/san/CMOR/cmor/Test/CMOR_input_ESM4_historical.json +# -o /net2/san + +# Additional tables containing in /home/san/CMIP6_work/cmor/cmip6-cmor-tables/Tables: +# CMIP6_CV.json +# CMIP6_formula_terms.json +# CMIP6_grids.json +# CMIP6_coordinate.json + +# Detailed description of program is placed at +# https://docs.google.com/document/d/1HPetcUyrVXDwCBIyWheZ_2JzOz7ZHi1y3vmIlcErYeA/edit?pli=1 + +# Keep in mind rule for input ../cmor/cmip6-cmor-tables/Tables/*.json: +# output variables can not contain "_" in out_name, though name (and standard_name) itself can have it; example: +# "alb_sfc": { +# "frequency": "mon", +# "modeling_realm": "atmos", +# "standard_name": "alb_sfc", +# "units": "percent", +# "cell_methods": "area: time: mean", +# "long_name": "surface albedo", +# "comment": "", +# "dimensions": "longitude latitude time", +# "out_name": "albsfc", +# "type": "real", +# "positive": "", +# "valid_min": "", +# "valid_max": "", +# "ok_min_mean_abs": "", +# "ok_max_mean_abs": "" +# } + +# Problems with standard CMOR library: +# - monthly variable "enth_conv_col" produces error - CMOR expects 4 dimensions but it has only 3; +# - variable /archive/oar.gfdl.cmip6/CM4/warsaw_201710_om4_v1.0.1/CM4_historical/gfdl.ncrc4-intel16-prod-openmp/pp/atmos_cmip/ts/3hr/5yr/atmos_cmip.1965010100-1969123123.clt.nc +# is not readable. From 8d5ea27b21fd16807a4464ad2e8798d52bdb96a8 Mon Sep 17 00:00:00 2001 From: Ian Date: Mon, 29 Jul 2024 13:51:51 -0400 Subject: [PATCH 2/2] Rename README.md to README --- fre/cmor/{README.md => README} | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename fre/cmor/{README.md => README} (100%) diff --git a/fre/cmor/README.md b/fre/cmor/README similarity index 100% rename from fre/cmor/README.md rename to fre/cmor/README