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Removing extra brackets I added for some reason
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andrewramsay authored Jun 7, 2022
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12 changes: 6 additions & 6 deletions CHANGELOG.md
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Expand Up @@ -6,7 +6,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/).

Starting from v1.1, each release listed here will also have a corresponding tagged [Docker image version](https://hub.docker.com/r/andrewramsay/nplinker/tags?page=1&ordering=last_updated). If you want to use the latest version of NPLinker, use `docker pull andrewramsay/nplinker:latest`. If you want a specific version, you can instead use `docker pull andrewramsay/nplinker:v1.1` etc.

## [[v1.2.0]](https://github.com/sdrogers/nplinker/compare/v1.1.3...v1.2.0)
## [v1.2.0](https://github.com/sdrogers/nplinker/compare/v1.1.3...v1.2.0)

To use this release, run `docker pull andrewramsay:nplinker:v1.2.0`

Expand All @@ -29,7 +29,7 @@ To use this release, run `docker pull andrewramsay:nplinker:v1.2.0`
- The downloader module has been updated to ensure it will follow HTTP redirects, and to try to workaround intermittent failures to retrieve pages from https://www.ncbi.nlm.nih.gov. This may be down to some throttling behaviour on the server, as a follow-up attempt usually succeeds. The downloader module will now make an automatic 2nd attempt to retrieve a page if the first attempt fails, with a 5 second delay between them
- Some Python dependency versions updated

## [[v1.1.3]](https://github.com/sdrogers/nplinker/compare/v1.1.2...v1.1.3) - 2021-11-26
## [v1.1.3](https://github.com/sdrogers/nplinker/compare/v1.1.2...v1.1.3) - 2021-11-26

To use this release, run `docker pull andrewramsay:nplinker:v1.1.3`

Expand All @@ -40,15 +40,15 @@ To use this release, run `docker pull andrewramsay:nplinker:v1.1.3`
- Download process better handles genome records with no usable genome ID
- Added more logging for information/debugging

## [[v1.1.2]](https://github.com/sdrogers/nplinker/compare/v1.1.1...v1.1.2) - 2021-09-23
## [v1.1.2](https://github.com/sdrogers/nplinker/compare/v1.1.1...v1.1.2) - 2021-09-23

To use this release, run `docker pull andrewramsay:nplinker:v1.1.2`

### Changed

- BiG-SCAPE parameter handling behaviour has been updated. See the [default configuration file](https://github.com/sdrogers/nplinker/blob/666669e32724139bcc27d6869a986f891c1dc0cf/prototype/nplinker/data/nplinker.toml#L200) for details. The default settings are the same as the last release

## [[v1.1.1]](https://github.com/sdrogers/nplinker/compare/v1.1...v1.1.1) - 2021-09-13
## [v1.1.1](https://github.com/sdrogers/nplinker/compare/v1.1...v1.1.1) - 2021-09-13

To use this release, run `docker pull andrewramsay:nplinker:v1.1.1`

Expand All @@ -59,7 +59,7 @@ To use this release, run `docker pull andrewramsay:nplinker:v1.1.1`
- bugfix for parameter handling in NPLinker.get_links method


## [[v1.1]](https://github.com/sdrogers/nplinker/compare/v1.0...v1.1) - 2021-09-04
## [v1.1](https://github.com/sdrogers/nplinker/compare/v1.0...v1.1) - 2021-09-04

To use this release, run `docker pull andrewramsay:nplinker:v1.1`

Expand All @@ -82,7 +82,7 @@ To use this release, run `docker pull andrewramsay:nplinker:v1.1`
- old `strain_id_mapping.csv` file is now removed to avoid name clashes with uesr-provided strain mappings (this was an early development feature anyway)
- various unused/older files cluttering the repository

## [[v1.0]](https://github.com/sdrogers/nplinker/compare/v.0.1...v1.0) - 2021-04-12
## [v1.0](https://github.com/sdrogers/nplinker/compare/v.0.1...v1.0) - 2021-04-12

### Added

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