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Worked it out, adding the following to the src level CMakeLists.txt nRF5_addAppFlashTarget(${target} "${CMAKE_CURRENT_BINARY_DIR}/${target}.hex")
Easy when you know how :)
The readme is out of date - states we can use flash_ and a number of other targets that do not exist.
I'm going off what's generated in the makefile:
But I don't see anyway to flash just the app, or app plus SD.
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