A collection of Python scripts, modules and notebooks for biologists and general lab workers.
Modules and notebooks available:
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Serial dilution calculator. Module - returns a dilution series in a standard assay plate formats. Requires the data file 'plate_data.toml'.
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EC anything calculator. Module - determines a range of EC values from a given EC50 and the Hill slope
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Rad Calcs! - A Jupyter notebook to assist with calculating the decay, specific activity and concentration of radioactive solutions. - Takes halflife and isoptope data from https://radioactivedecay.github.io/
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Cell Doubling Time. Module - for determing doubling time, projecting cell growth or predicting cell numbers of populations of cells undertaking exponential growth.
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Gaf_ODs_ImageJ - Script for caluclating optical density (OD), or absorbance, from Gafchromic film scanned with flat bed scanner and processed with imageJ.Takes the csv output from ImageJ ROI's and returns a second csv file containing %transmitance and OD values.
These are all personal projects I have started in order to learn more about coding and computing in general. I'll continue to add tools I make, and that I find useful, as I complete them.
All feedback and suggestions are welcome.
Thanks!