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update environment settings in server startup scripts
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 * these use older server conda environments
 * also remove overlay directory in PYTHONPATH for fmx
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JunAishima committed Jan 19, 2023
1 parent db12867 commit 849fbb6
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Showing 5 changed files with 6 additions and 6 deletions.
2 changes: 1 addition & 1 deletion bin/lsdcRemote_amx.cmd
Original file line number Diff line number Diff line change
Expand Up @@ -10,5 +10,5 @@ export LD_LIBRARY_PATH=$matlab_distrib/bin/glnx86:$matlab_distrib/toolbox
export PINALIGNDIR=${PROJDIR}pinAlign/pin_align-master/
export MXPROCESSINGSCRIPTSDIR=${PROJDIR}mx-processing/
# below not ideal as environment name also needed by daq_mainAux
conda activate lsdc-server-2022-3.2
conda activate lsdc-server-2023-1.0
$LSDCHOME/daq_mainAux.py
2 changes: 1 addition & 1 deletion bin/lsdcRemote_fmx.cmd
Original file line number Diff line number Diff line change
Expand Up @@ -10,5 +10,5 @@ export LD_LIBRARY_PATH=$matlab_distrib/bin/glnx86:$matlab_distrib/toolbox
export PINALIGNDIR=${PROJDIR}pinAlign/pin_align-master/
export MXPROCESSINGSCRIPTSDIR=${PROJDIR}mx-processing/
# below not ideal as environment name also needed by daq_mainAux
conda activate lsdc-server-2022-3.2
conda activate lsdc-server-2023-1.0
$LSDCHOME/daq_mainAux.py
2 changes: 1 addition & 1 deletion bin/lsdcServer_amx.cmd
Original file line number Diff line number Diff line change
Expand Up @@ -10,5 +10,5 @@ export LD_LIBRARY_PATH=$matlab_distrib/bin/glnx86:$matlab_distrib/toolbox
export PINALIGNDIR=${PROJDIR}pinAlign/pin_align-master/
export MXPROCESSINGSCRIPTSDIR=${PROJDIR}lsdc-processing/
# below not idea as environment name also needed by daq_main2
conda activate lsdc-server-2022-4.0
conda activate lsdc-server-2023-1.0
$LSDCHOME/lsdcServer
4 changes: 2 additions & 2 deletions bin/lsdcServer_fmx.cmd
Original file line number Diff line number Diff line change
Expand Up @@ -2,13 +2,13 @@
export PROJDIR=/nsls2/software/mx/daq/
export CONFIGDIR=${PROJDIR}bnlpx_config/
export LSDCHOME=${PROJDIR}lsdc_fmx
export PYTHONPATH="/nsls2/data/fmx/shared/config/lsdc_overlay/lsdc-server-2022-3.1/lib/python3.8/site-packages:.:${CONFIGDIR}:/usr/lib64/edna-mx/mxv1/src:/usr/lib64/edna-mx/kernel/src:${LSDCHOME}:${PROJDIR}/RobotControlLib"
export PYTHONPATH=".:${CONFIGDIR}:/usr/lib64/edna-mx/mxv1/src:/usr/lib64/edna-mx/kernel/src:${LSDCHOME}:${PROJDIR}/RobotControlLib"
export PATH=/usr/local/bin:/usr/bin:/bin:${PROJDIR}/software/bin:/opt/ccp4/bin
source ${CONFIGDIR}daq_env.txt
export matlab_distrib=${PROJDIR}/software/c3d/matlab_distrib
export LD_LIBRARY_PATH=$matlab_distrib/bin/glnx86:$matlab_distrib/toolbox
export PINALIGNDIR=${PROJDIR}pinAlign/pin_align-master/
export MXPROCESSINGSCRIPTSDIR=${PROJDIR}lsdc-processing/
# below not idea as environment name also needed by daq_main2
conda activate lsdc-server-2022-3.2
conda activate lsdc-server-2023-1.0
$LSDCHOME/lsdcServer
2 changes: 1 addition & 1 deletion bin/lsdcServer_nyx.cmd
Original file line number Diff line number Diff line change
Expand Up @@ -10,5 +10,5 @@ export matlab_distrib=${PROJDIR}/software/c3d/matlab_distrib
export LD_LIBRARY_PATH=$matlab_distrib/bin/glnx86:$matlab_distrib/toolbox
export PINALIGNDIR=${PROJDIR}pinAlign/pin_align-master/
export MXPROCESSINGSCRIPTSDIR=${PROJDIR}lsdc-processing/
conda activate lsdc-server-2022-3.2
conda activate lsdc-server-2023-1.0
$LSDCHOME/lsdcServer

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