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environment.yml
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name: SEACON
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- bcftools=1.17=h3cc50cf_1
- bedtools=2.31.1=hf5e1c6e_1
- binutils_impl_linux-64=2.40=ha1999f0_1
- biopython=1.83=py310h2372a71_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=hd590300_5
- c-ares=1.28.1=hd590300_0
- ca-certificates=2024.6.2=hbcca054_0
- cairo=1.16.0=ha61ee94_1014
- cffi=1.16.0=py310h2fee648_0
- curl=7.87.0=h6312ad2_0
- expat=2.6.2=h59595ed_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=h77eed37_2
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=13.2.0=h9eb54c0_7
- gettext=0.22.5=h59595ed_2
- gettext-tools=0.22.5=h59595ed_2
- gfortran_impl_linux-64=13.2.0=h738fc78_7
- graphite2=1.3.13=h59595ed_1003
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=13.2.0=h2a599c4_7
- harfbuzz=6.0.0=h8e241bc_0
- htslib=1.17=h6bc39ce_1
- icu=70.1=h27087fc_0
- importlib-metadata=7.1.0=pyha770c72_0
- jinja2=3.1.4=pyhd8ed1ab_0
- joblib=1.4.2=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- kernel-headers_linux-64=2.6.32=he073ed8_17
- keyutils=1.6.1=h166bdaf_0
- krb5=1.20.1=hf9c8cef_0
- ld_impl_linux-64=2.40=hf3520f5_1
- lerc=4.0.0=h27087fc_0
- libasprintf=0.22.5=h661eb56_2
- libasprintf-devel=0.22.5=h661eb56_2
- libblas=3.9.0=22_linux64_openblas
- libcblas=3.9.0=22_linux64_openblas
- libcurl=7.87.0=h6312ad2_0
- libdeflate=1.17=h0b41bf4_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=hd590300_2
- libexpat=2.6.2=h59595ed_0
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=13.2.0=hceb6213_107
- libgcc-ng=13.2.0=h77fa898_7
- libgettextpo=0.22.5=h59595ed_2
- libgettextpo-devel=0.22.5=h59595ed_2
- libgfortran-ng=13.2.0=h69a702a_7
- libgfortran5=13.2.0=hca663fb_7
- libglib=2.78.1=hebfc3b9_0
- libgomp=13.2.0=h77fa898_7
- libiconv=1.17=hd590300_2
- liblapack=3.9.0=22_linux64_openblas
- libnghttp2=1.51.0=hdcd2b5c_0
- libnsl=2.0.1=hd590300_0
- libopenblas=0.3.27=pthreads_h413a1c8_0
- libpng=1.6.43=h2797004_0
- libsanitizer=13.2.0=h6ddb7a1_7
- libsqlite=3.45.3=h2797004_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-devel_linux-64=13.2.0=hceb6213_107
- libstdcxx-ng=13.2.0=hc0a3c3a_7
- libtiff=4.5.0=h6adf6a1_2
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.4.0=hd590300_0
- libxcb=1.13=h7f98852_1004
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.10.3=hca2bb57_4
- libzlib=1.2.13=h4ab18f5_6
- make=4.3=hd18ef5c_1
- markupsafe=2.1.5=py310h2372a71_0
- mysql-connector-c=6.1.11=h6eb9d5d_1007
- ncurses=6.5=h59595ed_0
- numpy=1.26.4=py310hb13e2d6_0
- openssl=1.1.1w=hd590300_0
- packaging=24.0=pyhd8ed1ab_0
- pandas=2.2.2=py310hf9f9076_1
- pango=1.50.14=hd33c08f_0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=7_hd590300_perl5
- pip=24.0=pyhd8ed1ab_0
- pixman=0.43.2=h59595ed_0
- pthread-stubs=0.4=h36c2ea0_1001
- pycparser=2.22=pyhd8ed1ab_0
- pyfaidx=0.8.1.1=pyhdfd78af_0
- pysam=0.21.0=py310hff46b53_0
- python=3.10.8=h257c98d_0_cpython
- python-dateutil=2.9.0=pyhd8ed1ab_0
- python-tzdata=2024.1=pyhd8ed1ab_0
- python_abi=3.10=4_cp310
- pytz=2024.1=pyhd8ed1ab_0
- pyvcf=0.6.8=py310hff52083_1003
- pyvcf3=1.0.3=pyhdfd78af_0
- r-base=4.2.2=ha7d60f8_3
- r-biocmanager=1.30.23=r42hc72bb7e_0
- readline=8.2=h8228510_1
- rpy2=3.5.11=py310r42h1f7b6fc_3
- scikit-learn=1.5.0=py310h981052a_1
- scipy=1.13.1=py310h93e2701_0
- sed=4.8=he412f7d_0
- setuptools=70.0.0=pyhd8ed1ab_0
- simplegeneric=0.8.1=py_1
- six=1.16.0=pyh6c4a22f_0
- sysroot_linux-64=2.12=he073ed8_17
- threadpoolctl=3.5.0=pyhc1e730c_0
- tk=8.6.13=noxft_h4845f30_101
- tktable=2.10=h0c5db8f_5
- tzdata=2024a=h0c530f3_0
- tzlocal=5.2=py310hff52083_0
- ucsc-bigwigaverageoverbed=377=ha8a8165_3
- wheel=0.43.0=pyhd8ed1ab_1
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.3.0=hd590300_0
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zipp=3.17.0=pyhd8ed1ab_0
- zlib=1.2.13=h4ab18f5_6
- zstd=1.5.6=ha6fb4c9_0