Merge branch 'main' of https://github.com/Nance-Lab/diff_viz into main

Author: nlsschim

.github/workflows/python-package.yml

@@ -16,7 +16,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.7"]
+        python-version: ["3.9"]
 
     steps:
     - uses: actions/checkout@v3
@@ -27,12 +27,27 @@ jobs:
     - name: Install dependencies
       run: |
         python -m pip install --upgrade pip
-        python -m pip install flake8 pytest
+        python -m pip install flake8 pytest coverage
         pip install -r requirements.txt
+
+    - name: Clone diff_predictor and diff_classifier
+      run: |
+        git clone https://github.com/Nance-Lab/diff_predictor.git
+        git clone https://github.com/Nance-Lab/diff_classifier.git
+    - name: run setup.py for diff_predictor
+      run: |
+        cd diff_predictor
+        python setup.py install
+        
+    - name: run setup.py for diff_classifier
+      run: |
+        cd diff_classifier
+        python setup.py install
+        
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
-        flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
+        #flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
         # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
 

requirements.txt

@@ -1,16 +1,13 @@
-pandas==1.3.2
+pandas
 numpy
 matplotlib
 seaborn
-pytest>=7.3.1
+pytest
 jupyter
 ipykernel
 streamlit_tags
 streamlit==1.9.2
 numpydoc==1.5.0
-coverage
-hypothesis==6.75.9
+hypothesis
 pydata-sphinx-theme
-diff_predictor
-diff_classifier
-scipy
+scipy