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This pull request includes several changes to the
lib/realms/smartseq3
andygg
modules to improve code organization and error handling. The key changes involve moving methods to more appropriate locations, enhancing logging for error handling, and refactoring code for better readability and maintainability.Refactoring and Code Organization:
lib/realms/smartseq3/ss3_project.py
: Moved the_extract_project_info
method to a different part of the file for better organization. [1] [2]lib/realms/smartseq3/ss3_sample.py
: Moved theprocess
method to a different part of the file for better organization. [1] [2]Error Handling Improvements:
ygg_trunk.py
: Enhanced error handling in theprocess_couchdb_changes
function by adding logging for exceptions raised during task execution. [1] [2]ygg-mule.py
: Added a newlaunch_realm
asynchronous function to handle exceptions during the realm launch process and updated theprocess_document
function to use this new function. [1] [2]Minor Changes:
lib/realms/smartseq3/ss3_project.py
: Removed commented-out code and updated comments for clarity.