diff --git a/README.md b/README.md index 9093cb1..6a0c3ec 100644 --- a/README.md +++ b/README.md @@ -15,21 +15,6 @@ For more information on how this can be used, please see this [poster](docs/AGBT ## Installation -### Requirements - -- Python3 (3.7) - -Python modules: - -- biopython v. 1.70 -- python-levenshtein v. 0.12.0 -- numpy v. 1.19.2 -- pyyaml v. 6.0 - -Software: - -- minimap2 v. 2.20 - ### From PyPi ``` diff --git a/environment.yml b/environment.yml index f695b3d..f6b8284 100644 --- a/environment.yml +++ b/environment.yml @@ -5,6 +5,6 @@ channels: dependencies: - conda-forge::biopython=1.79 - conda-forge::python-levenshtein=0.23.0 - - conda-forge::numpy=1.22.0 + - conda-forge::numpy>=1.22.0 - bioconda::minimap2=2.20 - conda-forge::pyyaml=6.0 diff --git a/setup.py b/setup.py index 6408fd5..d5a7814 100644 --- a/setup.py +++ b/setup.py @@ -17,26 +17,26 @@ this_directory = Path(__file__).parent long_description = (this_directory / "README.md").read_text() -version = "0.6.0" +version='0.6.1-dev' setup( name="bio-anglerfish", version=version, description="Anglerfish, a tool to demultiplex Illumina libraries from ONT data", long_description=long_description, - long_description_content_type="text/markdown", - author="Remi-Andre Olsen", - author_email="remi-andre.olsen@scilifelab.se", - url="https://github.com/remiolsen/anglerfish", - license="MIT", - python_requires=">=3.7", - packages=find_packages(), - package_data={"": ["config/adaptors.yaml"]}, + long_description_content_type='text/markdown', + author='Remi-Andre Olsen', + author_email='remi-andre.olsen@scilifelab.se', + url='https://github.com/remiolsen/anglerfish', + license='MIT', + python_requires=">=3.10", + packages = find_packages(), + package_data = {"":["config/adaptors.yaml"]}, install_requires=[ - "python-levenshtein==0.23.0", - "biopython==1.79", - "numpy==1.22.0", - "pyyaml==6.0", + 'python-levenshtein==0.23.0', + 'biopython==1.79', + 'numpy>=1.22.0', + 'pyyaml==6.0' ], entry_points={ "console_scripts": [