From f69fa0a18d1b286f2a9c5e3a370a29f6120db313 Mon Sep 17 00:00:00 2001 From: Remi-Andre Olsen Date: Thu, 11 Jan 2024 11:20:11 +0100 Subject: [PATCH 1/3] Change requirements to py3.10 --- environment.yml | 2 +- setup.py | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/environment.yml b/environment.yml index f695b3d..f6b8284 100644 --- a/environment.yml +++ b/environment.yml @@ -5,6 +5,6 @@ channels: dependencies: - conda-forge::biopython=1.79 - conda-forge::python-levenshtein=0.23.0 - - conda-forge::numpy=1.22.0 + - conda-forge::numpy>=1.22.0 - bioconda::minimap2=2.20 - conda-forge::pyyaml=6.0 diff --git a/setup.py b/setup.py index 72b5591..a8a8451 100644 --- a/setup.py +++ b/setup.py @@ -27,13 +27,13 @@ author_email='remi-andre.olsen@scilifelab.se', url='https://github.com/remiolsen/anglerfish', license='MIT', - python_requires=">=3.7", + python_requires=">=3.10", packages = find_packages(), package_data = {"":["config/adaptors.yaml"]}, install_requires=[ 'python-levenshtein==0.23.0', 'biopython==1.79', - 'numpy==1.22.0', + 'numpy>=1.22.0', 'pyyaml==6.0' ], entry_points={ From 5176cd8ca0cf1c1421792c690d5565cce32a46f9 Mon Sep 17 00:00:00 2001 From: Remi-Andre Olsen Date: Thu, 11 Jan 2024 11:28:16 +0100 Subject: [PATCH 2/3] Removed redundancy regarding requirements --- README.md | 15 --------------- 1 file changed, 15 deletions(-) diff --git a/README.md b/README.md index 123c4b2..bc08a01 100644 --- a/README.md +++ b/README.md @@ -15,21 +15,6 @@ For more information on how this can be used, please see this [poster](docs/AGBT ## Installation -### Requirements - -* Python3 (3.7) - -Python modules: - -* biopython v. 1.70 -* python-levenshtein v. 0.12.0 -* numpy v. 1.19.2 -* pyyaml v. 6.0 - -Software: - -* minimap2 v. 2.20 - ### From PyPi ``` From dd34f8d20259693619ccbca87a6561867a1bdc8e Mon Sep 17 00:00:00 2001 From: Remi-Andre Olsen Date: Thu, 11 Jan 2024 11:38:58 +0100 Subject: [PATCH 3/3] Bump to 0.6.1-dev --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index a8a8451..19b6e08 100644 --- a/setup.py +++ b/setup.py @@ -15,7 +15,7 @@ this_directory = Path(__file__).parent long_description = (this_directory / "README.md").read_text() -version='0.6.0' +version='0.6.1-dev' setup( name='bio-anglerfish',