From 73533b570df060ed4e74a47078692caf0fe96871 Mon Sep 17 00:00:00 2001
From: Johannes Alneberg <alneberg@kth.se>
Date: Tue, 23 Jan 2024 09:08:04 +0100
Subject: [PATCH] Ruff formatting for entropy file

---
 anglerfish/explore/entropy.py | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/anglerfish/explore/entropy.py b/anglerfish/explore/entropy.py
index 403d9cd..9ac733a 100644
--- a/anglerfish/explore/entropy.py
+++ b/anglerfish/explore/entropy.py
@@ -3,6 +3,7 @@
 
 import numpy as np
 
+
 # Rolling window implementation
 def _window(seq, n=3):
     win = deque(maxlen=n)
@@ -14,12 +15,12 @@ def _window(seq, n=3):
 
 def _entropy(pk, qk):
     """
-    Kullback-Leibler divergence (relative entropy) 
+    Kullback-Leibler divergence (relative entropy)
     Reference https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.entropy.html
     """
     if np.sum(pk) - 1 > 1e-5:
         pk = pk / np.sum(pk)
-    return np.sum(pk * np.log(pk/qk))
+    return np.sum(pk * np.log(pk / qk))
 
 
 # Each sequence gives matrix of position and k-mer occurence.