Change back to demux default for B in minimap2

NationalGenomicsInfrastructure · Jan 18, 2024 · cba68fc · cba68fc
1 parent 76e499a
commit cba68fc
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/anglerfish/demux/demux.py b/anglerfish/demux/demux.py
@@ -24,7 +24,7 @@ def parse_cs(cs_string, index, max_distance):
     return nts, lev.distance(index.lower(), nts)
 
 
-def run_minimap2(fastq_in, indexfile, output_paf, threads, minimap_b=4):
+def run_minimap2(fastq_in, indexfile, output_paf, threads, minimap_b=1):
     """
     Runs Minimap2
     """