From cba68fc1724da29da9567216e93a9fe90b3d990d Mon Sep 17 00:00:00 2001 From: Johannes Alneberg Date: Thu, 18 Jan 2024 21:40:47 +0000 Subject: [PATCH] Change back to demux default for B in minimap2 --- anglerfish/demux/demux.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/anglerfish/demux/demux.py b/anglerfish/demux/demux.py index f174443..ad01123 100644 --- a/anglerfish/demux/demux.py +++ b/anglerfish/demux/demux.py @@ -24,7 +24,7 @@ def parse_cs(cs_string, index, max_distance): return nts, lev.distance(index.lower(), nts) -def run_minimap2(fastq_in, indexfile, output_paf, threads, minimap_b=4): +def run_minimap2(fastq_in, indexfile, output_paf, threads, minimap_b=1): """ Runs Minimap2 """