diff --git a/host_vars/127.0.0.1/main.yml b/host_vars/127.0.0.1/main.yml index 25f3fbe1..d572c451 100644 --- a/host_vars/127.0.0.1/main.yml +++ b/host_vars/127.0.0.1/main.yml @@ -46,7 +46,8 @@ ngi_rnaseq_dest: "{{ root_path }}/sw/ngi-rnaseq" gatk_key: pontus.larsson_medsci.uu.se.key -recipient_mail: ngi_pipeline_operators@scilifelab.se +recipient_mail_sthlm: ngi_pipeline_operators@scilifelab.se +recipient_mail_upps: medsci-molmed-bioinfo@googlegroups.com validation_data_root: "/lupus/ngi/validation_data/" validation_data: diff --git a/roles/ngi_pipeline/tasks/main.yml b/roles/ngi_pipeline/tasks/main.yml index 186702a2..caf244ec 100644 --- a/roles/ngi_pipeline/tasks/main.yml +++ b/roles/ngi_pipeline/tasks/main.yml @@ -58,6 +58,7 @@ ngi_pipeline_db: "{{ ngi_pipeline_db_upps }}" ngi_pipeline_slurm_project: "{{ ngi_pipeline_upps_delivery }}" ngi_pipeline_log: "{{ ngi_pipeline_log_upps }}" + recipient_mail: "{{ recipient_mail_upps }}" - name: Deploy irma ngi_pipeline config for uppsala template: src="irma_ngi_config.yaml.j2" dest="{{ ngi_pipeline_conf }}/{{ upps_config }}" @@ -67,6 +68,7 @@ ngi_pipeline_db: "{{ ngi_pipeline_db_sthlm }}" ngi_pipeline_slurm_project: "{{ ngi_pipeline_sthlm_delivery }}" ngi_pipeline_log: "{{ ngi_pipeline_log_sthlm }}" + recipient_mail: "{{ recipient_mail_sthlm }}" - name: Deploy irma ngi_pipeline config for stockholm template: src="irma_ngi_config.yaml.j2" dest="{{ ngi_pipeline_conf }}/{{ sthlm_config }}" diff --git a/roles/nougat/templates/NouGAT_config.conf.j2 b/roles/nougat/templates/NouGAT_config.conf.j2 index 65bb4fff..9e2e4739 100644 --- a/roles/nougat/templates/NouGAT_config.conf.j2 +++ b/roles/nougat/templates/NouGAT_config.conf.j2 @@ -3,7 +3,7 @@ qc_analysis: time: 1-00:00:00 project: {{ ngi_pipeline_sthlm_delivery }} threads: 16 - email: {{ recipient_mail }} + email: {{ recipient_mail_sthlm }} env: {{ NGI_venv_name }} qos: normal qc_report: @@ -14,7 +14,7 @@ assembly: time: 1-00:00:00 project: {{ ngi_pipeline_sthlm_delivery }} threads: 16 - email: {{ recipient_mail }} + email: {{ recipient_mail_sthlm }} env: {{ NGI_venv_name }} qos: normal validation: @@ -22,6 +22,6 @@ validation: time: 1-00:00:00 project: {{ ngi_pipeline_sthlm_delivery }} threads: 16 - email: {{ recipient_mail }} + email: {{ recipient_mail_sthlm }} env: {{ NGI_venv_name }} qos: normal diff --git a/roles/taca/tasks/main.yml b/roles/taca/tasks/main.yml index d9c64f28..b1858cfe 100644 --- a/roles/taca/tasks/main.yml +++ b/roles/taca/tasks/main.yml @@ -23,6 +23,7 @@ ngi_pipeline_site_path: "{{ ngi_pipeline_upps_path }}" ngi_site_softlinks: "{{ ngi_upps_softlinks }}" ngi_pipeline_site_delivery: "{{ ngi_pipeline_upps_delivery }}" + recipient_mail: "{{ recipient_mail_upps }}" - name: Deploy standard uppsala configs template: src="site_taca_delivery.yml.j2" dest="{{ ngi_pipeline_conf }}/TACA/{{ site }}_{{ item.name }}_delivery.yml" @@ -36,6 +37,7 @@ ngi_pipeline_site_path: "{{ ngi_pipeline_sthlm_path }}" ngi_site_softlinks: "{{ ngi_sthlm_softlinks }}" ngi_pipeline_site_delivery: "{{ ngi_pipeline_sthlm_delivery }}" + recipient_mail: "{{ recipient_mail_sthlm }}" - name: Deploy sthlm_taca_local.yml config template: src="site_taca_local.yml.j2" dest="{{ ngi_pipeline_conf }}/TACA/{{ site }}_taca_local.yml"