From 0408c540973a63ebb90fd016cb3574dc909951c9 Mon Sep 17 00:00:00 2001 From: sylvinite Date: Mon, 16 Jan 2017 09:02:15 +0100 Subject: [PATCH] Readded bashrc piper dependency, can't get rid of it yet --- roles/ngi_pipeline/templates/sourceme_common.sh.j2 | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/roles/ngi_pipeline/templates/sourceme_common.sh.j2 b/roles/ngi_pipeline/templates/sourceme_common.sh.j2 index 970b3063..187cf087 100644 --- a/roles/ngi_pipeline/templates/sourceme_common.sh.j2 +++ b/roles/ngi_pipeline/templates/sourceme_common.sh.j2 @@ -3,6 +3,10 @@ export CHARON_BASE_URL={{ charon_base_url }} +# Sadly still integral to NGI Pipeline +# Hopefully possible to remove dependency in a later version +module load bioinfo-tools piper/{{ piper_module_version }} + # Force English locale as e.g. some downstream scripts depend on the # pipeline outputing data with "." as decimal output instead of Swedish ",". export LC_ALL=en_US.UTF-8