setup.py

# @Created Date: 2019-11-24 09:07:03 pm
# @Filename: setup.py
# @Email:  1730416009@stu.suda.edu.cn
# @Author: ZeFeng Zhu
# @Last Modified: 2023-03-30 01:26:56 pm
# @Copyright (c) 2019 MinghuiGroup, Soochow University
from setuptools import setup, find_namespace_packages, Extension
from Cython.Build import cythonize
import numpy

with open("README.md", "rt") as f:
    readme = f.read()


setup(
    name="pdb_profiling",
    version='0.4.4',
    include_package_data=True,
    packages=find_namespace_packages(),
    entry_points={'console_scripts': ['pdb_profiling=pdb_profiling.commands.command:Interface']},
    install_requires=[
        'aioftp>=0.18.1',
        'aiohttp>=3.7.4',
        'aiofiles>=0.6.0',
        'unsync==1.2.1',
        'tenacity>=6.3.0',
        'orjson>=3.0.2',
        'pyexcel>=0.6.4',
        'pandas>=1.1.5',
        'numpy>=1.19.2',
        'textdistance>=4.2.0',
        'databases[sqlite]==0.4.3',
        'rich>=9.5.0',
        'orm==0.1.5',
        'typesystem==0.2.5',
        'sqlalchemy==1.3.13',
        'scikit-learn>=0.23.2',
        'python-slugify>=4.0.0',
        'cachetools>=4.1.0',
        'click>=7.1.2',
        'parasail>=1.2.4'
     ],
    ext_modules=cythonize([
        Extension("pdb_profiling.cython.cyrange", ["pdb_profiling/cython/cyrange.pyx"]),
        Extension("pdb_profiling.cython.py_qcprot", ["pdb_profiling/cython/py_qcprot.pyx", "pdb_profiling/cython/qcprot.c"]),
        ], compiler_directives={"language_level": "3"}),
    include_dirs=[numpy.get_include()],
    license="MIT",
    author_email="hydrozzf@qq.com",
    maintainer="ZeFeng Zhu",
    maintainer_email="hydrozzf@qq.com",
    description="Profiling Protein Structures from Protein Data Bank and integrate various resources.🏄‍♂️",
    long_description=readme,
    long_description_content_type="text/markdown",
    url="https://github.com/NatureGeorge/pdb-profiling",
    python_requires=">=3.7",
    classifiers=[
        "Operating System :: OS Independent",
        "Programming Language :: Python :: 3.7",
        "Programming Language :: Python :: 3.8"
    ],
    )

"""
Packaged By
python setup.py sdist bdist_wheel
twine upload --repository-url https://test.pypi.org/legacy/ dist/*
twine upload --repository-url https://upload.pypi.org/legacy/ dist/*

> https://packaging.python.org/tutorials/packaging-projects/

python setup.py build_ext --inplace
auditwheel repair pdb_profiling-0.2.7a9-cp38-cp38-linux_x86_64.whl

> https://pypi.org/project/auditwheel/
"""